Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00724 and MPMX26_00725 are separated by 36 nucleotides MPMX26_00725 and MPMX26_00726 are separated by 91 nucleotides MPMX26_00726 and MPMX26_00727 are separated by 20 nucleotides MPMX26_00727 and MPMX26_00728 are separated by 27 nucleotides MPMX26_00728 and MPMX26_00729 are separated by 1 nucleotides MPMX26_00729 and MPMX26_00730 are separated by 25 nucleotides
MPMX26_00724: MPMX26_00724 - Ribose-phosphate pyrophosphokinase, at 765,187 to 766,140
_00724
MPMX26_00725: MPMX26_00725 - tRNA-Gln, at 766,177 to 766,251
_00725
MPMX26_00726: MPMX26_00726 - tRNA-Gln, at 766,343 to 766,417
_00726
MPMX26_00727: MPMX26_00727 - tRNA-Gln, at 766,438 to 766,512
_00727
MPMX26_00728: MPMX26_00728 - tRNA-Gln, at 766,540 to 766,614
_00728
MPMX26_00729: MPMX26_00729 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 766,616 to 767,446
_00729
MPMX26_00730: MPMX26_00730 - Outer-membrane lipoprotein LolB, at 767,472 to 768,047
_00730
Position (kb) 766
767 Strain fitness (log2 ratio) -1
0
1 at 766.367 kb on - strand, within MPMX26_00726 at 766.388 kb on - strand, within MPMX26_00726 at 766.389 kb on - strand, within MPMX26_00726 at 766.402 kb on - strand, within MPMX26_00726 at 766.402 kb on - strand, within MPMX26_00726 at 766.403 kb on - strand, within MPMX26_00726 at 766.403 kb on - strand, within MPMX26_00726 at 766.403 kb on - strand, within MPMX26_00726 at 766.446 kb on - strand, within MPMX26_00727 at 766.467 kb on - strand, within MPMX26_00727 at 767.450 kb on + strand at 767.458 kb on - strand at 767.460 kb on + strand at 767.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 766,367 - MPMX26_00726 0.32 +0.1 766,388 - MPMX26_00726 0.60 -0.4 766,389 - MPMX26_00726 0.61 +0.0 766,402 - MPMX26_00726 0.79 -1.2 766,402 - MPMX26_00726 0.79 -0.8 766,403 - MPMX26_00726 0.80 -0.1 766,403 - MPMX26_00726 0.80 +0.1 766,403 - MPMX26_00726 0.80 +0.3 766,446 - MPMX26_00727 0.11 -0.4 766,467 - MPMX26_00727 0.39 -1.4 767,450 + +0.6 767,458 - +0.2 767,460 + +0.6 767,468 - +0.7
Or see this region's nucleotide sequence