Experiment: amylopectin from maize 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00521 and BACOVA_00522 are separated by 6 nucleotides BACOVA_00522 and BACOVA_00523 are separated by 275 nucleotides BACOVA_00523 and BACOVA_00524 are separated by 65 nucleotides BACOVA_00524 and BACOVA_00525 are separated by 28 nucleotides
BACOVA_00521: BACOVA_00521 - hypothetical protein, at 20,301 to 21,728
_00521
BACOVA_00522: BACOVA_00522 - hypothetical protein, at 21,735 to 21,881
_00522
BACOVA_00523: BACOVA_00523 - tRNA-Ser, at 22,157 to 22,243
_00523
BACOVA_00524: BACOVA_00524 - tRNA-Glu, at 22,309 to 22,380
_00524
BACOVA_00525: BACOVA_00525 - hypothetical protein, at 22,409 to 23,230
_00525
Position (kb)
21
22 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 20.745 kb on - strand, within BACOVA_00521 at 20.745 kb on - strand, within BACOVA_00521 at 20.774 kb on + strand, within BACOVA_00521 at 20.846 kb on + strand, within BACOVA_00521 at 20.946 kb on - strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.994 kb on - strand, within BACOVA_00521 at 20.996 kb on - strand, within BACOVA_00521 at 21.050 kb on + strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.134 kb on - strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.255 kb on - strand, within BACOVA_00521 at 21.292 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.336 kb on + strand, within BACOVA_00521 at 21.419 kb on - strand, within BACOVA_00521 at 21.446 kb on + strand, within BACOVA_00521 at 21.496 kb on - strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.553 kb on + strand, within BACOVA_00521 at 21.554 kb on - strand, within BACOVA_00521 at 21.569 kb on - strand, within BACOVA_00521 at 21.569 kb on - strand, within BACOVA_00521 at 21.600 kb on + strand at 21.600 kb on + strand at 21.601 kb on - strand at 21.601 kb on - strand at 21.614 kb on - strand at 21.639 kb on + strand at 21.650 kb on - strand at 21.851 kb on + strand, within BACOVA_00522 at 21.855 kb on + strand, within BACOVA_00522 at 21.888 kb on + strand at 21.917 kb on - strand at 21.934 kb on + strand at 21.943 kb on + strand at 22.043 kb on - strand at 22.050 kb on + strand at 22.051 kb on - strand at 22.257 kb on + strand at 22.258 kb on - strand at 22.277 kb on - strand at 22.292 kb on + strand at 22.298 kb on + strand at 22.299 kb on - strand at 22.352 kb on + strand, within BACOVA_00524 at 22.353 kb on - strand, within BACOVA_00524 at 22.380 kb on - strand at 22.406 kb on + strand at 22.410 kb on + strand at 22.410 kb on + strand at 22.431 kb on + strand at 22.518 kb on + strand, within BACOVA_00525 at 22.518 kb on + strand, within BACOVA_00525 at 22.518 kb on + strand, within BACOVA_00525 at 22.519 kb on - strand, within BACOVA_00525 at 22.519 kb on - strand, within BACOVA_00525 at 22.552 kb on - strand, within BACOVA_00525 at 22.552 kb on - strand, within BACOVA_00525 at 22.555 kb on + strand, within BACOVA_00525 at 22.556 kb on - strand, within BACOVA_00525 at 22.645 kb on + strand, within BACOVA_00525 at 22.646 kb on - strand, within BACOVA_00525 at 22.673 kb on + strand, within BACOVA_00525 at 22.683 kb on + strand, within BACOVA_00525 at 22.684 kb on - strand, within BACOVA_00525 at 22.684 kb on - strand, within BACOVA_00525 at 22.687 kb on + strand, within BACOVA_00525 at 22.688 kb on - strand, within BACOVA_00525 at 22.715 kb on + strand, within BACOVA_00525 at 22.778 kb on - strand, within BACOVA_00525 at 22.780 kb on - strand, within BACOVA_00525 at 22.806 kb on + strand, within BACOVA_00525 at 22.820 kb on - strand, within BACOVA_00525 at 22.820 kb on - strand, within BACOVA_00525 at 22.820 kb on - strand, within BACOVA_00525 at 22.861 kb on + strand, within BACOVA_00525 at 22.861 kb on + strand, within BACOVA_00525
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/mL (C) remove 20,745 - BACOVA_00521 0.31 +0.9 20,745 - BACOVA_00521 0.31 -1.5 20,774 + BACOVA_00521 0.33 +1.6 20,846 + BACOVA_00521 0.38 -0.1 20,946 - BACOVA_00521 0.45 -2.8 20,993 + BACOVA_00521 0.48 +2.2 20,993 + BACOVA_00521 0.48 -0.8 20,994 - BACOVA_00521 0.49 +0.1 20,996 - BACOVA_00521 0.49 -0.5 21,050 + BACOVA_00521 0.52 +0.5 21,076 - BACOVA_00521 0.54 +0.3 21,076 - BACOVA_00521 0.54 +2.7 21,076 - BACOVA_00521 0.54 -1.1 21,134 - BACOVA_00521 0.58 -0.8 21,254 + BACOVA_00521 0.67 +4.3 21,254 + BACOVA_00521 0.67 +1.7 21,255 - BACOVA_00521 0.67 +3.0 21,292 + BACOVA_00521 0.69 -2.3 21,319 + BACOVA_00521 0.71 -0.3 21,319 + BACOVA_00521 0.71 -0.5 21,320 - BACOVA_00521 0.71 +0.9 21,320 - BACOVA_00521 0.71 -1.6 21,336 + BACOVA_00521 0.72 -0.6 21,419 - BACOVA_00521 0.78 -0.5 21,446 + BACOVA_00521 0.80 +1.2 21,496 - BACOVA_00521 0.84 +1.0 21,497 + BACOVA_00521 0.84 -0.4 21,497 + BACOVA_00521 0.84 +3.9 21,497 + BACOVA_00521 0.84 -1.1 21,498 - BACOVA_00521 0.84 -0.1 21,498 - BACOVA_00521 0.84 -1.4 21,498 - BACOVA_00521 0.84 -0.3 21,553 + BACOVA_00521 0.88 +3.5 21,554 - BACOVA_00521 0.88 +2.0 21,569 - BACOVA_00521 0.89 +0.5 21,569 - BACOVA_00521 0.89 +0.5 21,600 + -0.3 21,600 + -1.9 21,601 - +1.1 21,601 - -0.4 21,614 - +2.3 21,639 + -0.1 21,650 - +0.9 21,851 + BACOVA_00522 0.79 -0.8 21,855 + BACOVA_00522 0.82 -0.1 21,888 + +0.4 21,917 - -0.3 21,934 + -1.0 21,943 + -0.8 22,043 - -1.1 22,050 + +1.7 22,051 - -0.5 22,257 + +0.5 22,258 - -0.5 22,277 - -1.0 22,292 + +0.2 22,298 + +1.1 22,299 - -0.7 22,352 + BACOVA_00524 0.60 +3.3 22,353 - BACOVA_00524 0.61 +2.0 22,380 - +0.7 22,406 + -1.6 22,410 + +1.5 22,410 + -1.5 22,431 + +0.2 22,518 + BACOVA_00525 0.13 -0.3 22,518 + BACOVA_00525 0.13 -1.1 22,518 + BACOVA_00525 0.13 -0.8 22,519 - BACOVA_00525 0.13 +2.3 22,519 - BACOVA_00525 0.13 +0.3 22,552 - BACOVA_00525 0.17 +0.9 22,552 - BACOVA_00525 0.17 -2.1 22,555 + BACOVA_00525 0.18 -0.8 22,556 - BACOVA_00525 0.18 +1.7 22,645 + BACOVA_00525 0.29 -2.0 22,646 - BACOVA_00525 0.29 +0.6 22,673 + BACOVA_00525 0.32 +3.4 22,683 + BACOVA_00525 0.33 -1.0 22,684 - BACOVA_00525 0.33 -0.3 22,684 - BACOVA_00525 0.33 +0.2 22,687 + BACOVA_00525 0.34 -1.0 22,688 - BACOVA_00525 0.34 -1.4 22,715 + BACOVA_00525 0.37 -0.6 22,778 - BACOVA_00525 0.45 +0.3 22,780 - BACOVA_00525 0.45 -0.9 22,806 + BACOVA_00525 0.48 +1.1 22,820 - BACOVA_00525 0.50 -0.8 22,820 - BACOVA_00525 0.50 +0.2 22,820 - BACOVA_00525 0.50 -0.4 22,861 + BACOVA_00525 0.55 +0.2 22,861 + BACOVA_00525 0.55 -0.5
Or see this region's nucleotide sequence