Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01491 and BACOVA_01492 are separated by 66 nucleotides BACOVA_01492 and BACOVA_01493 are separated by 19 nucleotides BACOVA_01493 and BACOVA_01494 are separated by 93 nucleotides
BACOVA_01491: BACOVA_01491 - hypothetical protein, at 2,371 to 4,752
_01491
BACOVA_01492: BACOVA_01492 - hypothetical protein, at 4,819 to 5,232
_01492
BACOVA_01493: BACOVA_01493 - glycosyl hydrolase family 2, sugar binding domain protein, at 5,252 to 5,956
_01493
BACOVA_01494: BACOVA_01494 - F5/8 type C domain protein, at 6,050 to 8,155
_01494
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3.838 kb on + strand, within BACOVA_01491 at 3.879 kb on + strand, within BACOVA_01491 at 3.918 kb on + strand, within BACOVA_01491 at 3.989 kb on + strand, within BACOVA_01491 at 3.990 kb on - strand, within BACOVA_01491 at 4.012 kb on - strand, within BACOVA_01491 at 4.042 kb on - strand, within BACOVA_01491 at 4.043 kb on + strand, within BACOVA_01491 at 4.043 kb on + strand, within BACOVA_01491 at 4.080 kb on + strand, within BACOVA_01491 at 4.081 kb on - strand, within BACOVA_01491 at 4.084 kb on - strand, within BACOVA_01491 at 4.125 kb on - strand, within BACOVA_01491 at 4.130 kb on - strand, within BACOVA_01491 at 4.136 kb on + strand, within BACOVA_01491 at 4.137 kb on - strand, within BACOVA_01491 at 4.153 kb on + strand, within BACOVA_01491 at 4.155 kb on + strand, within BACOVA_01491 at 4.233 kb on + strand, within BACOVA_01491 at 4.234 kb on - strand, within BACOVA_01491 at 4.234 kb on - strand, within BACOVA_01491 at 4.235 kb on + strand, within BACOVA_01491 at 4.279 kb on - strand, within BACOVA_01491 at 4.284 kb on + strand, within BACOVA_01491 at 4.284 kb on + strand, within BACOVA_01491 at 4.284 kb on + strand, within BACOVA_01491 at 4.328 kb on + strand, within BACOVA_01491 at 4.328 kb on + strand, within BACOVA_01491 at 4.329 kb on - strand, within BACOVA_01491 at 4.329 kb on - strand, within BACOVA_01491 at 4.329 kb on - strand, within BACOVA_01491 at 4.348 kb on - strand, within BACOVA_01491 at 4.348 kb on - strand, within BACOVA_01491 at 4.349 kb on + strand, within BACOVA_01491 at 4.349 kb on + strand, within BACOVA_01491 at 4.349 kb on + strand, within BACOVA_01491 at 4.434 kb on + strand, within BACOVA_01491 at 4.474 kb on - strand, within BACOVA_01491 at 4.570 kb on - strand at 4.570 kb on - strand at 4.644 kb on - strand at 4.650 kb on + strand at 4.699 kb on - strand at 4.723 kb on - strand at 4.739 kb on - strand at 4.739 kb on - strand at 4.740 kb on + strand at 4.741 kb on - strand at 4.763 kb on - strand at 4.774 kb on + strand at 4.778 kb on + strand at 4.820 kb on + strand at 4.831 kb on + strand at 4.831 kb on + strand at 4.834 kb on + strand at 4.927 kb on + strand, within BACOVA_01492 at 4.933 kb on - strand, within BACOVA_01492 at 4.956 kb on + strand, within BACOVA_01492 at 4.956 kb on + strand, within BACOVA_01492 at 4.957 kb on - strand, within BACOVA_01492 at 5.020 kb on + strand, within BACOVA_01492 at 5.020 kb on + strand, within BACOVA_01492 at 5.020 kb on + strand, within BACOVA_01492 at 5.024 kb on + strand, within BACOVA_01492 at 5.024 kb on + strand, within BACOVA_01492 at 5.024 kb on + strand, within BACOVA_01492 at 5.025 kb on - strand, within BACOVA_01492 at 5.025 kb on - strand, within BACOVA_01492 at 5.025 kb on - strand, within BACOVA_01492 at 5.026 kb on + strand, within BACOVA_01492 at 5.110 kb on + strand, within BACOVA_01492 at 5.116 kb on - strand, within BACOVA_01492 at 5.124 kb on + strand, within BACOVA_01492 at 5.166 kb on + strand, within BACOVA_01492 at 5.180 kb on - strand, within BACOVA_01492 at 5.200 kb on + strand at 5.200 kb on + strand at 5.260 kb on + strand at 5.261 kb on - strand at 5.261 kb on - strand at 5.262 kb on + strand at 5.297 kb on + strand at 5.297 kb on + strand at 5.298 kb on - strand at 5.301 kb on + strand at 5.301 kb on + strand at 5.359 kb on + strand, within BACOVA_01493 at 5.364 kb on - strand, within BACOVA_01493 at 5.368 kb on + strand, within BACOVA_01493 at 5.369 kb on - strand, within BACOVA_01493 at 5.370 kb on + strand, within BACOVA_01493 at 5.370 kb on + strand, within BACOVA_01493 at 5.370 kb on + strand, within BACOVA_01493 at 5.371 kb on - strand, within BACOVA_01493 at 5.428 kb on + strand, within BACOVA_01493 at 5.441 kb on + strand, within BACOVA_01493 at 5.441 kb on + strand, within BACOVA_01493 at 5.470 kb on + strand, within BACOVA_01493 at 5.470 kb on + strand, within BACOVA_01493 at 5.471 kb on - strand, within BACOVA_01493 at 5.495 kb on - strand, within BACOVA_01493 at 5.495 kb on - strand, within BACOVA_01493 at 5.525 kb on - strand, within BACOVA_01493 at 5.549 kb on - strand, within BACOVA_01493 at 5.552 kb on + strand, within BACOVA_01493 at 5.553 kb on - strand, within BACOVA_01493 at 5.554 kb on + strand, within BACOVA_01493 at 5.572 kb on - strand, within BACOVA_01493 at 5.581 kb on + strand, within BACOVA_01493 at 5.586 kb on - strand, within BACOVA_01493 at 5.586 kb on - strand, within BACOVA_01493 at 5.651 kb on + strand, within BACOVA_01493 at 5.651 kb on + strand, within BACOVA_01493 at 5.675 kb on - strand, within BACOVA_01493 at 5.675 kb on - strand, within BACOVA_01493 at 5.734 kb on + strand, within BACOVA_01493 at 5.734 kb on + strand, within BACOVA_01493 at 5.792 kb on - strand, within BACOVA_01493 at 5.802 kb on - strand, within BACOVA_01493 at 5.802 kb on - strand, within BACOVA_01493 at 5.885 kb on + strand, within BACOVA_01493 at 5.902 kb on - strand at 5.905 kb on + strand at 5.905 kb on + strand at 5.906 kb on - strand at 5.926 kb on + strand at 5.927 kb on - strand at 5.927 kb on - strand at 5.930 kb on + strand at 5.939 kb on + strand at 5.942 kb on + strand at 5.997 kb on + strand at 6.004 kb on + strand at 6.005 kb on - strand at 6.019 kb on - strand at 6.022 kb on - strand at 6.024 kb on + strand at 6.024 kb on + strand at 6.038 kb on + strand at 6.039 kb on - strand at 6.042 kb on + strand at 6.042 kb on + strand at 6.042 kb on + strand at 6.053 kb on + strand at 6.054 kb on - strand at 6.065 kb on - strand at 6.089 kb on - strand at 6.089 kb on - strand at 6.124 kb on + strand at 6.128 kb on - strand at 6.129 kb on + strand at 6.130 kb on - strand at 6.148 kb on + strand at 6.149 kb on - strand at 6.149 kb on - strand at 6.188 kb on - strand at 6.203 kb on - strand at 6.224 kb on - strand at 6.226 kb on + strand at 6.226 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 3,838 + BACOVA_01491 0.62 +1.4 3,879 + BACOVA_01491 0.63 -0.5 3,918 + BACOVA_01491 0.65 -0.0 3,989 + BACOVA_01491 0.68 -0.0 3,990 - BACOVA_01491 0.68 -0.1 4,012 - BACOVA_01491 0.69 +0.7 4,042 - BACOVA_01491 0.70 +0.2 4,043 + BACOVA_01491 0.70 -1.6 4,043 + BACOVA_01491 0.70 +3.4 4,080 + BACOVA_01491 0.72 +1.8 4,081 - BACOVA_01491 0.72 +0.3 4,084 - BACOVA_01491 0.72 +4.4 4,125 - BACOVA_01491 0.74 -0.2 4,130 - BACOVA_01491 0.74 +0.8 4,136 + BACOVA_01491 0.74 +0.6 4,137 - BACOVA_01491 0.74 +0.6 4,153 + BACOVA_01491 0.75 -2.5 4,155 + BACOVA_01491 0.75 +1.6 4,233 + BACOVA_01491 0.78 -1.3 4,234 - BACOVA_01491 0.78 -0.8 4,234 - BACOVA_01491 0.78 +0.3 4,235 + BACOVA_01491 0.78 -0.4 4,279 - BACOVA_01491 0.80 -0.3 4,284 + BACOVA_01491 0.80 +2.2 4,284 + BACOVA_01491 0.80 +1.0 4,284 + BACOVA_01491 0.80 -0.0 4,328 + BACOVA_01491 0.82 +1.0 4,328 + BACOVA_01491 0.82 +0.1 4,329 - BACOVA_01491 0.82 -0.2 4,329 - BACOVA_01491 0.82 +0.4 4,329 - BACOVA_01491 0.82 -0.9 4,348 - BACOVA_01491 0.83 -1.8 4,348 - BACOVA_01491 0.83 +0.8 4,349 + BACOVA_01491 0.83 -0.7 4,349 + BACOVA_01491 0.83 -2.6 4,349 + BACOVA_01491 0.83 -0.4 4,434 + BACOVA_01491 0.87 +0.4 4,474 - BACOVA_01491 0.88 -0.4 4,570 - -1.4 4,570 - -0.3 4,644 - -2.9 4,650 + -1.6 4,699 - -2.1 4,723 - +1.0 4,739 - -0.9 4,739 - -2.3 4,740 + -2.7 4,741 - +0.2 4,763 - +0.4 4,774 + -2.1 4,778 + -1.1 4,820 + +1.0 4,831 + +0.4 4,831 + -0.1 4,834 + -1.3 4,927 + BACOVA_01492 0.26 -3.3 4,933 - BACOVA_01492 0.28 -0.4 4,956 + BACOVA_01492 0.33 +2.3 4,956 + BACOVA_01492 0.33 -0.0 4,957 - BACOVA_01492 0.33 -1.1 5,020 + BACOVA_01492 0.49 +1.6 5,020 + BACOVA_01492 0.49 -0.4 5,020 + BACOVA_01492 0.49 +1.4 5,024 + BACOVA_01492 0.50 -1.1 5,024 + BACOVA_01492 0.50 -0.1 5,024 + BACOVA_01492 0.50 -0.8 5,025 - BACOVA_01492 0.50 -0.4 5,025 - BACOVA_01492 0.50 -0.5 5,025 - BACOVA_01492 0.50 -0.7 5,026 + BACOVA_01492 0.50 +0.4 5,110 + BACOVA_01492 0.70 +0.0 5,116 - BACOVA_01492 0.72 +3.4 5,124 + BACOVA_01492 0.74 +3.8 5,166 + BACOVA_01492 0.84 -1.6 5,180 - BACOVA_01492 0.87 -0.9 5,200 + -2.1 5,200 + -0.6 5,260 + -0.8 5,261 - -0.1 5,261 - -0.2 5,262 + +0.8 5,297 + -0.4 5,297 + +0.7 5,298 - -0.5 5,301 + -0.3 5,301 + +0.2 5,359 + BACOVA_01493 0.15 -0.3 5,364 - BACOVA_01493 0.16 +0.2 5,368 + BACOVA_01493 0.16 -0.6 5,369 - BACOVA_01493 0.17 -1.8 5,370 + BACOVA_01493 0.17 -2.3 5,370 + BACOVA_01493 0.17 -0.0 5,370 + BACOVA_01493 0.17 -1.7 5,371 - BACOVA_01493 0.17 +0.1 5,428 + BACOVA_01493 0.25 -0.2 5,441 + BACOVA_01493 0.27 +3.6 5,441 + BACOVA_01493 0.27 -0.4 5,470 + BACOVA_01493 0.31 -1.4 5,470 + BACOVA_01493 0.31 +0.5 5,471 - BACOVA_01493 0.31 -0.4 5,495 - BACOVA_01493 0.34 +0.6 5,495 - BACOVA_01493 0.34 -1.4 5,525 - BACOVA_01493 0.39 -1.0 5,549 - BACOVA_01493 0.42 -1.4 5,552 + BACOVA_01493 0.43 -2.0 5,553 - BACOVA_01493 0.43 -1.2 5,554 + BACOVA_01493 0.43 +0.9 5,572 - BACOVA_01493 0.45 -2.2 5,581 + BACOVA_01493 0.47 -1.2 5,586 - BACOVA_01493 0.47 +0.1 5,586 - BACOVA_01493 0.47 -2.0 5,651 + BACOVA_01493 0.57 -0.2 5,651 + BACOVA_01493 0.57 -2.1 5,675 - BACOVA_01493 0.60 -0.2 5,675 - BACOVA_01493 0.60 -0.1 5,734 + BACOVA_01493 0.68 -0.9 5,734 + BACOVA_01493 0.68 -0.0 5,792 - BACOVA_01493 0.77 -1.0 5,802 - BACOVA_01493 0.78 +1.2 5,802 - BACOVA_01493 0.78 -1.8 5,885 + BACOVA_01493 0.90 +0.0 5,902 - +0.5 5,905 + +0.9 5,905 + +1.9 5,906 - -0.3 5,926 + -2.7 5,927 - -0.7 5,927 - -1.3 5,930 + -1.3 5,939 + -1.8 5,942 + +0.5 5,997 + -1.2 6,004 + +1.5 6,005 - -1.9 6,019 - -0.8 6,022 - -1.1 6,024 + -0.6 6,024 + +1.3 6,038 + -0.5 6,039 - +0.6 6,042 + -0.7 6,042 + -0.6 6,042 + +0.5 6,053 + -0.6 6,054 - -1.4 6,065 - -0.9 6,089 - -0.5 6,089 - +0.1 6,124 + -0.8 6,128 - -0.8 6,129 + +0.1 6,130 - -2.7 6,148 + +3.3 6,149 - -0.2 6,149 - -2.3 6,188 - -0.0 6,203 - -1.8 6,224 - -2.1 6,226 + -0.2 6,226 + +0.2
Or see this region's nucleotide sequence