Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS01025

Experiment: supernatant control, M9 with 0.1X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS01015 and COO64_RS26980 are separated by 18 nucleotidesCOO64_RS26980 and COO64_RS01020 are separated by 178 nucleotidesCOO64_RS01020 and COO64_RS01025 are separated by 93 nucleotidesCOO64_RS01025 and rbbA overlap by 4 nucleotides COO64_RS01015: COO64_RS01015 - 5-formyltetrahydrofolate cyclo-ligase, at 216,243 to 216,851 _RS01015 COO64_RS26980: COO64_RS26980 - hypothetical protein, at 216,870 to 217,010 _RS26980 COO64_RS01020: COO64_RS01020 - EVE domain-containing protein, at 217,189 to 217,638 _RS01020 COO64_RS01025: COO64_RS01025 - HlyD family secretion protein, at 217,732 to 218,697 _RS01025 COO64_RS01030: rbbA - ribosome-associated ATPase/putative transporter RbbA, at 218,694 to 221,417 rbbA Position (kb) 217 218 219Strain fitness (log2 ratio) -2 -1 0 1 2at 216.894 kb on + strand, within COO64_RS26980at 216.901 kb on + strand, within COO64_RS26980at 216.940 kb on + strand, within COO64_RS26980at 216.947 kb on + strand, within COO64_RS26980at 216.948 kb on - strand, within COO64_RS26980at 217.080 kb on + strandat 217.080 kb on + strandat 217.081 kb on - strandat 217.160 kb on + strandat 217.160 kb on + strandat 217.161 kb on - strandat 217.161 kb on - strandat 217.195 kb on + strandat 217.195 kb on + strandat 217.196 kb on - strandat 217.196 kb on - strandat 217.282 kb on + strand, within COO64_RS01020at 217.282 kb on + strand, within COO64_RS01020at 217.293 kb on + strand, within COO64_RS01020at 217.336 kb on + strand, within COO64_RS01020at 217.336 kb on + strand, within COO64_RS01020at 217.337 kb on - strand, within COO64_RS01020at 217.397 kb on - strand, within COO64_RS01020at 217.432 kb on + strand, within COO64_RS01020at 217.432 kb on + strand, within COO64_RS01020at 217.432 kb on + strand, within COO64_RS01020at 217.432 kb on + strand, within COO64_RS01020at 217.432 kb on + strand, within COO64_RS01020at 217.433 kb on - strand, within COO64_RS01020at 217.433 kb on - strand, within COO64_RS01020at 217.525 kb on + strand, within COO64_RS01020at 217.526 kb on - strand, within COO64_RS01020at 217.526 kb on - strand, within COO64_RS01020at 217.565 kb on + strand, within COO64_RS01020at 217.645 kb on + strandat 217.645 kb on + strandat 217.645 kb on + strandat 217.711 kb on - strandat 217.811 kb on - strandat 218.041 kb on + strand, within COO64_RS01025at 218.137 kb on + strand, within COO64_RS01025at 218.137 kb on + strand, within COO64_RS01025at 218.137 kb on + strand, within COO64_RS01025at 218.176 kb on + strand, within COO64_RS01025at 218.327 kb on + strand, within COO64_RS01025at 218.327 kb on + strand, within COO64_RS01025at 218.328 kb on - strand, within COO64_RS01025at 218.328 kb on - strand, within COO64_RS01025at 218.328 kb on - strand, within COO64_RS01025at 218.328 kb on - strand, within COO64_RS01025at 218.328 kb on - strand, within COO64_RS01025at 218.328 kb on - strand, within COO64_RS01025at 218.372 kb on + strand, within COO64_RS01025at 218.373 kb on - strand, within COO64_RS01025at 218.373 kb on - strand, within COO64_RS01025at 218.401 kb on + strand, within COO64_RS01025at 218.401 kb on + strand, within COO64_RS01025at 218.401 kb on + strand, within COO64_RS01025at 218.401 kb on + strand, within COO64_RS01025at 218.401 kb on + strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.402 kb on - strand, within COO64_RS01025at 218.413 kb on + strand, within COO64_RS01025at 218.413 kb on + strand, within COO64_RS01025at 218.413 kb on + strand, within COO64_RS01025at 218.414 kb on - strand, within COO64_RS01025at 218.414 kb on - strand, within COO64_RS01025at 218.653 kb on + strandat 218.668 kb on - strandat 218.668 kb on - strandat 218.736 kb on + strandat 218.918 kb on + strandat 218.929 kb on - strandat 218.974 kb on - strand, within rbbAat 219.294 kb on + strand, within rbbAat 219.294 kb on + strand, within rbbAat 219.294 kb on + strand, within rbbAat 219.295 kb on - strand, within rbbAat 219.295 kb on - strand, within rbbAat 219.295 kb on - strand, within rbbAat 219.295 kb on - strand, within rbbAat 219.476 kb on + strand, within rbbAat 219.673 kb on + strand, within rbbA

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.1X LB
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216,894 + COO64_RS26980 0.17 +0.9
216,901 + COO64_RS26980 0.22 -0.0
216,940 + COO64_RS26980 0.50 +0.2
216,947 + COO64_RS26980 0.55 -1.1
216,948 - COO64_RS26980 0.55 +0.8
217,080 + -0.2
217,080 + +0.9
217,081 - +0.1
217,160 + -0.4
217,160 + +0.1
217,161 - +0.4
217,161 - -1.1
217,195 + +0.4
217,195 + -1.1
217,196 - +0.3
217,196 - +0.8
217,282 + COO64_RS01020 0.21 +0.3
217,282 + COO64_RS01020 0.21 -0.1
217,293 + COO64_RS01020 0.23 +1.2
217,336 + COO64_RS01020 0.33 +0.5
217,336 + COO64_RS01020 0.33 +0.0
217,337 - COO64_RS01020 0.33 +0.7
217,397 - COO64_RS01020 0.46 -0.2
217,432 + COO64_RS01020 0.54 -2.2
217,432 + COO64_RS01020 0.54 -0.7
217,432 + COO64_RS01020 0.54 +0.6
217,432 + COO64_RS01020 0.54 +0.6
217,432 + COO64_RS01020 0.54 -0.5
217,433 - COO64_RS01020 0.54 -2.0
217,433 - COO64_RS01020 0.54 +0.2
217,525 + COO64_RS01020 0.75 -0.8
217,526 - COO64_RS01020 0.75 +0.6
217,526 - COO64_RS01020 0.75 -0.9
217,565 + COO64_RS01020 0.84 +0.4
217,645 + -0.7
217,645 + -0.7
217,645 + +0.1
217,711 - -0.3
217,811 - +1.1
218,041 + COO64_RS01025 0.32 -1.5
218,137 + COO64_RS01025 0.42 +0.9
218,137 + COO64_RS01025 0.42 +0.1
218,137 + COO64_RS01025 0.42 +0.1
218,176 + COO64_RS01025 0.46 +0.9
218,327 + COO64_RS01025 0.62 +0.1
218,327 + COO64_RS01025 0.62 +0.5
218,328 - COO64_RS01025 0.62 +0.2
218,328 - COO64_RS01025 0.62 -1.0
218,328 - COO64_RS01025 0.62 -0.2
218,328 - COO64_RS01025 0.62 -2.2
218,328 - COO64_RS01025 0.62 +0.5
218,328 - COO64_RS01025 0.62 +0.2
218,372 + COO64_RS01025 0.66 -0.8
218,373 - COO64_RS01025 0.66 +1.3
218,373 - COO64_RS01025 0.66 +0.7
218,401 + COO64_RS01025 0.69 -1.0
218,401 + COO64_RS01025 0.69 -1.0
218,401 + COO64_RS01025 0.69 +0.2
218,401 + COO64_RS01025 0.69 +0.1
218,401 + COO64_RS01025 0.69 +1.0
218,402 - COO64_RS01025 0.69 +0.1
218,402 - COO64_RS01025 0.69 -0.5
218,402 - COO64_RS01025 0.69 +1.0
218,402 - COO64_RS01025 0.69 +0.0
218,402 - COO64_RS01025 0.69 -2.3
218,402 - COO64_RS01025 0.69 +1.2
218,402 - COO64_RS01025 0.69 -1.4
218,413 + COO64_RS01025 0.70 +0.5
218,413 + COO64_RS01025 0.70 +0.0
218,413 + COO64_RS01025 0.70 -1.1
218,414 - COO64_RS01025 0.71 +0.6
218,414 - COO64_RS01025 0.71 +0.9
218,653 + -1.0
218,668 - -0.1
218,668 - -0.2
218,736 + +0.1
218,918 + -0.7
218,929 - +1.8
218,974 - rbbA COO64_RS01030 0.10 +2.4
219,294 + rbbA COO64_RS01030 0.22 -0.1
219,294 + rbbA COO64_RS01030 0.22 +0.9
219,294 + rbbA COO64_RS01030 0.22 -0.7
219,295 - rbbA COO64_RS01030 0.22 +0.3
219,295 - rbbA COO64_RS01030 0.22 +0.2
219,295 - rbbA COO64_RS01030 0.22 -1.1
219,295 - rbbA COO64_RS01030 0.22 +0.3
219,476 + rbbA COO64_RS01030 0.29 -0.2
219,673 + rbbA COO64_RS01030 0.36 +0.5

Or see this region's nucleotide sequence