Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00447

Experiment: casaminos (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00445 and MPMX26_00446 are separated by 63 nucleotidesMPMX26_00446 and MPMX26_00447 are separated by 15 nucleotidesMPMX26_00447 and MPMX26_00448 are separated by 2 nucleotidesMPMX26_00448 and MPMX26_00449 are separated by 12 nucleotides MPMX26_00445: MPMX26_00445 - Branched-chain-amino-acid aminotransferase, at 478,885 to 479,811 _00445 MPMX26_00446: MPMX26_00446 - hypothetical protein, at 479,875 to 480,765 _00446 MPMX26_00447: MPMX26_00447 - Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase, at 480,781 to 481,590 _00447 MPMX26_00448: MPMX26_00448 - hypothetical protein, at 481,593 to 482,576 _00448 MPMX26_00449: MPMX26_00449 - hypothetical protein, at 482,589 to 483,632 _00449 Position (kb) 480 481 482Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 479.790 kb on + strandat 479.790 kb on + strandat 479.792 kb on + strandat 479.792 kb on + strandat 480.538 kb on + strand, within MPMX26_00446at 480.547 kb on + strand, within MPMX26_00446at 480.649 kb on + strand, within MPMX26_00446at 480.709 kb on + strandat 480.709 kb on + strandat 480.729 kb on + strandat 480.743 kb on + strandat 480.751 kb on + strandat 480.766 kb on + strandat 480.766 kb on + strandat 480.771 kb on + strandat 480.808 kb on + strandat 480.859 kb on + strandat 480.859 kb on + strandat 480.885 kb on + strand, within MPMX26_00447at 480.887 kb on + strand, within MPMX26_00447at 480.887 kb on + strand, within MPMX26_00447at 480.887 kb on + strand, within MPMX26_00447at 480.887 kb on + strand, within MPMX26_00447at 480.887 kb on + strand, within MPMX26_00447at 480.887 kb on + strand, within MPMX26_00447at 480.905 kb on + strand, within MPMX26_00447at 480.941 kb on + strand, within MPMX26_00447at 481.001 kb on + strand, within MPMX26_00447at 481.141 kb on + strand, within MPMX26_00447at 481.148 kb on + strand, within MPMX26_00447at 481.152 kb on + strand, within MPMX26_00447at 481.186 kb on + strand, within MPMX26_00447at 481.186 kb on + strand, within MPMX26_00447at 481.186 kb on + strand, within MPMX26_00447at 481.186 kb on + strand, within MPMX26_00447at 481.186 kb on + strand, within MPMX26_00447at 481.186 kb on + strand, within MPMX26_00447at 481.191 kb on + strand, within MPMX26_00447at 481.196 kb on + strand, within MPMX26_00447at 481.196 kb on + strand, within MPMX26_00447at 481.229 kb on + strand, within MPMX26_00447at 481.229 kb on + strand, within MPMX26_00447at 481.253 kb on + strand, within MPMX26_00447at 481.253 kb on + strand, within MPMX26_00447at 481.282 kb on + strand, within MPMX26_00447at 481.282 kb on + strand, within MPMX26_00447at 481.282 kb on + strand, within MPMX26_00447at 481.282 kb on + strand, within MPMX26_00447at 481.282 kb on + strand, within MPMX26_00447at 481.282 kb on + strand, within MPMX26_00447at 481.315 kb on + strand, within MPMX26_00447at 481.363 kb on + strand, within MPMX26_00447at 481.363 kb on + strand, within MPMX26_00447at 481.378 kb on + strand, within MPMX26_00447at 481.419 kb on + strand, within MPMX26_00447at 481.424 kb on + strand, within MPMX26_00447at 481.424 kb on + strand, within MPMX26_00447at 481.424 kb on + strand, within MPMX26_00447at 481.424 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.447 kb on + strand, within MPMX26_00447at 481.454 kb on + strand, within MPMX26_00447at 481.471 kb on + strand, within MPMX26_00447at 481.508 kb on + strand, within MPMX26_00447at 481.579 kb on + strandat 481.584 kb on + strandat 481.643 kb on + strandat 481.703 kb on + strand, within MPMX26_00448at 481.710 kb on + strand, within MPMX26_00448at 481.808 kb on + strand, within MPMX26_00448at 481.808 kb on + strand, within MPMX26_00448at 481.808 kb on + strand, within MPMX26_00448at 481.813 kb on + strand, within MPMX26_00448at 481.827 kb on + strand, within MPMX26_00448at 481.834 kb on + strand, within MPMX26_00448at 481.862 kb on + strand, within MPMX26_00448at 481.868 kb on + strand, within MPMX26_00448at 481.892 kb on + strand, within MPMX26_00448at 481.896 kb on + strand, within MPMX26_00448at 481.987 kb on + strand, within MPMX26_00448at 482.011 kb on + strand, within MPMX26_00448at 482.018 kb on + strand, within MPMX26_00448at 482.036 kb on + strand, within MPMX26_00448at 482.107 kb on + strand, within MPMX26_00448at 482.169 kb on + strand, within MPMX26_00448at 482.185 kb on + strand, within MPMX26_00448at 482.207 kb on + strand, within MPMX26_00448at 482.273 kb on + strand, within MPMX26_00448at 482.279 kb on + strand, within MPMX26_00448at 482.301 kb on + strand, within MPMX26_00448at 482.314 kb on + strand, within MPMX26_00448at 482.315 kb on + strand, within MPMX26_00448at 482.332 kb on + strand, within MPMX26_00448at 482.339 kb on + strand, within MPMX26_00448at 482.339 kb on + strand, within MPMX26_00448at 482.350 kb on + strand, within MPMX26_00448at 482.359 kb on + strand, within MPMX26_00448at 482.384 kb on + strand, within MPMX26_00448at 482.452 kb on + strand, within MPMX26_00448at 482.460 kb on + strand, within MPMX26_00448at 482.489 kb on + strandat 482.489 kb on + strandat 482.489 kb on + strandat 482.489 kb on + strandat 482.489 kb on + strandat 482.544 kb on + strandat 482.544 kb on + strandat 482.544 kb on + strandat 482.544 kb on + strandat 482.544 kb on + strandat 482.544 kb on + strandat 482.544 kb on + strandat 482.571 kb on + strandat 482.576 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
remove
479,790 + -0.1
479,790 + -0.3
479,792 + -0.2
479,792 + +0.6
480,538 + MPMX26_00446 0.74 -0.8
480,547 + MPMX26_00446 0.75 -0.7
480,649 + MPMX26_00446 0.87 -0.8
480,709 + -2.4
480,709 + -0.3
480,729 + -1.4
480,743 + -1.7
480,751 + -3.3
480,766 + +0.6
480,766 + +0.4
480,771 + +0.8
480,808 + +0.5
480,859 + +0.7
480,859 + +0.7
480,885 + MPMX26_00447 0.13 +0.7
480,887 + MPMX26_00447 0.13 +0.1
480,887 + MPMX26_00447 0.13 +0.6
480,887 + MPMX26_00447 0.13 +1.2
480,887 + MPMX26_00447 0.13 +0.5
480,887 + MPMX26_00447 0.13 +0.3
480,887 + MPMX26_00447 0.13 +0.6
480,905 + MPMX26_00447 0.15 +0.5
480,941 + MPMX26_00447 0.20 +0.5
481,001 + MPMX26_00447 0.27 +0.5
481,141 + MPMX26_00447 0.44 +0.6
481,148 + MPMX26_00447 0.45 +0.4
481,152 + MPMX26_00447 0.46 +0.5
481,186 + MPMX26_00447 0.50 +0.6
481,186 + MPMX26_00447 0.50 +0.5
481,186 + MPMX26_00447 0.50 +0.3
481,186 + MPMX26_00447 0.50 +0.6
481,186 + MPMX26_00447 0.50 +0.6
481,186 + MPMX26_00447 0.50 +1.2
481,191 + MPMX26_00447 0.51 +0.5
481,196 + MPMX26_00447 0.51 +0.3
481,196 + MPMX26_00447 0.51 +0.8
481,229 + MPMX26_00447 0.55 +0.4
481,229 + MPMX26_00447 0.55 -0.1
481,253 + MPMX26_00447 0.58 +0.3
481,253 + MPMX26_00447 0.58 +0.7
481,282 + MPMX26_00447 0.62 +0.6
481,282 + MPMX26_00447 0.62 +0.8
481,282 + MPMX26_00447 0.62 +0.9
481,282 + MPMX26_00447 0.62 +0.7
481,282 + MPMX26_00447 0.62 +0.5
481,282 + MPMX26_00447 0.62 +0.5
481,315 + MPMX26_00447 0.66 +0.5
481,363 + MPMX26_00447 0.72 +0.5
481,363 + MPMX26_00447 0.72 +0.2
481,378 + MPMX26_00447 0.74 +0.4
481,419 + MPMX26_00447 0.79 +0.7
481,424 + MPMX26_00447 0.79 +0.3
481,424 + MPMX26_00447 0.79 +0.4
481,424 + MPMX26_00447 0.79 +0.5
481,424 + MPMX26_00447 0.79 +0.5
481,447 + MPMX26_00447 0.82 +0.4
481,447 + MPMX26_00447 0.82 +0.5
481,447 + MPMX26_00447 0.82 +0.8
481,447 + MPMX26_00447 0.82 +0.7
481,447 + MPMX26_00447 0.82 +0.4
481,447 + MPMX26_00447 0.82 +0.5
481,447 + MPMX26_00447 0.82 +0.4
481,447 + MPMX26_00447 0.82 +0.4
481,447 + MPMX26_00447 0.82 +0.4
481,447 + MPMX26_00447 0.82 +0.6
481,447 + MPMX26_00447 0.82 +0.8
481,447 + MPMX26_00447 0.82 +0.5
481,447 + MPMX26_00447 0.82 +0.4
481,447 + MPMX26_00447 0.82 +0.1
481,447 + MPMX26_00447 0.82 +0.1
481,454 + MPMX26_00447 0.83 +0.4
481,471 + MPMX26_00447 0.85 +0.1
481,508 + MPMX26_00447 0.90 +0.4
481,579 + +0.4
481,584 + -0.3
481,643 + -2.7
481,703 + MPMX26_00448 0.11 -3.7
481,710 + MPMX26_00448 0.12 -4.1
481,808 + MPMX26_00448 0.22 -1.5
481,808 + MPMX26_00448 0.22 -2.7
481,808 + MPMX26_00448 0.22 -3.0
481,813 + MPMX26_00448 0.22 -3.4
481,827 + MPMX26_00448 0.24 -3.2
481,834 + MPMX26_00448 0.24 -3.2
481,862 + MPMX26_00448 0.27 -3.9
481,868 + MPMX26_00448 0.28 -2.0
481,892 + MPMX26_00448 0.30 -3.4
481,896 + MPMX26_00448 0.31 -3.3
481,987 + MPMX26_00448 0.40 -3.6
482,011 + MPMX26_00448 0.42 -2.6
482,018 + MPMX26_00448 0.43 -0.2
482,036 + MPMX26_00448 0.45 -3.2
482,107 + MPMX26_00448 0.52 -1.1
482,169 + MPMX26_00448 0.59 -3.2
482,185 + MPMX26_00448 0.60 -3.3
482,207 + MPMX26_00448 0.62 -3.4
482,273 + MPMX26_00448 0.69 -0.6
482,279 + MPMX26_00448 0.70 -2.5
482,301 + MPMX26_00448 0.72 -4.1
482,314 + MPMX26_00448 0.73 -1.8
482,315 + MPMX26_00448 0.73 -2.3
482,332 + MPMX26_00448 0.75 -3.9
482,339 + MPMX26_00448 0.76 -3.0
482,339 + MPMX26_00448 0.76 -3.6
482,350 + MPMX26_00448 0.77 -2.1
482,359 + MPMX26_00448 0.78 -3.2
482,384 + MPMX26_00448 0.80 -3.9
482,452 + MPMX26_00448 0.87 -5.0
482,460 + MPMX26_00448 0.88 -3.0
482,489 + -3.1
482,489 + -4.1
482,489 + -2.9
482,489 + -3.5
482,489 + -1.3
482,544 + -0.3
482,544 + -0.5
482,544 + -0.8
482,544 + -0.4
482,544 + -0.4
482,544 + -0.7
482,544 + -0.4
482,571 + -0.0
482,576 + +1.1

Or see this region's nucleotide sequence