Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05120

Experiment: Glucomannan (konjac) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05119 and BACOVA_05120 are separated by 23 nucleotidesBACOVA_05120 and BACOVA_05121 are separated by 81 nucleotidesBACOVA_05121 and BACOVA_05122 are separated by 75 nucleotides BACOVA_05119: BACOVA_05119 - hypothetical protein, at 591,578 to 593,071 _05119 BACOVA_05120: BACOVA_05120 - peptidase M16 inactive domain protein, at 593,095 to 595,932 _05120 BACOVA_05121: BACOVA_05121 - 3-deoxy-8-phosphooctulonate synthase, at 596,014 to 596,814 _05121 BACOVA_05122: BACOVA_05122 - lipid kinase, YegS/Rv2252/BmrU family, at 596,890 to 597,816 _05122 Position (kb) 593 594 595 596Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 592.117 kb on - strand, within BACOVA_05119at 592.117 kb on - strand, within BACOVA_05119at 592.187 kb on + strand, within BACOVA_05119at 592.194 kb on - strand, within BACOVA_05119at 592.239 kb on - strand, within BACOVA_05119at 592.264 kb on + strand, within BACOVA_05119at 592.300 kb on + strand, within BACOVA_05119at 592.318 kb on + strand, within BACOVA_05119at 592.319 kb on - strand, within BACOVA_05119at 592.328 kb on - strand, within BACOVA_05119at 592.353 kb on + strand, within BACOVA_05119at 592.358 kb on - strand, within BACOVA_05119at 592.442 kb on + strand, within BACOVA_05119at 592.442 kb on + strand, within BACOVA_05119at 592.444 kb on + strand, within BACOVA_05119at 592.445 kb on - strand, within BACOVA_05119at 592.473 kb on + strand, within BACOVA_05119at 592.474 kb on - strand, within BACOVA_05119at 592.487 kb on - strand, within BACOVA_05119at 592.535 kb on - strand, within BACOVA_05119at 592.535 kb on - strand, within BACOVA_05119at 592.541 kb on + strand, within BACOVA_05119at 592.542 kb on - strand, within BACOVA_05119at 592.542 kb on - strand, within BACOVA_05119at 592.542 kb on - strand, within BACOVA_05119at 592.587 kb on + strand, within BACOVA_05119at 592.593 kb on + strand, within BACOVA_05119at 592.606 kb on + strand, within BACOVA_05119at 592.621 kb on + strand, within BACOVA_05119at 592.622 kb on - strand, within BACOVA_05119at 592.627 kb on + strand, within BACOVA_05119at 592.632 kb on + strand, within BACOVA_05119at 592.667 kb on - strand, within BACOVA_05119at 592.670 kb on - strand, within BACOVA_05119at 592.739 kb on + strand, within BACOVA_05119at 592.743 kb on - strand, within BACOVA_05119at 592.885 kb on - strand, within BACOVA_05119at 592.885 kb on - strand, within BACOVA_05119at 592.885 kb on - strand, within BACOVA_05119at 592.907 kb on - strand, within BACOVA_05119at 592.990 kb on + strandat 593.010 kb on + strandat 593.064 kb on - strandat 593.082 kb on + strandat 593.082 kb on + strandat 593.221 kb on - strandat 593.256 kb on + strandat 593.257 kb on - strandat 593.257 kb on - strandat 593.294 kb on + strandat 593.295 kb on - strandat 593.295 kb on - strandat 593.308 kb on - strandat 593.310 kb on - strandat 593.422 kb on + strand, within BACOVA_05120at 593.479 kb on + strand, within BACOVA_05120at 593.480 kb on - strand, within BACOVA_05120at 593.487 kb on - strand, within BACOVA_05120at 593.491 kb on - strand, within BACOVA_05120at 593.545 kb on + strand, within BACOVA_05120at 593.545 kb on + strand, within BACOVA_05120at 593.598 kb on - strand, within BACOVA_05120at 593.683 kb on - strand, within BACOVA_05120at 593.710 kb on - strand, within BACOVA_05120at 593.729 kb on + strand, within BACOVA_05120at 593.730 kb on - strand, within BACOVA_05120at 593.841 kb on - strand, within BACOVA_05120at 593.854 kb on + strand, within BACOVA_05120at 593.855 kb on - strand, within BACOVA_05120at 593.899 kb on + strand, within BACOVA_05120at 593.902 kb on + strand, within BACOVA_05120at 593.902 kb on + strand, within BACOVA_05120at 593.903 kb on - strand, within BACOVA_05120at 593.903 kb on - strand, within BACOVA_05120at 593.913 kb on + strand, within BACOVA_05120at 593.982 kb on - strand, within BACOVA_05120at 594.029 kb on + strand, within BACOVA_05120at 594.030 kb on + strand, within BACOVA_05120at 594.030 kb on - strand, within BACOVA_05120at 594.034 kb on - strand, within BACOVA_05120at 594.208 kb on - strand, within BACOVA_05120at 594.208 kb on - strand, within BACOVA_05120at 594.208 kb on - strand, within BACOVA_05120at 594.253 kb on + strand, within BACOVA_05120at 594.254 kb on - strand, within BACOVA_05120at 594.304 kb on + strand, within BACOVA_05120at 594.325 kb on + strand, within BACOVA_05120at 594.339 kb on + strand, within BACOVA_05120at 594.339 kb on + strand, within BACOVA_05120at 594.340 kb on - strand, within BACOVA_05120at 594.345 kb on - strand, within BACOVA_05120at 594.384 kb on + strand, within BACOVA_05120at 594.387 kb on + strand, within BACOVA_05120at 594.412 kb on - strand, within BACOVA_05120at 594.428 kb on + strand, within BACOVA_05120at 594.429 kb on - strand, within BACOVA_05120at 594.483 kb on + strand, within BACOVA_05120at 594.484 kb on - strand, within BACOVA_05120at 594.491 kb on + strand, within BACOVA_05120at 594.580 kb on + strand, within BACOVA_05120at 594.580 kb on + strand, within BACOVA_05120at 594.581 kb on - strand, within BACOVA_05120at 594.615 kb on + strand, within BACOVA_05120at 594.668 kb on + strand, within BACOVA_05120at 594.669 kb on - strand, within BACOVA_05120at 594.680 kb on + strand, within BACOVA_05120at 594.714 kb on - strand, within BACOVA_05120at 594.874 kb on - strand, within BACOVA_05120at 594.969 kb on + strand, within BACOVA_05120at 594.970 kb on - strand, within BACOVA_05120at 594.990 kb on + strand, within BACOVA_05120at 594.992 kb on + strand, within BACOVA_05120at 594.999 kb on + strand, within BACOVA_05120at 595.000 kb on - strand, within BACOVA_05120at 595.004 kb on + strand, within BACOVA_05120at 595.004 kb on + strand, within BACOVA_05120at 595.004 kb on + strand, within BACOVA_05120at 595.005 kb on - strand, within BACOVA_05120at 595.005 kb on - strand, within BACOVA_05120at 595.007 kb on + strand, within BACOVA_05120at 595.007 kb on + strand, within BACOVA_05120at 595.008 kb on - strand, within BACOVA_05120at 595.068 kb on - strand, within BACOVA_05120at 595.098 kb on + strand, within BACOVA_05120at 595.100 kb on + strand, within BACOVA_05120at 595.100 kb on + strand, within BACOVA_05120at 595.101 kb on - strand, within BACOVA_05120at 595.136 kb on + strand, within BACOVA_05120at 595.137 kb on - strand, within BACOVA_05120at 595.140 kb on + strand, within BACOVA_05120at 595.141 kb on - strand, within BACOVA_05120at 595.168 kb on + strand, within BACOVA_05120at 595.169 kb on - strand, within BACOVA_05120at 595.169 kb on - strand, within BACOVA_05120at 595.181 kb on - strand, within BACOVA_05120at 595.218 kb on + strand, within BACOVA_05120at 595.219 kb on - strand, within BACOVA_05120at 595.226 kb on - strand, within BACOVA_05120at 595.315 kb on - strand, within BACOVA_05120at 595.329 kb on + strand, within BACOVA_05120at 595.329 kb on + strand, within BACOVA_05120at 595.330 kb on - strand, within BACOVA_05120at 595.330 kb on - strand, within BACOVA_05120at 595.340 kb on + strand, within BACOVA_05120at 595.340 kb on + strand, within BACOVA_05120at 595.345 kb on - strand, within BACOVA_05120at 595.362 kb on + strand, within BACOVA_05120at 595.362 kb on + strand, within BACOVA_05120at 595.362 kb on + strand, within BACOVA_05120at 595.363 kb on - strand, within BACOVA_05120at 595.467 kb on + strand, within BACOVA_05120at 595.468 kb on - strand, within BACOVA_05120at 595.532 kb on - strand, within BACOVA_05120at 595.532 kb on - strand, within BACOVA_05120at 595.543 kb on - strand, within BACOVA_05120at 595.547 kb on + strand, within BACOVA_05120at 595.547 kb on + strand, within BACOVA_05120at 595.569 kb on + strand, within BACOVA_05120at 595.569 kb on + strand, within BACOVA_05120at 595.569 kb on + strand, within BACOVA_05120at 595.569 kb on + strand, within BACOVA_05120at 595.572 kb on - strand, within BACOVA_05120at 595.732 kb on + strandat 595.749 kb on - strandat 595.790 kb on + strandat 595.790 kb on + strandat 595.790 kb on + strandat 595.791 kb on - strandat 595.793 kb on + strandat 595.793 kb on + strandat 595.797 kb on + strandat 595.811 kb on - strandat 595.888 kb on + strandat 595.888 kb on + strandat 595.891 kb on - strandat 595.909 kb on + strandat 595.921 kb on + strandat 595.922 kb on - strandat 595.941 kb on + strandat 595.954 kb on + strandat 595.965 kb on + strandat 595.965 kb on + strandat 595.998 kb on + strandat 595.998 kb on + strandat 595.999 kb on - strandat 596.016 kb on - strandat 596.020 kb on + strandat 596.832 kb on - strandat 596.905 kb on - strandat 596.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C)
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592,117 - BACOVA_05119 0.36 -4.3
592,117 - BACOVA_05119 0.36 -3.0
592,187 + BACOVA_05119 0.41 -1.4
592,194 - BACOVA_05119 0.41 -0.4
592,239 - BACOVA_05119 0.44 -3.3
592,264 + BACOVA_05119 0.46 -0.9
592,300 + BACOVA_05119 0.48 -1.6
592,318 + BACOVA_05119 0.50 -3.3
592,319 - BACOVA_05119 0.50 -3.5
592,328 - BACOVA_05119 0.50 -1.4
592,353 + BACOVA_05119 0.52 -2.7
592,358 - BACOVA_05119 0.52 -2.1
592,442 + BACOVA_05119 0.58 -3.0
592,442 + BACOVA_05119 0.58 -1.4
592,444 + BACOVA_05119 0.58 -1.1
592,445 - BACOVA_05119 0.58 -1.2
592,473 + BACOVA_05119 0.60 -1.1
592,474 - BACOVA_05119 0.60 -2.1
592,487 - BACOVA_05119 0.61 -3.5
592,535 - BACOVA_05119 0.64 -0.4
592,535 - BACOVA_05119 0.64 -0.9
592,541 + BACOVA_05119 0.64 -2.7
592,542 - BACOVA_05119 0.65 -2.3
592,542 - BACOVA_05119 0.65 -4.0
592,542 - BACOVA_05119 0.65 -2.1
592,587 + BACOVA_05119 0.68 -2.2
592,593 + BACOVA_05119 0.68 +0.4
592,606 + BACOVA_05119 0.69 -2.4
592,621 + BACOVA_05119 0.70 -1.5
592,622 - BACOVA_05119 0.70 -3.1
592,627 + BACOVA_05119 0.70 -1.7
592,632 + BACOVA_05119 0.71 -0.9
592,667 - BACOVA_05119 0.73 -2.8
592,670 - BACOVA_05119 0.73 -2.6
592,739 + BACOVA_05119 0.78 -3.8
592,743 - BACOVA_05119 0.78 +0.2
592,885 - BACOVA_05119 0.87 -1.6
592,885 - BACOVA_05119 0.87 -2.0
592,885 - BACOVA_05119 0.87 -3.0
592,907 - BACOVA_05119 0.89 -3.5
592,990 + -0.6
593,010 + -1.6
593,064 - -2.1
593,082 + -3.8
593,082 + -2.8
593,221 - -1.1
593,256 + -4.1
593,257 - -0.9
593,257 - -1.4
593,294 + -0.6
593,295 - +0.9
593,295 - -0.3
593,308 - -1.8
593,310 - +0.1
593,422 + BACOVA_05120 0.12 -1.9
593,479 + BACOVA_05120 0.14 -1.6
593,480 - BACOVA_05120 0.14 -0.4
593,487 - BACOVA_05120 0.14 +0.9
593,491 - BACOVA_05120 0.14 -0.3
593,545 + BACOVA_05120 0.16 -0.9
593,545 + BACOVA_05120 0.16 -1.5
593,598 - BACOVA_05120 0.18 -0.7
593,683 - BACOVA_05120 0.21 -0.4
593,710 - BACOVA_05120 0.22 +1.3
593,729 + BACOVA_05120 0.22 -0.6
593,730 - BACOVA_05120 0.22 +0.1
593,841 - BACOVA_05120 0.26 +1.2
593,854 + BACOVA_05120 0.27 -2.7
593,855 - BACOVA_05120 0.27 +0.6
593,899 + BACOVA_05120 0.28 -0.1
593,902 + BACOVA_05120 0.28 -2.2
593,902 + BACOVA_05120 0.28 -2.1
593,903 - BACOVA_05120 0.28 +0.7
593,903 - BACOVA_05120 0.28 +0.5
593,913 + BACOVA_05120 0.29 -3.1
593,982 - BACOVA_05120 0.31 +0.0
594,029 + BACOVA_05120 0.33 -1.8
594,030 + BACOVA_05120 0.33 -1.9
594,030 - BACOVA_05120 0.33 -1.2
594,034 - BACOVA_05120 0.33 +0.4
594,208 - BACOVA_05120 0.39 -1.4
594,208 - BACOVA_05120 0.39 +1.4
594,208 - BACOVA_05120 0.39 -0.5
594,253 + BACOVA_05120 0.41 -2.7
594,254 - BACOVA_05120 0.41 +0.3
594,304 + BACOVA_05120 0.43 -1.6
594,325 + BACOVA_05120 0.43 -2.7
594,339 + BACOVA_05120 0.44 -2.8
594,339 + BACOVA_05120 0.44 -2.9
594,340 - BACOVA_05120 0.44 -0.6
594,345 - BACOVA_05120 0.44 -0.9
594,384 + BACOVA_05120 0.45 -5.6
594,387 + BACOVA_05120 0.46 -2.6
594,412 - BACOVA_05120 0.46 +0.0
594,428 + BACOVA_05120 0.47 -2.5
594,429 - BACOVA_05120 0.47 -0.2
594,483 + BACOVA_05120 0.49 -2.2
594,484 - BACOVA_05120 0.49 -1.3
594,491 + BACOVA_05120 0.49 -3.4
594,580 + BACOVA_05120 0.52 -0.1
594,580 + BACOVA_05120 0.52 -2.3
594,581 - BACOVA_05120 0.52 -0.1
594,615 + BACOVA_05120 0.54 -3.4
594,668 + BACOVA_05120 0.55 -3.5
594,669 - BACOVA_05120 0.55 -1.3
594,680 + BACOVA_05120 0.56 -1.8
594,714 - BACOVA_05120 0.57 +0.2
594,874 - BACOVA_05120 0.63 -1.2
594,969 + BACOVA_05120 0.66 -1.1
594,970 - BACOVA_05120 0.66 +0.5
594,990 + BACOVA_05120 0.67 -4.4
594,992 + BACOVA_05120 0.67 -3.0
594,999 + BACOVA_05120 0.67 -0.4
595,000 - BACOVA_05120 0.67 -1.9
595,004 + BACOVA_05120 0.67 -3.5
595,004 + BACOVA_05120 0.67 -2.8
595,004 + BACOVA_05120 0.67 -1.6
595,005 - BACOVA_05120 0.67 -0.1
595,005 - BACOVA_05120 0.67 -0.1
595,007 + BACOVA_05120 0.67 -1.4
595,007 + BACOVA_05120 0.67 -2.5
595,008 - BACOVA_05120 0.67 -0.0
595,068 - BACOVA_05120 0.70 +0.2
595,098 + BACOVA_05120 0.71 -3.5
595,100 + BACOVA_05120 0.71 -1.1
595,100 + BACOVA_05120 0.71 -3.7
595,101 - BACOVA_05120 0.71 +1.9
595,136 + BACOVA_05120 0.72 -2.4
595,137 - BACOVA_05120 0.72 -1.0
595,140 + BACOVA_05120 0.72 -1.4
595,141 - BACOVA_05120 0.72 +0.3
595,168 + BACOVA_05120 0.73 -2.4
595,169 - BACOVA_05120 0.73 -0.3
595,169 - BACOVA_05120 0.73 -0.1
595,181 - BACOVA_05120 0.74 +0.1
595,218 + BACOVA_05120 0.75 -1.1
595,219 - BACOVA_05120 0.75 +0.4
595,226 - BACOVA_05120 0.75 +0.6
595,315 - BACOVA_05120 0.78 -2.6
595,329 + BACOVA_05120 0.79 -3.9
595,329 + BACOVA_05120 0.79 -2.4
595,330 - BACOVA_05120 0.79 +0.7
595,330 - BACOVA_05120 0.79 +0.1
595,340 + BACOVA_05120 0.79 -2.3
595,340 + BACOVA_05120 0.79 -1.5
595,345 - BACOVA_05120 0.79 -2.2
595,362 + BACOVA_05120 0.80 -4.2
595,362 + BACOVA_05120 0.80 -0.9
595,362 + BACOVA_05120 0.80 -1.1
595,363 - BACOVA_05120 0.80 +0.8
595,467 + BACOVA_05120 0.84 -2.6
595,468 - BACOVA_05120 0.84 -0.5
595,532 - BACOVA_05120 0.86 +1.4
595,532 - BACOVA_05120 0.86 +0.1
595,543 - BACOVA_05120 0.86 +0.2
595,547 + BACOVA_05120 0.86 -2.4
595,547 + BACOVA_05120 0.86 -3.3
595,569 + BACOVA_05120 0.87 -2.0
595,569 + BACOVA_05120 0.87 -1.1
595,569 + BACOVA_05120 0.87 -1.4
595,569 + BACOVA_05120 0.87 -3.0
595,572 - BACOVA_05120 0.87 -0.5
595,732 + -2.5
595,749 - +0.2
595,790 + -4.9
595,790 + -3.1
595,790 + -3.8
595,791 - +0.6
595,793 + -1.9
595,793 + -1.5
595,797 + -3.4
595,811 - -0.1
595,888 + -2.9
595,888 + -1.7
595,891 - -1.7
595,909 + -4.4
595,921 + -0.5
595,922 - -0.4
595,941 + -2.5
595,954 + -3.4
595,965 + -0.4
595,965 + -1.8
595,998 + +0.2
595,998 + -0.2
595,999 - +0.4
596,016 - +0.8
596,020 + -1.3
596,832 - -0.9
596,905 - +0.3
596,905 - -0.5

Or see this region's nucleotide sequence