Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01462

Experiment: amylopectin from maize 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01461 and BACOVA_01462 are separated by 129 nucleotidesBACOVA_01462 and BACOVA_01463 are separated by 609 nucleotides BACOVA_01461: BACOVA_01461 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 118,100 to 119,380 _01461 BACOVA_01462: BACOVA_01462 - N-acetylmuramoyl-L-alanine amidase, at 119,510 to 120,550 _01462 BACOVA_01463: BACOVA_01463 - carboxyl transferase domain protein, at 121,160 to 122,695 _01463 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 118.533 kb on - strand, within BACOVA_01461at 118.600 kb on + strand, within BACOVA_01461at 118.601 kb on - strand, within BACOVA_01461at 118.602 kb on + strand, within BACOVA_01461at 118.602 kb on + strand, within BACOVA_01461at 118.602 kb on + strand, within BACOVA_01461at 118.603 kb on - strand, within BACOVA_01461at 118.603 kb on - strand, within BACOVA_01461at 118.603 kb on - strand, within BACOVA_01461at 118.627 kb on + strand, within BACOVA_01461at 118.628 kb on - strand, within BACOVA_01461at 118.629 kb on + strand, within BACOVA_01461at 118.630 kb on - strand, within BACOVA_01461at 118.644 kb on + strand, within BACOVA_01461at 118.720 kb on + strand, within BACOVA_01461at 118.730 kb on + strand, within BACOVA_01461at 118.739 kb on - strand, within BACOVA_01461at 118.755 kb on + strand, within BACOVA_01461at 118.755 kb on + strand, within BACOVA_01461at 118.756 kb on - strand, within BACOVA_01461at 118.756 kb on - strand, within BACOVA_01461at 118.756 kb on - strand, within BACOVA_01461at 118.756 kb on - strand, within BACOVA_01461at 118.766 kb on - strand, within BACOVA_01461at 118.766 kb on - strand, within BACOVA_01461at 118.892 kb on + strand, within BACOVA_01461at 118.928 kb on + strand, within BACOVA_01461at 118.939 kb on + strand, within BACOVA_01461at 119.010 kb on - strand, within BACOVA_01461at 119.010 kb on - strand, within BACOVA_01461at 119.020 kb on + strand, within BACOVA_01461at 119.021 kb on - strand, within BACOVA_01461at 119.021 kb on - strand, within BACOVA_01461at 119.045 kb on - strand, within BACOVA_01461at 119.045 kb on - strand, within BACOVA_01461at 119.053 kb on - strand, within BACOVA_01461at 119.096 kb on - strand, within BACOVA_01461at 119.110 kb on - strand, within BACOVA_01461at 119.110 kb on - strand, within BACOVA_01461at 119.144 kb on - strand, within BACOVA_01461at 119.326 kb on + strandat 119.346 kb on - strandat 119.380 kb on + strandat 119.422 kb on - strandat 119.466 kb on - strandat 119.496 kb on + strandat 119.506 kb on - strandat 119.525 kb on + strandat 119.526 kb on - strandat 119.526 kb on - strandat 119.541 kb on + strandat 119.542 kb on - strandat 119.608 kb on + strandat 119.608 kb on + strandat 119.652 kb on - strand, within BACOVA_01462at 119.707 kb on + strand, within BACOVA_01462at 119.707 kb on + strand, within BACOVA_01462at 119.707 kb on + strand, within BACOVA_01462at 119.708 kb on - strand, within BACOVA_01462at 119.723 kb on + strand, within BACOVA_01462at 119.729 kb on - strand, within BACOVA_01462at 119.729 kb on - strand, within BACOVA_01462at 119.792 kb on - strand, within BACOVA_01462at 119.815 kb on + strand, within BACOVA_01462at 119.891 kb on + strand, within BACOVA_01462at 119.948 kb on + strand, within BACOVA_01462at 119.970 kb on - strand, within BACOVA_01462at 119.976 kb on - strand, within BACOVA_01462at 119.980 kb on + strand, within BACOVA_01462at 119.981 kb on - strand, within BACOVA_01462at 120.001 kb on + strand, within BACOVA_01462at 120.050 kb on - strand, within BACOVA_01462at 120.074 kb on + strand, within BACOVA_01462at 120.089 kb on - strand, within BACOVA_01462at 120.103 kb on + strand, within BACOVA_01462at 120.103 kb on + strand, within BACOVA_01462at 120.104 kb on - strand, within BACOVA_01462at 120.104 kb on - strand, within BACOVA_01462at 120.104 kb on - strand, within BACOVA_01462at 120.104 kb on - strand, within BACOVA_01462at 120.104 kb on - strand, within BACOVA_01462at 120.157 kb on + strand, within BACOVA_01462at 120.194 kb on + strand, within BACOVA_01462at 120.201 kb on - strand, within BACOVA_01462at 120.224 kb on - strand, within BACOVA_01462at 120.236 kb on - strand, within BACOVA_01462at 120.239 kb on - strand, within BACOVA_01462at 120.239 kb on - strand, within BACOVA_01462at 120.267 kb on - strand, within BACOVA_01462at 120.311 kb on - strand, within BACOVA_01462at 120.340 kb on + strand, within BACOVA_01462at 120.341 kb on - strand, within BACOVA_01462at 120.385 kb on + strand, within BACOVA_01462at 120.386 kb on - strand, within BACOVA_01462at 120.391 kb on - strand, within BACOVA_01462at 120.391 kb on - strand, within BACOVA_01462at 120.392 kb on + strand, within BACOVA_01462at 120.397 kb on - strand, within BACOVA_01462at 120.439 kb on + strand, within BACOVA_01462at 120.534 kb on - strandat 120.534 kb on - strandat 120.535 kb on + strandat 120.535 kb on + strandat 120.599 kb on + strandat 120.601 kb on + strandat 120.628 kb on - strandat 120.631 kb on + strandat 120.639 kb on + strandat 120.639 kb on + strandat 120.639 kb on + strandat 120.640 kb on - strandat 120.640 kb on - strandat 120.642 kb on - strandat 120.643 kb on + strandat 120.646 kb on - strandat 120.646 kb on - strandat 120.646 kb on - strandat 120.657 kb on + strandat 120.808 kb on + strandat 120.820 kb on + strandat 120.820 kb on + strandat 120.858 kb on + strandat 120.864 kb on - strandat 120.903 kb on - strandat 120.912 kb on + strandat 120.931 kb on - strandat 120.962 kb on - strandat 121.043 kb on + strandat 121.044 kb on - strandat 121.097 kb on + strandat 121.097 kb on + strandat 121.099 kb on + strandat 121.104 kb on + strandat 121.104 kb on + strandat 121.126 kb on + strandat 121.127 kb on - strandat 121.151 kb on - strandat 121.154 kb on + strandat 121.155 kb on - strandat 121.163 kb on + strandat 121.163 kb on + strandat 121.172 kb on - strandat 121.172 kb on - strandat 121.172 kb on - strandat 121.175 kb on - strandat 121.175 kb on - strandat 121.276 kb on + strandat 121.276 kb on + strandat 121.276 kb on + strandat 121.277 kb on - strandat 121.277 kb on - strandat 121.279 kb on - strandat 121.324 kb on - strand, within BACOVA_01463at 121.375 kb on + strand, within BACOVA_01463at 121.463 kb on + strand, within BACOVA_01463at 121.468 kb on + strand, within BACOVA_01463at 121.470 kb on + strand, within BACOVA_01463at 121.470 kb on + strand, within BACOVA_01463at 121.470 kb on + strand, within BACOVA_01463at 121.470 kb on + strand, within BACOVA_01463at 121.471 kb on - strand, within BACOVA_01463at 121.471 kb on - strand, within BACOVA_01463at 121.471 kb on - strand, within BACOVA_01463at 121.471 kb on - strand, within BACOVA_01463at 121.482 kb on + strand, within BACOVA_01463at 121.537 kb on - strand, within BACOVA_01463at 121.541 kb on + strand, within BACOVA_01463

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C)
remove
118,533 - BACOVA_01461 0.34 +1.5
118,600 + BACOVA_01461 0.39 +0.5
118,601 - BACOVA_01461 0.39 -1.2
118,602 + BACOVA_01461 0.39 -0.0
118,602 + BACOVA_01461 0.39 -1.3
118,602 + BACOVA_01461 0.39 -1.3
118,603 - BACOVA_01461 0.39 -1.8
118,603 - BACOVA_01461 0.39 -0.9
118,603 - BACOVA_01461 0.39 +1.5
118,627 + BACOVA_01461 0.41 +0.2
118,628 - BACOVA_01461 0.41 +1.7
118,629 + BACOVA_01461 0.41 +2.1
118,630 - BACOVA_01461 0.41 +0.7
118,644 + BACOVA_01461 0.42 -1.5
118,720 + BACOVA_01461 0.48 +0.4
118,730 + BACOVA_01461 0.49 +0.1
118,739 - BACOVA_01461 0.50 +0.6
118,755 + BACOVA_01461 0.51 +0.8
118,755 + BACOVA_01461 0.51 -0.7
118,756 - BACOVA_01461 0.51 +1.3
118,756 - BACOVA_01461 0.51 +1.1
118,756 - BACOVA_01461 0.51 -0.3
118,756 - BACOVA_01461 0.51 +0.1
118,766 - BACOVA_01461 0.52 +1.5
118,766 - BACOVA_01461 0.52 +0.9
118,892 + BACOVA_01461 0.62 -1.3
118,928 + BACOVA_01461 0.65 -1.0
118,939 + BACOVA_01461 0.65 -0.9
119,010 - BACOVA_01461 0.71 -0.5
119,010 - BACOVA_01461 0.71 -0.6
119,020 + BACOVA_01461 0.72 -0.3
119,021 - BACOVA_01461 0.72 +0.5
119,021 - BACOVA_01461 0.72 -2.8
119,045 - BACOVA_01461 0.74 -2.4
119,045 - BACOVA_01461 0.74 -0.9
119,053 - BACOVA_01461 0.74 +0.0
119,096 - BACOVA_01461 0.78 -0.3
119,110 - BACOVA_01461 0.79 +2.0
119,110 - BACOVA_01461 0.79 +0.3
119,144 - BACOVA_01461 0.81 +3.3
119,326 + -0.0
119,346 - +0.4
119,380 + -1.4
119,422 - -2.4
119,466 - +2.3
119,496 + -0.9
119,506 - +0.6
119,525 + -1.0
119,526 - +0.8
119,526 - -0.4
119,541 + +1.1
119,542 - +2.1
119,608 + -0.1
119,608 + -2.5
119,652 - BACOVA_01462 0.14 -0.3
119,707 + BACOVA_01462 0.19 +0.1
119,707 + BACOVA_01462 0.19 +2.5
119,707 + BACOVA_01462 0.19 -0.7
119,708 - BACOVA_01462 0.19 -2.2
119,723 + BACOVA_01462 0.20 -1.4
119,729 - BACOVA_01462 0.21 -1.7
119,729 - BACOVA_01462 0.21 +0.1
119,792 - BACOVA_01462 0.27 -1.6
119,815 + BACOVA_01462 0.29 -1.3
119,891 + BACOVA_01462 0.37 -0.4
119,948 + BACOVA_01462 0.42 -0.6
119,970 - BACOVA_01462 0.44 -0.6
119,976 - BACOVA_01462 0.45 -0.2
119,980 + BACOVA_01462 0.45 +0.6
119,981 - BACOVA_01462 0.45 +0.2
120,001 + BACOVA_01462 0.47 +0.2
120,050 - BACOVA_01462 0.52 +1.5
120,074 + BACOVA_01462 0.54 -1.5
120,089 - BACOVA_01462 0.56 -1.5
120,103 + BACOVA_01462 0.57 -0.7
120,103 + BACOVA_01462 0.57 +0.3
120,104 - BACOVA_01462 0.57 +0.9
120,104 - BACOVA_01462 0.57 +3.0
120,104 - BACOVA_01462 0.57 -0.3
120,104 - BACOVA_01462 0.57 -3.3
120,104 - BACOVA_01462 0.57 -1.1
120,157 + BACOVA_01462 0.62 +0.4
120,194 + BACOVA_01462 0.66 +0.6
120,201 - BACOVA_01462 0.66 +0.4
120,224 - BACOVA_01462 0.69 -1.4
120,236 - BACOVA_01462 0.70 -0.4
120,239 - BACOVA_01462 0.70 +0.5
120,239 - BACOVA_01462 0.70 +2.4
120,267 - BACOVA_01462 0.73 -0.3
120,311 - BACOVA_01462 0.77 -0.4
120,340 + BACOVA_01462 0.80 +0.4
120,341 - BACOVA_01462 0.80 +0.5
120,385 + BACOVA_01462 0.84 +2.9
120,386 - BACOVA_01462 0.84 +0.1
120,391 - BACOVA_01462 0.85 +0.5
120,391 - BACOVA_01462 0.85 +0.3
120,392 + BACOVA_01462 0.85 -2.8
120,397 - BACOVA_01462 0.85 +2.3
120,439 + BACOVA_01462 0.89 +2.7
120,534 - +1.0
120,534 - -0.5
120,535 + +0.2
120,535 + -2.8
120,599 + -1.3
120,601 + +0.2
120,628 - +1.9
120,631 + +1.1
120,639 + -0.6
120,639 + -1.2
120,639 + -0.5
120,640 - +1.4
120,640 - +2.2
120,642 - +1.5
120,643 + +1.3
120,646 - -0.1
120,646 - +0.4
120,646 - -2.4
120,657 + -0.7
120,808 + -0.5
120,820 + +0.7
120,820 + +1.2
120,858 + +0.1
120,864 - +0.4
120,903 - -0.3
120,912 + +0.5
120,931 - +0.1
120,962 - +0.9
121,043 + -0.8
121,044 - +1.1
121,097 + -1.0
121,097 + -0.1
121,099 + -0.3
121,104 + -1.1
121,104 + +1.4
121,126 + -1.9
121,127 - +3.4
121,151 - +2.2
121,154 + +0.4
121,155 - -1.2
121,163 + -1.5
121,163 + -0.1
121,172 - -0.2
121,172 - -2.1
121,172 - +1.3
121,175 - -0.1
121,175 - -0.6
121,276 + -0.5
121,276 + -0.5
121,276 + +0.1
121,277 - -0.5
121,277 - +1.4
121,279 - -0.9
121,324 - BACOVA_01463 0.11 +2.4
121,375 + BACOVA_01463 0.14 +0.5
121,463 + BACOVA_01463 0.20 -0.9
121,468 + BACOVA_01463 0.20 +0.0
121,470 + BACOVA_01463 0.20 +3.1
121,470 + BACOVA_01463 0.20 +0.9
121,470 + BACOVA_01463 0.20 -1.3
121,470 + BACOVA_01463 0.20 +1.2
121,471 - BACOVA_01463 0.20 -1.2
121,471 - BACOVA_01463 0.20 -0.1
121,471 - BACOVA_01463 0.20 +0.1
121,471 - BACOVA_01463 0.20 +2.4
121,482 + BACOVA_01463 0.21 -0.1
121,537 - BACOVA_01463 0.25 -0.8
121,541 + BACOVA_01463 0.25 +0.7

Or see this region's nucleotide sequence