Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01730

Experiment: amylopectin from maize 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01729 and BACOVA_01730 are separated by 29 nucleotidesBACOVA_01730 and BACOVA_01731 are separated by 151 nucleotidesBACOVA_01731 and BACOVA_01732 overlap by 4 nucleotidesBACOVA_01732 and BACOVA_01733 are separated by 34 nucleotides BACOVA_01729: BACOVA_01729 - hypothetical protein, at 153,519 to 155,351 _01729 BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010 _01730 BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311 _01731 BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427 _01732 BACOVA_01733: BACOVA_01733 - hypothetical protein, at 156,462 to 157,868 _01733 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2 3at 154.469 kb on + strand, within BACOVA_01729at 154.469 kb on + strand, within BACOVA_01729at 154.470 kb on - strand, within BACOVA_01729at 154.497 kb on - strand, within BACOVA_01729at 154.524 kb on - strand, within BACOVA_01729at 154.599 kb on - strand, within BACOVA_01729at 154.599 kb on - strand, within BACOVA_01729at 154.599 kb on - strand, within BACOVA_01729at 154.728 kb on + strand, within BACOVA_01729at 154.728 kb on + strand, within BACOVA_01729at 154.806 kb on + strand, within BACOVA_01729at 154.807 kb on - strand, within BACOVA_01729at 154.986 kb on - strand, within BACOVA_01729at 154.986 kb on - strand, within BACOVA_01729at 154.987 kb on + strand, within BACOVA_01729at 154.987 kb on + strand, within BACOVA_01729at 154.989 kb on + strand, within BACOVA_01729at 154.990 kb on - strand, within BACOVA_01729at 155.079 kb on + strand, within BACOVA_01729at 155.080 kb on - strand, within BACOVA_01729at 155.142 kb on - strand, within BACOVA_01729at 155.183 kb on - strandat 155.266 kb on - strandat 155.270 kb on - strandat 155.279 kb on - strandat 155.331 kb on + strandat 155.364 kb on + strandat 155.371 kb on + strandat 155.378 kb on + strandat 155.460 kb on - strand, within BACOVA_01730at 155.506 kb on - strand, within BACOVA_01730at 155.521 kb on - strand, within BACOVA_01730at 155.540 kb on - strand, within BACOVA_01730at 155.586 kb on + strand, within BACOVA_01730at 155.636 kb on + strand, within BACOVA_01730at 155.681 kb on + strand, within BACOVA_01730at 155.695 kb on - strand, within BACOVA_01730at 155.695 kb on - strand, within BACOVA_01730at 155.717 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.820 kb on - strand, within BACOVA_01730at 155.920 kb on + strand, within BACOVA_01730at 155.936 kb on - strand, within BACOVA_01730at 155.985 kb on + strandat 155.986 kb on - strandat 156.011 kb on - strandat 156.021 kb on - strandat 156.021 kb on - strandat 156.095 kb on + strandat 156.222 kb on - strand, within BACOVA_01731at 156.229 kb on + strand, within BACOVA_01731at 156.242 kb on + strand, within BACOVA_01731at 156.242 kb on + strand, within BACOVA_01731at 156.248 kb on + strand, within BACOVA_01731at 156.257 kb on - strand, within BACOVA_01731at 156.260 kb on + strand, within BACOVA_01731at 156.260 kb on + strand, within BACOVA_01731at 156.261 kb on - strand, within BACOVA_01731at 156.261 kb on - strand, within BACOVA_01731at 156.276 kb on + strand, within BACOVA_01731at 156.320 kb on - strand, within BACOVA_01732at 156.408 kb on - strand, within BACOVA_01732at 156.408 kb on - strand, within BACOVA_01732at 156.426 kb on - strandat 156.482 kb on + strandat 156.485 kb on + strandat 156.494 kb on - strandat 156.535 kb on + strandat 156.586 kb on - strandat 156.586 kb on - strandat 156.593 kb on - strandat 156.593 kb on - strandat 156.625 kb on + strand, within BACOVA_01733at 156.626 kb on - strand, within BACOVA_01733at 156.626 kb on - strand, within BACOVA_01733at 156.630 kb on + strand, within BACOVA_01733at 156.630 kb on + strand, within BACOVA_01733at 156.737 kb on - strand, within BACOVA_01733at 156.737 kb on - strand, within BACOVA_01733at 156.895 kb on + strand, within BACOVA_01733at 156.973 kb on + strand, within BACOVA_01733

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
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154,469 + BACOVA_01729 0.52 -0.4
154,469 + BACOVA_01729 0.52 -1.2
154,470 - BACOVA_01729 0.52 -0.8
154,497 - BACOVA_01729 0.53 -0.9
154,524 - BACOVA_01729 0.55 -1.4
154,599 - BACOVA_01729 0.59 -1.2
154,599 - BACOVA_01729 0.59 -1.9
154,599 - BACOVA_01729 0.59 -0.7
154,728 + BACOVA_01729 0.66 +0.1
154,728 + BACOVA_01729 0.66 +3.1
154,806 + BACOVA_01729 0.70 -0.2
154,807 - BACOVA_01729 0.70 +2.5
154,986 - BACOVA_01729 0.80 +1.2
154,986 - BACOVA_01729 0.80 +1.2
154,987 + BACOVA_01729 0.80 -1.2
154,987 + BACOVA_01729 0.80 +1.4
154,989 + BACOVA_01729 0.80 +2.0
154,990 - BACOVA_01729 0.80 +0.6
155,079 + BACOVA_01729 0.85 +2.7
155,080 - BACOVA_01729 0.85 -1.9
155,142 - BACOVA_01729 0.89 -0.5
155,183 - +0.7
155,266 - -0.5
155,270 - +0.5
155,279 - +0.4
155,331 + +0.2
155,364 + +1.3
155,371 + -0.8
155,378 + -0.5
155,460 - BACOVA_01730 0.13 -0.8
155,506 - BACOVA_01730 0.20 -0.3
155,521 - BACOVA_01730 0.22 -0.1
155,540 - BACOVA_01730 0.25 +2.8
155,586 + BACOVA_01730 0.33 +0.8
155,636 + BACOVA_01730 0.40 +0.7
155,681 + BACOVA_01730 0.48 -0.8
155,695 - BACOVA_01730 0.50 +1.5
155,695 - BACOVA_01730 0.50 +0.6
155,717 - BACOVA_01730 0.53 -0.4
155,791 - BACOVA_01730 0.65 -0.3
155,791 - BACOVA_01730 0.65 +0.2
155,791 - BACOVA_01730 0.65 -0.8
155,820 - BACOVA_01730 0.70 +0.7
155,920 + BACOVA_01730 0.86 -0.5
155,936 - BACOVA_01730 0.88 -2.1
155,985 + +0.3
155,986 - -0.4
156,011 - -0.7
156,021 - +0.8
156,021 - -0.2
156,095 + -1.5
156,222 - BACOVA_01731 0.40 +0.9
156,229 + BACOVA_01731 0.45 -0.1
156,242 + BACOVA_01731 0.53 -0.3
156,242 + BACOVA_01731 0.53 +1.4
156,248 + BACOVA_01731 0.57 +1.1
156,257 - BACOVA_01731 0.63 +0.2
156,260 + BACOVA_01731 0.65 -0.5
156,260 + BACOVA_01731 0.65 +1.0
156,261 - BACOVA_01731 0.66 -0.5
156,261 - BACOVA_01731 0.66 +0.5
156,276 + BACOVA_01731 0.76 -2.1
156,320 - BACOVA_01732 0.10 +1.3
156,408 - BACOVA_01732 0.83 +1.6
156,408 - BACOVA_01732 0.83 -1.2
156,426 - -1.1
156,482 + +0.2
156,485 + +0.5
156,494 - +0.5
156,535 + +0.7
156,586 - -0.6
156,586 - -0.1
156,593 - -0.3
156,593 - +0.2
156,625 + BACOVA_01733 0.12 +0.6
156,626 - BACOVA_01733 0.12 -0.2
156,626 - BACOVA_01733 0.12 +1.9
156,630 + BACOVA_01733 0.12 -0.9
156,630 + BACOVA_01733 0.12 -0.9
156,737 - BACOVA_01733 0.20 -0.7
156,737 - BACOVA_01733 0.20 -0.4
156,895 + BACOVA_01733 0.31 +1.6
156,973 + BACOVA_01733 0.36 -1.9

Or see this region's nucleotide sequence