Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00829 and BACOVA_00830 are separated by 12 nucleotides BACOVA_00830 and BACOVA_00831 are separated by 39 nucleotides BACOVA_00831 and BACOVA_00832 are separated by 162 nucleotides
BACOVA_00829: BACOVA_00829 - hypothetical protein, at 79,832 to 81,055
_00829
BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549
_00830
BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188
_00831
BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842
_00832
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 80.123 kb on + strand, within BACOVA_00829 at 80.128 kb on + strand, within BACOVA_00829 at 80.186 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.329 kb on + strand, within BACOVA_00829 at 80.382 kb on - strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.410 kb on + strand, within BACOVA_00829 at 80.451 kb on + strand, within BACOVA_00829 at 80.512 kb on + strand, within BACOVA_00829 at 80.609 kb on - strand, within BACOVA_00829 at 80.620 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.832 kb on - strand, within BACOVA_00829 at 80.854 kb on - strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.878 kb on - strand, within BACOVA_00829 at 80.922 kb on + strand, within BACOVA_00829 at 80.923 kb on - strand, within BACOVA_00829 at 80.931 kb on - strand, within BACOVA_00829 at 80.973 kb on - strand at 80.973 kb on - strand at 81.006 kb on - strand at 81.055 kb on + strand at 81.056 kb on - strand at 81.056 kb on - strand at 81.057 kb on + strand at 81.057 kb on + strand at 81.058 kb on - strand at 81.058 kb on - strand at 81.059 kb on + strand at 81.179 kb on - strand at 81.180 kb on + strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.232 kb on + strand, within BACOVA_00830 at 81.233 kb on - strand, within BACOVA_00830 at 81.252 kb on - strand, within BACOVA_00830 at 81.445 kb on + strand, within BACOVA_00830 at 81.455 kb on - strand, within BACOVA_00830 at 81.519 kb on + strand, within BACOVA_00830 at 81.527 kb on - strand, within BACOVA_00830 at 81.529 kb on + strand, within BACOVA_00830 at 81.530 kb on - strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.584 kb on - strand, within BACOVA_00830 at 81.637 kb on + strand, within BACOVA_00830 at 81.640 kb on - strand, within BACOVA_00830 at 81.749 kb on - strand, within BACOVA_00830 at 81.754 kb on + strand, within BACOVA_00830 at 81.755 kb on - strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.757 kb on - strand, within BACOVA_00830 at 81.762 kb on + strand, within BACOVA_00830 at 81.763 kb on - strand, within BACOVA_00830 at 81.780 kb on + strand, within BACOVA_00830 at 81.781 kb on - strand, within BACOVA_00830 at 81.783 kb on + strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.800 kb on + strand, within BACOVA_00830 at 81.806 kb on - strand, within BACOVA_00830 at 81.834 kb on + strand, within BACOVA_00830 at 81.838 kb on + strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.907 kb on + strand, within BACOVA_00830 at 81.913 kb on + strand, within BACOVA_00830 at 81.948 kb on - strand, within BACOVA_00830 at 81.967 kb on + strand, within BACOVA_00830 at 81.968 kb on - strand, within BACOVA_00830 at 82.036 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.054 kb on + strand, within BACOVA_00830 at 82.055 kb on - strand, within BACOVA_00830 at 82.056 kb on + strand, within BACOVA_00830 at 82.056 kb on + strand, within BACOVA_00830 at 82.056 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.108 kb on + strand, within BACOVA_00830 at 82.109 kb on - strand, within BACOVA_00830 at 82.180 kb on + strand, within BACOVA_00830 at 82.184 kb on - strand, within BACOVA_00830 at 82.240 kb on - strand, within BACOVA_00830 at 82.240 kb on - strand, within BACOVA_00830 at 82.250 kb on + strand, within BACOVA_00830 at 82.287 kb on - strand, within BACOVA_00830 at 82.294 kb on + strand, within BACOVA_00830 at 82.294 kb on + strand, within BACOVA_00830 at 82.294 kb on + strand, within BACOVA_00830 at 82.351 kb on - strand, within BACOVA_00830 at 82.373 kb on - strand, within BACOVA_00830 at 82.488 kb on - strand at 82.488 kb on - strand at 82.552 kb on + strand at 82.552 kb on + strand at 82.552 kb on + strand at 82.553 kb on - strand at 82.553 kb on - strand at 82.571 kb on + strand at 82.572 kb on - strand at 82.574 kb on + strand at 82.575 kb on - strand at 82.594 kb on + strand at 82.739 kb on + strand, within BACOVA_00831 at 82.753 kb on + strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.755 kb on + strand, within BACOVA_00831 at 82.787 kb on - strand, within BACOVA_00831 at 82.798 kb on + strand, within BACOVA_00831 at 82.822 kb on + strand, within BACOVA_00831 at 82.823 kb on - strand, within BACOVA_00831 at 82.877 kb on - strand, within BACOVA_00831 at 82.900 kb on + strand, within BACOVA_00831 at 82.915 kb on + strand, within BACOVA_00831 at 82.990 kb on + strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.011 kb on - strand, within BACOVA_00831 at 83.062 kb on - strand, within BACOVA_00831 at 83.065 kb on + strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.080 kb on + strand, within BACOVA_00831 at 83.081 kb on - strand, within BACOVA_00831 at 83.082 kb on + strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.086 kb on + strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.146 kb on + strand at 83.148 kb on + strand at 83.189 kb on - strand at 83.213 kb on + strand at 83.241 kb on + strand at 83.241 kb on + strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.246 kb on - strand at 83.276 kb on + strand at 83.281 kb on - strand at 83.344 kb on + strand at 83.352 kb on + strand at 83.389 kb on + strand at 83.416 kb on - strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.509 kb on + strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 80,123 + BACOVA_00829 0.24 -0.9 80,128 + BACOVA_00829 0.24 -0.1 80,186 + BACOVA_00829 0.29 +0.0 80,244 + BACOVA_00829 0.34 -0.3 80,244 + BACOVA_00829 0.34 -1.7 80,245 - BACOVA_00829 0.34 +0.0 80,245 - BACOVA_00829 0.34 +2.0 80,329 + BACOVA_00829 0.41 +0.1 80,382 - BACOVA_00829 0.45 +1.4 80,387 + BACOVA_00829 0.45 -0.7 80,387 + BACOVA_00829 0.45 +0.1 80,388 - BACOVA_00829 0.45 -1.8 80,388 - BACOVA_00829 0.45 -1.4 80,388 - BACOVA_00829 0.45 -0.6 80,410 + BACOVA_00829 0.47 +0.9 80,451 + BACOVA_00829 0.51 -0.9 80,512 + BACOVA_00829 0.56 -0.6 80,609 - BACOVA_00829 0.63 -1.3 80,620 + BACOVA_00829 0.64 -2.0 80,831 + BACOVA_00829 0.82 +1.3 80,831 + BACOVA_00829 0.82 -0.7 80,832 - BACOVA_00829 0.82 -0.2 80,854 - BACOVA_00829 0.83 +1.3 80,877 + BACOVA_00829 0.85 -1.7 80,877 + BACOVA_00829 0.85 +0.4 80,878 - BACOVA_00829 0.85 -2.5 80,922 + BACOVA_00829 0.89 +2.3 80,923 - BACOVA_00829 0.89 +2.0 80,931 - BACOVA_00829 0.90 +1.4 80,973 - -1.5 80,973 - -0.3 81,006 - -2.4 81,055 + +0.4 81,056 - +1.0 81,056 - +1.1 81,057 + -0.5 81,057 + +3.2 81,058 - -1.1 81,058 - +0.1 81,059 + -0.7 81,179 - -0.1 81,180 + -0.9 81,181 - -2.9 81,181 - -2.5 81,232 + BACOVA_00830 0.11 +1.9 81,233 - BACOVA_00830 0.11 -1.5 81,252 - BACOVA_00830 0.12 +0.1 81,445 + BACOVA_00830 0.25 -0.9 81,455 - BACOVA_00830 0.26 -1.4 81,519 + BACOVA_00830 0.30 +0.1 81,527 - BACOVA_00830 0.31 -0.9 81,529 + BACOVA_00830 0.31 +1.2 81,530 - BACOVA_00830 0.31 -0.4 81,533 + BACOVA_00830 0.31 -0.1 81,533 + BACOVA_00830 0.31 +0.2 81,584 - BACOVA_00830 0.35 -0.7 81,637 + BACOVA_00830 0.38 +0.5 81,640 - BACOVA_00830 0.39 +1.6 81,749 - BACOVA_00830 0.46 +0.2 81,754 + BACOVA_00830 0.46 +1.8 81,755 - BACOVA_00830 0.46 -0.4 81,756 + BACOVA_00830 0.46 -0.5 81,756 + BACOVA_00830 0.46 -0.5 81,756 + BACOVA_00830 0.46 -0.3 81,757 - BACOVA_00830 0.46 +0.4 81,762 + BACOVA_00830 0.47 +2.2 81,763 - BACOVA_00830 0.47 +0.1 81,780 + BACOVA_00830 0.48 +1.4 81,781 - BACOVA_00830 0.48 -0.7 81,783 + BACOVA_00830 0.48 +3.0 81,784 - BACOVA_00830 0.48 +1.3 81,784 - BACOVA_00830 0.48 -0.3 81,800 + BACOVA_00830 0.49 -1.1 81,806 - BACOVA_00830 0.50 -0.6 81,834 + BACOVA_00830 0.52 +2.4 81,838 + BACOVA_00830 0.52 -0.1 81,839 - BACOVA_00830 0.52 -1.4 81,839 - BACOVA_00830 0.52 -0.8 81,839 - BACOVA_00830 0.52 +1.2 81,881 + BACOVA_00830 0.55 +1.7 81,881 + BACOVA_00830 0.55 -0.4 81,907 + BACOVA_00830 0.57 -0.8 81,913 + BACOVA_00830 0.57 -0.6 81,948 - BACOVA_00830 0.59 -1.2 81,967 + BACOVA_00830 0.61 -1.2 81,968 - BACOVA_00830 0.61 +1.2 82,036 + BACOVA_00830 0.65 -0.6 82,048 + BACOVA_00830 0.66 -0.4 82,048 + BACOVA_00830 0.66 -0.5 82,048 + BACOVA_00830 0.66 -0.6 82,049 - BACOVA_00830 0.66 +1.1 82,049 - BACOVA_00830 0.66 +0.2 82,054 + BACOVA_00830 0.67 +0.8 82,055 - BACOVA_00830 0.67 +0.0 82,056 + BACOVA_00830 0.67 +0.4 82,056 + BACOVA_00830 0.67 +1.6 82,056 + BACOVA_00830 0.67 -0.8 82,108 + BACOVA_00830 0.70 +0.0 82,108 + BACOVA_00830 0.70 +1.2 82,108 + BACOVA_00830 0.70 -1.7 82,108 + BACOVA_00830 0.70 -0.8 82,109 - BACOVA_00830 0.70 -0.6 82,180 + BACOVA_00830 0.75 -1.0 82,184 - BACOVA_00830 0.75 -0.8 82,240 - BACOVA_00830 0.79 +1.0 82,240 - BACOVA_00830 0.79 -0.9 82,250 + BACOVA_00830 0.80 +2.1 82,287 - BACOVA_00830 0.82 +0.2 82,294 + BACOVA_00830 0.83 -1.6 82,294 + BACOVA_00830 0.83 -1.0 82,294 + BACOVA_00830 0.83 -2.4 82,351 - BACOVA_00830 0.87 -0.5 82,373 - BACOVA_00830 0.88 +0.1 82,488 - -0.3 82,488 - +0.4 82,552 + +1.5 82,552 + +1.4 82,552 + -1.7 82,553 - +0.8 82,553 - +1.3 82,571 + +2.9 82,572 - -0.4 82,574 + -2.6 82,575 - +0.9 82,594 + -0.4 82,739 + BACOVA_00831 0.25 +0.7 82,753 + BACOVA_00831 0.27 -1.7 82,754 - BACOVA_00831 0.28 -0.4 82,754 - BACOVA_00831 0.28 -1.4 82,754 - BACOVA_00831 0.28 +0.2 82,755 + BACOVA_00831 0.28 +3.5 82,787 - BACOVA_00831 0.33 -0.4 82,798 + BACOVA_00831 0.35 -0.8 82,822 + BACOVA_00831 0.39 -0.8 82,823 - BACOVA_00831 0.39 +0.4 82,877 - BACOVA_00831 0.48 -1.4 82,900 + BACOVA_00831 0.52 +1.4 82,915 + BACOVA_00831 0.54 -2.1 82,990 + BACOVA_00831 0.67 +0.7 83,008 - BACOVA_00831 0.70 +0.8 83,008 - BACOVA_00831 0.70 +2.8 83,008 - BACOVA_00831 0.70 -2.4 83,011 - BACOVA_00831 0.70 -0.2 83,062 - BACOVA_00831 0.79 +0.7 83,065 + BACOVA_00831 0.79 -0.3 83,066 - BACOVA_00831 0.80 +2.2 83,066 - BACOVA_00831 0.80 +0.9 83,066 - BACOVA_00831 0.80 +2.4 83,066 - BACOVA_00831 0.80 +1.2 83,080 + BACOVA_00831 0.82 -1.0 83,081 - BACOVA_00831 0.82 +2.8 83,082 + BACOVA_00831 0.82 -2.3 83,083 - BACOVA_00831 0.82 +0.1 83,083 - BACOVA_00831 0.82 +1.6 83,083 - BACOVA_00831 0.82 -2.0 83,083 - BACOVA_00831 0.82 -1.9 83,086 + BACOVA_00831 0.83 +0.5 83,087 - BACOVA_00831 0.83 +0.0 83,087 - BACOVA_00831 0.83 +2.1 83,087 - BACOVA_00831 0.83 -0.2 83,087 - BACOVA_00831 0.83 -0.9 83,146 + +0.6 83,148 + -0.5 83,189 - -0.3 83,213 + -1.2 83,241 + -0.1 83,241 + -0.3 83,242 - +3.1 83,242 - +1.7 83,242 - +1.4 83,246 - +1.2 83,276 + -0.3 83,281 - +5.3 83,344 + +0.5 83,352 + -2.0 83,389 + +1.7 83,416 - BACOVA_00832 0.13 -0.7 83,489 + BACOVA_00832 0.28 +0.7 83,489 + BACOVA_00832 0.28 +0.7 83,490 - BACOVA_00832 0.28 -1.6 83,490 - BACOVA_00832 0.28 -0.2 83,509 + BACOVA_00832 0.32 -0.4 83,510 - BACOVA_00832 0.32 -0.4 83,510 - BACOVA_00832 0.32 -0.4 83,510 - BACOVA_00832 0.32 +0.0 83,538 + BACOVA_00832 0.38 -0.9 83,538 + BACOVA_00832 0.38 -0.1 83,539 - BACOVA_00832 0.38 +0.9 83,539 - BACOVA_00832 0.38 +2.9
Or see this region's nucleotide sequence