Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01465 and BACOVA_01466 are separated by 263 nucleotides BACOVA_01466 and BACOVA_01467 are separated by 114 nucleotides BACOVA_01467 and BACOVA_01468 are separated by 137 nucleotides BACOVA_01468 and BACOVA_01469 are separated by 169 nucleotides BACOVA_01469 and BACOVA_01470 are separated by 44 nucleotides
BACOVA_01465: BACOVA_01465 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 123,248 to 124,783
_01465
BACOVA_01466: BACOVA_01466 - hypothetical protein, at 125,047 to 125,154
_01466
BACOVA_01467: BACOVA_01467 - thioredoxin, at 125,269 to 125,592
_01467
BACOVA_01468: BACOVA_01468 - nicotinate phosphoribosyltransferase, at 125,730 to 126,905
_01468
BACOVA_01469: BACOVA_01469 - hypothetical protein, at 127,075 to 127,605
_01469
BACOVA_01470: BACOVA_01470 - hypothetical protein, at 127,650 to 128,375
_01470
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 124.743 kb on - strand at 124.762 kb on + strand at 124.775 kb on + strand at 124.775 kb on + strand at 124.783 kb on + strand at 124.784 kb on - strand at 124.787 kb on + strand at 124.787 kb on + strand at 124.788 kb on - strand at 124.790 kb on + strand at 124.790 kb on + strand at 124.814 kb on + strand at 124.815 kb on - strand at 124.856 kb on + strand at 124.939 kb on + strand at 124.955 kb on + strand at 124.975 kb on + strand at 125.049 kb on - strand at 125.102 kb on + strand, within BACOVA_01466 at 125.102 kb on + strand, within BACOVA_01466 at 125.103 kb on - strand, within BACOVA_01466 at 125.184 kb on + strand at 125.184 kb on + strand at 125.185 kb on - strand at 125.185 kb on - strand at 125.190 kb on - strand at 125.190 kb on - strand at 125.191 kb on + strand at 125.191 kb on + strand at 125.213 kb on + strand at 125.228 kb on - strand at 125.233 kb on + strand at 125.234 kb on - strand at 125.234 kb on - strand at 125.242 kb on - strand at 125.244 kb on + strand at 125.248 kb on + strand at 125.376 kb on + strand, within BACOVA_01467 at 125.376 kb on + strand, within BACOVA_01467 at 125.432 kb on + strand, within BACOVA_01467 at 125.473 kb on + strand, within BACOVA_01467 at 125.474 kb on - strand, within BACOVA_01467 at 125.474 kb on - strand, within BACOVA_01467 at 125.476 kb on - strand, within BACOVA_01467 at 125.493 kb on + strand, within BACOVA_01467 at 125.499 kb on + strand, within BACOVA_01467 at 125.597 kb on + strand at 125.604 kb on + strand at 125.605 kb on - strand at 125.605 kb on - strand at 125.620 kb on + strand at 125.626 kb on + strand at 125.627 kb on - strand at 125.644 kb on + strand at 125.645 kb on - strand at 125.645 kb on - strand at 125.662 kb on - strand at 125.676 kb on + strand at 125.708 kb on + strand at 125.708 kb on + strand at 125.709 kb on - strand at 125.709 kb on - strand at 125.772 kb on + strand at 125.792 kb on + strand at 125.855 kb on + strand, within BACOVA_01468 at 125.982 kb on - strand, within BACOVA_01468 at 126.043 kb on + strand, within BACOVA_01468 at 126.066 kb on - strand, within BACOVA_01468 at 126.137 kb on + strand, within BACOVA_01468 at 126.155 kb on + strand, within BACOVA_01468 at 126.155 kb on + strand, within BACOVA_01468 at 126.155 kb on + strand, within BACOVA_01468 at 126.156 kb on - strand, within BACOVA_01468 at 126.161 kb on + strand, within BACOVA_01468 at 126.176 kb on + strand, within BACOVA_01468 at 126.176 kb on + strand, within BACOVA_01468 at 126.193 kb on + strand, within BACOVA_01468 at 126.221 kb on + strand, within BACOVA_01468 at 126.222 kb on - strand, within BACOVA_01468 at 126.223 kb on + strand, within BACOVA_01468 at 126.223 kb on + strand, within BACOVA_01468 at 126.223 kb on + strand, within BACOVA_01468 at 126.224 kb on - strand, within BACOVA_01468 at 126.224 kb on - strand, within BACOVA_01468 at 126.236 kb on + strand, within BACOVA_01468 at 126.263 kb on + strand, within BACOVA_01468 at 126.263 kb on + strand, within BACOVA_01468 at 126.263 kb on + strand, within BACOVA_01468 at 126.320 kb on + strand, within BACOVA_01468 at 126.343 kb on + strand, within BACOVA_01468 at 126.344 kb on - strand, within BACOVA_01468 at 126.454 kb on - strand, within BACOVA_01468 at 126.495 kb on + strand, within BACOVA_01468 at 126.495 kb on + strand, within BACOVA_01468 at 126.495 kb on + strand, within BACOVA_01468 at 126.496 kb on - strand, within BACOVA_01468 at 126.533 kb on + strand, within BACOVA_01468 at 126.566 kb on + strand, within BACOVA_01468 at 126.567 kb on - strand, within BACOVA_01468 at 126.630 kb on - strand, within BACOVA_01468 at 126.783 kb on - strand, within BACOVA_01468 at 126.785 kb on - strand, within BACOVA_01468 at 126.830 kb on - strand at 126.848 kb on - strand at 126.853 kb on + strand at 126.863 kb on + strand at 126.869 kb on + strand at 126.870 kb on - strand at 126.886 kb on - strand at 126.888 kb on + strand at 126.897 kb on - strand at 126.922 kb on - strand at 126.927 kb on - strand at 126.928 kb on + strand at 126.960 kb on - strand at 126.960 kb on - strand at 126.969 kb on + strand at 126.969 kb on + strand at 126.969 kb on + strand at 126.970 kb on - strand at 126.970 kb on - strand at 126.976 kb on + strand at 126.983 kb on + strand at 127.025 kb on + strand at 127.026 kb on - strand at 127.027 kb on + strand at 127.027 kb on + strand at 127.027 kb on + strand at 127.028 kb on - strand at 127.028 kb on - strand at 127.028 kb on - strand at 127.029 kb on + strand at 127.030 kb on - strand at 127.056 kb on - strand at 127.062 kb on + strand at 127.066 kb on - strand at 127.068 kb on - strand at 127.071 kb on + strand at 127.071 kb on + strand at 127.072 kb on - strand at 127.072 kb on - strand at 127.072 kb on - strand at 127.072 kb on - strand at 127.080 kb on - strand at 127.102 kb on - strand at 127.129 kb on - strand, within BACOVA_01469 at 127.230 kb on + strand, within BACOVA_01469 at 127.259 kb on + strand, within BACOVA_01469 at 127.345 kb on + strand, within BACOVA_01469 at 127.345 kb on + strand, within BACOVA_01469 at 127.345 kb on + strand, within BACOVA_01469 at 127.346 kb on - strand, within BACOVA_01469 at 127.349 kb on + strand, within BACOVA_01469 at 127.350 kb on - strand, within BACOVA_01469 at 127.367 kb on + strand, within BACOVA_01469 at 127.475 kb on + strand, within BACOVA_01469 at 127.476 kb on - strand, within BACOVA_01469 at 127.476 kb on - strand, within BACOVA_01469 at 127.510 kb on - strand, within BACOVA_01469 at 127.511 kb on + strand, within BACOVA_01469 at 127.511 kb on + strand, within BACOVA_01469 at 127.511 kb on + strand, within BACOVA_01469 at 127.511 kb on + strand, within BACOVA_01469 at 127.511 kb on + strand, within BACOVA_01469 at 127.511 kb on + strand, within BACOVA_01469 at 127.512 kb on - strand, within BACOVA_01469 at 127.512 kb on - strand, within BACOVA_01469 at 127.512 kb on - strand, within BACOVA_01469 at 127.512 kb on - strand, within BACOVA_01469 at 127.515 kb on + strand, within BACOVA_01469 at 127.515 kb on + strand, within BACOVA_01469 at 127.515 kb on + strand, within BACOVA_01469 at 127.516 kb on - strand, within BACOVA_01469 at 127.593 kb on + strand at 127.605 kb on + strand at 127.605 kb on + strand at 127.632 kb on + strand at 127.645 kb on + strand at 127.651 kb on + strand at 127.652 kb on - strand at 127.652 kb on - strand at 127.660 kb on + strand at 127.671 kb on - strand at 127.676 kb on + strand at 127.719 kb on - strand at 127.730 kb on + strand, within BACOVA_01470 at 127.730 kb on + strand, within BACOVA_01470 at 127.730 kb on + strand, within BACOVA_01470 at 127.770 kb on - strand, within BACOVA_01470 at 127.852 kb on + strand, within BACOVA_01470 at 127.853 kb on - strand, within BACOVA_01470
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 124,743 - -0.4 124,762 + -2.4 124,775 + +0.9 124,775 + -1.2 124,783 + -1.0 124,784 - +1.1 124,787 + +3.6 124,787 + -1.7 124,788 - -1.7 124,790 + +0.8 124,790 + +1.0 124,814 + +0.5 124,815 - -2.3 124,856 + +0.1 124,939 + -0.8 124,955 + -0.6 124,975 + +0.4 125,049 - +0.8 125,102 + BACOVA_01466 0.51 +0.1 125,102 + BACOVA_01466 0.51 -1.3 125,103 - BACOVA_01466 0.52 -1.1 125,184 + -0.5 125,184 + +2.3 125,185 - +0.5 125,185 - +0.4 125,190 - +0.2 125,190 - +0.2 125,191 + -2.0 125,191 + +1.1 125,213 + -1.0 125,228 - +1.4 125,233 + +0.0 125,234 - -1.6 125,234 - -1.6 125,242 - -0.5 125,244 + -0.5 125,248 + -0.0 125,376 + BACOVA_01467 0.33 -0.9 125,376 + BACOVA_01467 0.33 -0.8 125,432 + BACOVA_01467 0.50 -2.5 125,473 + BACOVA_01467 0.63 +0.3 125,474 - BACOVA_01467 0.63 +1.8 125,474 - BACOVA_01467 0.63 +0.3 125,476 - BACOVA_01467 0.64 +1.1 125,493 + BACOVA_01467 0.69 -1.3 125,499 + BACOVA_01467 0.71 +0.1 125,597 + -0.6 125,604 + +2.4 125,605 - -1.4 125,605 - -0.3 125,620 + -3.2 125,626 + -0.5 125,627 - +0.3 125,644 + -1.6 125,645 - +0.5 125,645 - -0.8 125,662 - -0.1 125,676 + -1.1 125,708 + +1.2 125,708 + -0.3 125,709 - -0.9 125,709 - +0.5 125,772 + -2.5 125,792 + -0.4 125,855 + BACOVA_01468 0.11 +1.5 125,982 - BACOVA_01468 0.21 -0.9 126,043 + BACOVA_01468 0.27 -0.5 126,066 - BACOVA_01468 0.29 +2.1 126,137 + BACOVA_01468 0.35 -1.2 126,155 + BACOVA_01468 0.36 +1.4 126,155 + BACOVA_01468 0.36 -1.3 126,155 + BACOVA_01468 0.36 +0.4 126,156 - BACOVA_01468 0.36 -0.4 126,161 + BACOVA_01468 0.37 -0.5 126,176 + BACOVA_01468 0.38 -2.1 126,176 + BACOVA_01468 0.38 -0.3 126,193 + BACOVA_01468 0.39 -1.6 126,221 + BACOVA_01468 0.42 -1.8 126,222 - BACOVA_01468 0.42 -0.4 126,223 + BACOVA_01468 0.42 +1.2 126,223 + BACOVA_01468 0.42 -0.8 126,223 + BACOVA_01468 0.42 -3.1 126,224 - BACOVA_01468 0.42 +0.9 126,224 - BACOVA_01468 0.42 +2.7 126,236 + BACOVA_01468 0.43 +1.5 126,263 + BACOVA_01468 0.45 +0.3 126,263 + BACOVA_01468 0.45 +0.6 126,263 + BACOVA_01468 0.45 +0.2 126,320 + BACOVA_01468 0.50 -0.0 126,343 + BACOVA_01468 0.52 +1.6 126,344 - BACOVA_01468 0.52 -1.7 126,454 - BACOVA_01468 0.62 -1.0 126,495 + BACOVA_01468 0.65 +1.1 126,495 + BACOVA_01468 0.65 -1.1 126,495 + BACOVA_01468 0.65 -1.3 126,496 - BACOVA_01468 0.65 +2.2 126,533 + BACOVA_01468 0.68 -1.1 126,566 + BACOVA_01468 0.71 -0.0 126,567 - BACOVA_01468 0.71 -0.3 126,630 - BACOVA_01468 0.77 -1.4 126,783 - BACOVA_01468 0.90 +0.6 126,785 - BACOVA_01468 0.90 -2.2 126,830 - -1.8 126,848 - +2.1 126,853 + -0.6 126,863 + -0.9 126,869 + +0.5 126,870 - +0.4 126,886 - +1.1 126,888 + -0.1 126,897 - -0.5 126,922 - -1.9 126,927 - -0.4 126,928 + +1.3 126,960 - -1.3 126,960 - +0.3 126,969 + +0.5 126,969 + -1.4 126,969 + +1.6 126,970 - +1.7 126,970 - -1.9 126,976 + -0.1 126,983 + +1.0 127,025 + +3.4 127,026 - +1.5 127,027 + +0.1 127,027 + -0.6 127,027 + +0.1 127,028 - +2.9 127,028 - +1.0 127,028 - -0.7 127,029 + -0.4 127,030 - -1.5 127,056 - -0.5 127,062 + +0.5 127,066 - -1.6 127,068 - -1.3 127,071 + +0.5 127,071 + +0.2 127,072 - +1.9 127,072 - -1.3 127,072 - +0.4 127,072 - +0.9 127,080 - +0.9 127,102 - -0.1 127,129 - BACOVA_01469 0.10 +0.1 127,230 + BACOVA_01469 0.29 +0.7 127,259 + BACOVA_01469 0.35 +0.2 127,345 + BACOVA_01469 0.51 +2.5 127,345 + BACOVA_01469 0.51 -1.0 127,345 + BACOVA_01469 0.51 -0.6 127,346 - BACOVA_01469 0.51 +2.6 127,349 + BACOVA_01469 0.52 +3.7 127,350 - BACOVA_01469 0.52 +3.2 127,367 + BACOVA_01469 0.55 +1.5 127,475 + BACOVA_01469 0.75 -1.1 127,476 - BACOVA_01469 0.76 +4.1 127,476 - BACOVA_01469 0.76 -1.0 127,510 - BACOVA_01469 0.82 +0.3 127,511 + BACOVA_01469 0.82 -0.9 127,511 + BACOVA_01469 0.82 +0.1 127,511 + BACOVA_01469 0.82 +0.7 127,511 + BACOVA_01469 0.82 +0.5 127,511 + BACOVA_01469 0.82 -0.4 127,511 + BACOVA_01469 0.82 +1.5 127,512 - BACOVA_01469 0.82 -1.8 127,512 - BACOVA_01469 0.82 +0.8 127,512 - BACOVA_01469 0.82 +1.2 127,512 - BACOVA_01469 0.82 -2.0 127,515 + BACOVA_01469 0.83 -2.7 127,515 + BACOVA_01469 0.83 +2.1 127,515 + BACOVA_01469 0.83 -1.3 127,516 - BACOVA_01469 0.83 +0.9 127,593 + +1.8 127,605 + +0.0 127,605 + -0.1 127,632 + +0.8 127,645 + +0.3 127,651 + +0.6 127,652 - -1.5 127,652 - -0.3 127,660 + -2.5 127,671 - -0.4 127,676 + +2.4 127,719 - +1.7 127,730 + BACOVA_01470 0.11 +1.5 127,730 + BACOVA_01470 0.11 +0.1 127,730 + BACOVA_01470 0.11 +2.0 127,770 - BACOVA_01470 0.17 -2.1 127,852 + BACOVA_01470 0.28 -0.3 127,853 - BACOVA_01470 0.28 +0.2
Or see this region's nucleotide sequence