Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01027 and MPMX26_01028 are separated by 73 nucleotides MPMX26_01028 and MPMX26_01029 are separated by 175 nucleotides MPMX26_01029 and MPMX26_01030 are separated by 137 nucleotides
MPMX26_01027: MPMX26_01027 - RNA polymerase-associated protein RapA, at 1,085,265 to 1,088,093
_01027
MPMX26_01028: MPMX26_01028 - hypothetical protein, at 1,088,167 to 1,088,556
_01028
MPMX26_01029: MPMX26_01029 - HTH-type transcriptional repressor FabR, at 1,088,732 to 1,089,427
_01029
MPMX26_01030: MPMX26_01030 - NADPH oxidoreductase, at 1,089,565 to 1,090,620
_01030
Position (kb)
1088
1089
1090 Strain fitness (log2 ratio)
-2
-1
0
1 at 1087.795 kb on + strand, within MPMX26_01027 at 1087.814 kb on + strand at 1087.837 kb on + strand at 1087.873 kb on + strand at 1087.883 kb on + strand at 1087.964 kb on + strand at 1087.985 kb on + strand at 1088.017 kb on + strand at 1088.022 kb on + strand at 1088.022 kb on + strand at 1088.041 kb on + strand at 1088.042 kb on + strand at 1088.048 kb on + strand at 1088.717 kb on - strand at 1088.763 kb on - strand at 1088.863 kb on - strand, within MPMX26_01029 at 1088.899 kb on - strand, within MPMX26_01029 at 1088.917 kb on - strand, within MPMX26_01029 at 1088.941 kb on - strand, within MPMX26_01029 at 1088.941 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.016 kb on - strand, within MPMX26_01029 at 1089.043 kb on - strand, within MPMX26_01029 at 1089.074 kb on - strand, within MPMX26_01029 at 1089.091 kb on - strand, within MPMX26_01029 at 1089.101 kb on - strand, within MPMX26_01029 at 1089.119 kb on - strand, within MPMX26_01029 at 1089.119 kb on - strand, within MPMX26_01029 at 1089.119 kb on - strand, within MPMX26_01029 at 1089.121 kb on - strand, within MPMX26_01029 at 1089.121 kb on - strand, within MPMX26_01029 at 1089.153 kb on - strand, within MPMX26_01029 at 1089.160 kb on - strand, within MPMX26_01029 at 1089.167 kb on - strand, within MPMX26_01029 at 1089.177 kb on - strand, within MPMX26_01029 at 1089.308 kb on - strand, within MPMX26_01029 at 1089.395 kb on - strand at 1089.402 kb on - strand at 1089.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 1,087,795 + MPMX26_01027 0.89 +1.4 1,087,814 + -0.4 1,087,837 + +0.1 1,087,873 + -0.8 1,087,883 + -0.4 1,087,964 + -0.9 1,087,985 + -0.2 1,088,017 + -0.7 1,088,022 + -0.1 1,088,022 + -0.4 1,088,041 + -0.4 1,088,042 + -0.8 1,088,048 + -0.6 1,088,717 - +0.7 1,088,763 - -0.0 1,088,863 - MPMX26_01029 0.19 -1.9 1,088,899 - MPMX26_01029 0.24 -1.0 1,088,917 - MPMX26_01029 0.27 -0.5 1,088,941 - MPMX26_01029 0.30 -1.1 1,088,941 - MPMX26_01029 0.30 -1.4 1,089,016 - MPMX26_01029 0.41 -0.5 1,089,016 - MPMX26_01029 0.41 -0.8 1,089,016 - MPMX26_01029 0.41 -1.1 1,089,016 - MPMX26_01029 0.41 -1.4 1,089,016 - MPMX26_01029 0.41 -1.7 1,089,016 - MPMX26_01029 0.41 -0.8 1,089,016 - MPMX26_01029 0.41 -0.4 1,089,016 - MPMX26_01029 0.41 -2.6 1,089,016 - MPMX26_01029 0.41 -1.6 1,089,016 - MPMX26_01029 0.41 -1.1 1,089,016 - MPMX26_01029 0.41 -0.8 1,089,043 - MPMX26_01029 0.45 -1.8 1,089,074 - MPMX26_01029 0.49 -1.0 1,089,091 - MPMX26_01029 0.52 -0.6 1,089,101 - MPMX26_01029 0.53 -0.7 1,089,119 - MPMX26_01029 0.56 -0.3 1,089,119 - MPMX26_01029 0.56 -0.9 1,089,119 - MPMX26_01029 0.56 -1.2 1,089,121 - MPMX26_01029 0.56 -1.7 1,089,121 - MPMX26_01029 0.56 -1.5 1,089,153 - MPMX26_01029 0.60 -0.9 1,089,160 - MPMX26_01029 0.61 -0.5 1,089,167 - MPMX26_01029 0.62 -1.5 1,089,177 - MPMX26_01029 0.64 -1.7 1,089,308 - MPMX26_01029 0.83 -1.2 1,089,395 - -1.3 1,089,402 - -0.7 1,089,402 - -0.5
Or see this region's nucleotide sequence