Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01647 and BACOVA_01648 are separated by 207 nucleotides BACOVA_01648 and BACOVA_01649 are separated by 154 nucleotides
BACOVA_01647: BACOVA_01647 - hypothetical protein, at 54,825 to 55,370
_01647
BACOVA_01648: BACOVA_01648 - diphosphate--fructose-6-phosphate 1-phosphotransferase, at 55,578 to 57,224
_01648
BACOVA_01649: BACOVA_01649 - putative phage tail component domain protein, at 57,379 to 58,272
_01649
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 55.438 kb on + strand at 55.558 kb on + strand at 57.245 kb on + strand at 57.264 kb on + strand at 57.286 kb on + strand at 57.311 kb on + strand at 57.348 kb on + strand at 57.349 kb on - strand at 57.371 kb on + strand at 57.371 kb on + strand at 57.377 kb on - strand at 57.377 kb on - strand at 57.377 kb on - strand at 57.532 kb on - strand, within BACOVA_01649 at 57.532 kb on - strand, within BACOVA_01649 at 57.630 kb on - strand, within BACOVA_01649 at 57.666 kb on + strand, within BACOVA_01649 at 57.667 kb on - strand, within BACOVA_01649 at 57.691 kb on + strand, within BACOVA_01649 at 58.031 kb on - strand, within BACOVA_01649 at 58.044 kb on + strand, within BACOVA_01649 at 58.044 kb on + strand, within BACOVA_01649 at 58.049 kb on + strand, within BACOVA_01649 at 58.050 kb on - strand, within BACOVA_01649 at 58.105 kb on + strand, within BACOVA_01649 at 58.106 kb on - strand, within BACOVA_01649 at 58.126 kb on + strand, within BACOVA_01649 at 58.126 kb on + strand, within BACOVA_01649 at 58.127 kb on - strand, within BACOVA_01649 at 58.127 kb on - strand, within BACOVA_01649 at 58.129 kb on + strand, within BACOVA_01649 at 58.130 kb on - strand, within BACOVA_01649 at 58.177 kb on - strand, within BACOVA_01649 at 58.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 55,438 + +0.4 55,558 + -0.4 57,245 + +1.7 57,264 + +1.0 57,286 + +0.2 57,311 + -0.3 57,348 + +0.3 57,349 - -3.2 57,371 + -1.5 57,371 + +0.4 57,377 - -0.5 57,377 - -0.7 57,377 - -2.3 57,532 - BACOVA_01649 0.17 -0.8 57,532 - BACOVA_01649 0.17 -1.7 57,630 - BACOVA_01649 0.28 -0.7 57,666 + BACOVA_01649 0.32 +2.2 57,667 - BACOVA_01649 0.32 -1.7 57,691 + BACOVA_01649 0.35 -2.9 58,031 - BACOVA_01649 0.73 -1.1 58,044 + BACOVA_01649 0.74 +0.4 58,044 + BACOVA_01649 0.74 +0.5 58,049 + BACOVA_01649 0.75 -0.7 58,050 - BACOVA_01649 0.75 -1.2 58,105 + BACOVA_01649 0.81 +1.5 58,106 - BACOVA_01649 0.81 -1.2 58,126 + BACOVA_01649 0.84 +3.5 58,126 + BACOVA_01649 0.84 +2.2 58,127 - BACOVA_01649 0.84 +0.4 58,127 - BACOVA_01649 0.84 +0.9 58,129 + BACOVA_01649 0.84 +0.3 58,130 - BACOVA_01649 0.84 -0.9 58,177 - BACOVA_01649 0.89 -0.8 58,185 - +1.7
Or see this region's nucleotide sequence