Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01643 and BACOVA_01644 are separated by 51 nucleotides BACOVA_01644 and BACOVA_01645 are separated by 139 nucleotides BACOVA_01645 and BACOVA_01646 are separated by 165 nucleotides BACOVA_01646 and BACOVA_00107 are separated by 283 nucleotides
BACOVA_01643: BACOVA_01643 - prokaryotic transcription elongation factor, GreA/GreB domain protein, at 154,110 to 154,640
_01643
BACOVA_01644: BACOVA_01644 - histidine triad domain protein, at 154,692 to 155,084
_01644
BACOVA_01645: BACOVA_01645 - hypothetical protein, at 155,224 to 155,430
_01645
BACOVA_01646: BACOVA_01646 - hypothetical protein, at 155,596 to 155,727
_01646
BACOVA_00107: BACOVA_00107 - hypothetical protein, at 156,011 to 157,042
_00107
Position (kb) 155
156 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 154.284 kb on - strand, within BACOVA_01643 at 154.311 kb on + strand, within BACOVA_01643 at 154.311 kb on + strand, within BACOVA_01643 at 154.337 kb on + strand, within BACOVA_01643 at 154.337 kb on + strand, within BACOVA_01643 at 154.352 kb on + strand, within BACOVA_01643 at 154.403 kb on + strand, within BACOVA_01643 at 154.433 kb on - strand, within BACOVA_01643 at 154.433 kb on - strand, within BACOVA_01643 at 154.437 kb on - strand, within BACOVA_01643 at 154.480 kb on - strand, within BACOVA_01643 at 154.480 kb on - strand, within BACOVA_01643 at 154.481 kb on + strand, within BACOVA_01643 at 154.482 kb on - strand, within BACOVA_01643 at 154.579 kb on + strand, within BACOVA_01643 at 154.580 kb on - strand, within BACOVA_01643 at 154.589 kb on + strand at 154.604 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.643 kb on + strand at 154.644 kb on - strand at 154.674 kb on - strand at 154.702 kb on + strand at 154.702 kb on + strand at 154.802 kb on + strand, within BACOVA_01644 at 154.802 kb on + strand, within BACOVA_01644 at 154.802 kb on + strand, within BACOVA_01644 at 154.802 kb on + strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.828 kb on + strand, within BACOVA_01644 at 154.829 kb on - strand, within BACOVA_01644 at 154.833 kb on + strand, within BACOVA_01644 at 154.834 kb on - strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.957 kb on + strand, within BACOVA_01644 at 154.957 kb on + strand, within BACOVA_01644 at 154.970 kb on + strand, within BACOVA_01644 at 155.081 kb on - strand at 155.082 kb on + strand at 155.082 kb on + strand at 155.083 kb on - strand at 155.100 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 154,284 - BACOVA_01643 0.33 -1.3 154,311 + BACOVA_01643 0.38 +6.7 154,311 + BACOVA_01643 0.38 +7.2 154,337 + BACOVA_01643 0.43 +6.9 154,337 + BACOVA_01643 0.43 +6.2 154,352 + BACOVA_01643 0.46 +6.3 154,403 + BACOVA_01643 0.55 +2.5 154,433 - BACOVA_01643 0.61 +0.4 154,433 - BACOVA_01643 0.61 +6.0 154,437 - BACOVA_01643 0.62 +5.7 154,480 - BACOVA_01643 0.70 +6.8 154,480 - BACOVA_01643 0.70 +5.8 154,481 + BACOVA_01643 0.70 +6.4 154,482 - BACOVA_01643 0.70 +6.0 154,579 + BACOVA_01643 0.88 +0.4 154,580 - BACOVA_01643 0.89 +4.4 154,589 + +3.4 154,604 + +7.1 154,624 + +4.8 154,624 + +2.2 154,643 + +0.4 154,644 - +1.9 154,674 - -0.3 154,702 + -1.6 154,702 + +4.1 154,802 + BACOVA_01644 0.28 -0.1 154,802 + BACOVA_01644 0.28 -0.0 154,802 + BACOVA_01644 0.28 +1.0 154,802 + BACOVA_01644 0.28 +1.1 154,803 - BACOVA_01644 0.28 +2.1 154,803 - BACOVA_01644 0.28 +0.6 154,803 - BACOVA_01644 0.28 +0.2 154,803 - BACOVA_01644 0.28 +3.0 154,828 + BACOVA_01644 0.35 +1.6 154,829 - BACOVA_01644 0.35 -0.7 154,833 + BACOVA_01644 0.36 +0.6 154,834 - BACOVA_01644 0.36 -0.2 154,868 + BACOVA_01644 0.45 -0.8 154,868 + BACOVA_01644 0.45 +0.9 154,868 + BACOVA_01644 0.45 -2.1 154,868 + BACOVA_01644 0.45 -0.0 154,957 + BACOVA_01644 0.67 +0.1 154,957 + BACOVA_01644 0.67 +1.1 154,970 + BACOVA_01644 0.71 +0.2 155,081 - +0.6 155,082 + +2.4 155,082 + +0.4 155,083 - +0.9 155,100 + -1.6
Or see this region's nucleotide sequence