Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01740

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01739 and MPMX26_01740 overlap by 1 nucleotidesMPMX26_01740 and MPMX26_01741 are separated by 7 nucleotides MPMX26_01739: MPMX26_01739 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,794,807 to 1,795,838 _01739 MPMX26_01740: MPMX26_01740 - hypothetical protein, at 1,795,838 to 1,796,977 _01740 MPMX26_01741: MPMX26_01741 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,796,985 to 1,798,067 _01741 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -2 -1 0 1at 1794.854 kb on - strandat 1794.881 kb on - strandat 1794.912 kb on - strand, within MPMX26_01739at 1794.927 kb on - strand, within MPMX26_01739at 1794.927 kb on - strand, within MPMX26_01739at 1794.976 kb on - strand, within MPMX26_01739at 1794.993 kb on - strand, within MPMX26_01739at 1794.993 kb on - strand, within MPMX26_01739at 1794.998 kb on - strand, within MPMX26_01739at 1794.998 kb on - strand, within MPMX26_01739at 1794.998 kb on - strand, within MPMX26_01739at 1795.046 kb on - strand, within MPMX26_01739at 1795.065 kb on - strand, within MPMX26_01739at 1795.065 kb on - strand, within MPMX26_01739at 1795.226 kb on - strand, within MPMX26_01739at 1795.295 kb on + strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.344 kb on - strand, within MPMX26_01739at 1795.349 kb on - strand, within MPMX26_01739at 1795.354 kb on - strand, within MPMX26_01739at 1795.382 kb on - strand, within MPMX26_01739at 1795.490 kb on - strand, within MPMX26_01739at 1795.506 kb on - strand, within MPMX26_01739at 1795.506 kb on - strand, within MPMX26_01739at 1795.506 kb on - strand, within MPMX26_01739at 1795.556 kb on - strand, within MPMX26_01739at 1795.563 kb on - strand, within MPMX26_01739at 1795.578 kb on - strand, within MPMX26_01739at 1795.649 kb on - strand, within MPMX26_01739at 1795.676 kb on - strand, within MPMX26_01739at 1795.722 kb on - strand, within MPMX26_01739at 1795.787 kb on - strandat 1795.844 kb on - strandat 1795.844 kb on - strandat 1795.844 kb on - strandat 1795.844 kb on - strandat 1795.972 kb on - strand, within MPMX26_01740at 1795.972 kb on - strand, within MPMX26_01740at 1796.003 kb on - strand, within MPMX26_01740at 1796.008 kb on - strand, within MPMX26_01740at 1796.051 kb on - strand, within MPMX26_01740at 1796.062 kb on - strand, within MPMX26_01740at 1796.123 kb on - strand, within MPMX26_01740at 1796.125 kb on - strand, within MPMX26_01740at 1796.125 kb on - strand, within MPMX26_01740at 1796.918 kb on - strandat 1796.920 kb on - strandat 1796.969 kb on - strandat 1796.981 kb on - strandat 1796.981 kb on - strandat 1796.981 kb on - strandat 1796.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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1,794,854 - -0.1
1,794,881 - +1.2
1,794,912 - MPMX26_01739 0.10 +0.2
1,794,927 - MPMX26_01739 0.12 +0.1
1,794,927 - MPMX26_01739 0.12 -0.5
1,794,976 - MPMX26_01739 0.16 +0.6
1,794,993 - MPMX26_01739 0.18 +0.8
1,794,993 - MPMX26_01739 0.18 +0.5
1,794,998 - MPMX26_01739 0.19 +0.3
1,794,998 - MPMX26_01739 0.19 +0.4
1,794,998 - MPMX26_01739 0.19 +0.1
1,795,046 - MPMX26_01739 0.23 -0.0
1,795,065 - MPMX26_01739 0.25 -0.2
1,795,065 - MPMX26_01739 0.25 +0.5
1,795,226 - MPMX26_01739 0.41 -0.3
1,795,295 + MPMX26_01739 0.47 -0.2
1,795,344 - MPMX26_01739 0.52 +0.3
1,795,344 - MPMX26_01739 0.52 +0.4
1,795,344 - MPMX26_01739 0.52 -0.1
1,795,344 - MPMX26_01739 0.52 +0.7
1,795,344 - MPMX26_01739 0.52 +0.4
1,795,344 - MPMX26_01739 0.52 +0.4
1,795,344 - MPMX26_01739 0.52 +0.5
1,795,344 - MPMX26_01739 0.52 +0.3
1,795,344 - MPMX26_01739 0.52 +0.0
1,795,344 - MPMX26_01739 0.52 +0.5
1,795,349 - MPMX26_01739 0.53 +0.1
1,795,354 - MPMX26_01739 0.53 -1.7
1,795,382 - MPMX26_01739 0.56 +0.6
1,795,490 - MPMX26_01739 0.66 +0.2
1,795,506 - MPMX26_01739 0.68 +0.3
1,795,506 - MPMX26_01739 0.68 +0.4
1,795,506 - MPMX26_01739 0.68 -0.6
1,795,556 - MPMX26_01739 0.73 +0.6
1,795,563 - MPMX26_01739 0.73 +0.2
1,795,578 - MPMX26_01739 0.75 +1.3
1,795,649 - MPMX26_01739 0.82 +0.6
1,795,676 - MPMX26_01739 0.84 -0.5
1,795,722 - MPMX26_01739 0.89 +0.2
1,795,787 - +0.9
1,795,844 - +0.6
1,795,844 - +0.3
1,795,844 - +0.6
1,795,844 - -0.2
1,795,972 - MPMX26_01740 0.12 -2.2
1,795,972 - MPMX26_01740 0.12 -1.2
1,796,003 - MPMX26_01740 0.14 -0.8
1,796,008 - MPMX26_01740 0.15 -2.2
1,796,051 - MPMX26_01740 0.19 -2.5
1,796,062 - MPMX26_01740 0.20 -1.8
1,796,123 - MPMX26_01740 0.25 -0.6
1,796,125 - MPMX26_01740 0.25 -1.4
1,796,125 - MPMX26_01740 0.25 -1.9
1,796,918 - -1.6
1,796,920 - -0.8
1,796,969 - -1.7
1,796,981 - -0.0
1,796,981 - +0.0
1,796,981 - +0.3
1,796,981 - -0.2

Or see this region's nucleotide sequence