Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00559 and MPMX26_00560 are separated by 237 nucleotides MPMX26_00560 and MPMX26_00561 are separated by 11 nucleotides MPMX26_00561 and MPMX26_00562 are separated by 383 nucleotides
MPMX26_00559: MPMX26_00559 - Enterobactin exporter EntS, at 589,902 to 591,164
_00559
MPMX26_00560: MPMX26_00560 - 50S ribosomal protein L35, at 591,402 to 591,596
_00560
MPMX26_00561: MPMX26_00561 - 50S ribosomal protein L20, at 591,608 to 591,967
_00561
MPMX26_00562: MPMX26_00562 - hypothetical protein, at 592,351 to 593,388
_00562
Position (kb) 591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 590.708 kb on - strand, within MPMX26_00559 at 590.765 kb on - strand, within MPMX26_00559 at 590.839 kb on - strand, within MPMX26_00559 at 590.997 kb on - strand, within MPMX26_00559 at 591.127 kb on - strand at 591.943 kb on + strand at 591.943 kb on + strand at 591.962 kb on + strand at 592.003 kb on + strand at 592.435 kb on - strand at 592.474 kb on - strand, within MPMX26_00562 at 592.474 kb on - strand, within MPMX26_00562 at 592.490 kb on - strand, within MPMX26_00562 at 592.500 kb on - strand, within MPMX26_00562 at 592.500 kb on - strand, within MPMX26_00562 at 592.500 kb on - strand, within MPMX26_00562 at 592.528 kb on - strand, within MPMX26_00562 at 592.530 kb on - strand, within MPMX26_00562 at 592.543 kb on - strand, within MPMX26_00562 at 592.543 kb on - strand, within MPMX26_00562 at 592.543 kb on - strand, within MPMX26_00562 at 592.543 kb on - strand, within MPMX26_00562 at 592.543 kb on - strand, within MPMX26_00562 at 592.543 kb on - strand, within MPMX26_00562 at 592.578 kb on - strand, within MPMX26_00562 at 592.581 kb on - strand, within MPMX26_00562
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 590,708 - MPMX26_00559 0.64 -0.3 590,765 - MPMX26_00559 0.68 +0.2 590,839 - MPMX26_00559 0.74 -0.2 590,997 - MPMX26_00559 0.87 -0.4 591,127 - +0.4 591,943 + -0.0 591,943 + +0.0 591,962 + +1.4 592,003 + -0.4 592,435 - +0.1 592,474 - MPMX26_00562 0.12 +0.0 592,474 - MPMX26_00562 0.12 +0.1 592,490 - MPMX26_00562 0.13 -0.2 592,500 - MPMX26_00562 0.14 -2.0 592,500 - MPMX26_00562 0.14 +0.5 592,500 - MPMX26_00562 0.14 +0.1 592,528 - MPMX26_00562 0.17 +0.2 592,530 - MPMX26_00562 0.17 +0.3 592,543 - MPMX26_00562 0.18 +0.1 592,543 - MPMX26_00562 0.18 +0.6 592,543 - MPMX26_00562 0.18 -0.1 592,543 - MPMX26_00562 0.18 +0.0 592,543 - MPMX26_00562 0.18 -0.1 592,543 - MPMX26_00562 0.18 +0.1 592,578 - MPMX26_00562 0.22 -0.0 592,581 - MPMX26_00562 0.22 -0.5
Or see this region's nucleotide sequence