Experiment: Glucomannan (konjac) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04965 and BACOVA_04966 are separated by 80 nucleotides BACOVA_04966 and BACOVA_04967 are separated by 181 nucleotides
BACOVA_04965: BACOVA_04965 - SusD family protein, at 406,991 to 408,712
_04965
BACOVA_04966: BACOVA_04966 - FG-GAP repeat protein, at 408,793 to 410,877
_04966
BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457
_04967
Position (kb) 408
409
410
411 Strain fitness (log2 ratio) -2
-1
0
1
2 at 407.831 kb on + strand, within BACOVA_04965 at 407.858 kb on + strand, within BACOVA_04965 at 407.903 kb on - strand, within BACOVA_04965 at 407.905 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 408.038 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.062 kb on + strand, within BACOVA_04965 at 408.064 kb on + strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.153 kb on - strand, within BACOVA_04965 at 408.219 kb on - strand, within BACOVA_04965 at 408.240 kb on + strand, within BACOVA_04965 at 408.241 kb on - strand, within BACOVA_04965 at 408.302 kb on + strand, within BACOVA_04965 at 408.326 kb on + strand, within BACOVA_04965 at 408.327 kb on - strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.329 kb on - strand, within BACOVA_04965 at 408.397 kb on - strand, within BACOVA_04965 at 408.478 kb on + strand, within BACOVA_04965 at 408.483 kb on + strand, within BACOVA_04965 at 408.520 kb on - strand, within BACOVA_04965 at 408.575 kb on - strand at 408.592 kb on + strand at 408.592 kb on + strand at 408.596 kb on + strand at 408.596 kb on + strand at 408.597 kb on - strand at 408.597 kb on - strand at 408.599 kb on - strand at 408.599 kb on - strand at 408.603 kb on - strand at 408.603 kb on - strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.638 kb on - strand at 408.638 kb on - strand at 408.644 kb on + strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.743 kb on - strand at 408.747 kb on + strand at 408.747 kb on + strand at 408.805 kb on + strand at 408.806 kb on - strand at 408.807 kb on + strand at 408.807 kb on + strand at 408.809 kb on + strand at 408.809 kb on + strand at 408.810 kb on - strand at 408.839 kb on + strand at 408.954 kb on + strand at 408.958 kb on + strand at 409.028 kb on + strand, within BACOVA_04966 at 409.047 kb on + strand, within BACOVA_04966 at 409.066 kb on + strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.069 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.154 kb on + strand, within BACOVA_04966 at 409.169 kb on + strand, within BACOVA_04966 at 409.170 kb on - strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.221 kb on + strand, within BACOVA_04966 at 409.247 kb on - strand, within BACOVA_04966 at 409.257 kb on + strand, within BACOVA_04966 at 409.258 kb on - strand, within BACOVA_04966 at 409.262 kb on + strand, within BACOVA_04966 at 409.291 kb on - strand, within BACOVA_04966 at 409.295 kb on - strand, within BACOVA_04966 at 409.309 kb on - strand, within BACOVA_04966 at 409.370 kb on - strand, within BACOVA_04966 at 409.470 kb on + strand, within BACOVA_04966 at 409.490 kb on - strand, within BACOVA_04966 at 409.491 kb on + strand, within BACOVA_04966 at 409.500 kb on + strand, within BACOVA_04966 at 409.501 kb on - strand, within BACOVA_04966 at 409.506 kb on - strand, within BACOVA_04966 at 409.530 kb on - strand, within BACOVA_04966 at 409.538 kb on + strand, within BACOVA_04966 at 409.578 kb on + strand, within BACOVA_04966 at 409.588 kb on - strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.668 kb on + strand, within BACOVA_04966 at 409.702 kb on + strand, within BACOVA_04966 at 409.703 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.723 kb on + strand, within BACOVA_04966 at 409.755 kb on + strand, within BACOVA_04966 at 409.798 kb on + strand, within BACOVA_04966 at 409.810 kb on + strand, within BACOVA_04966 at 409.876 kb on - strand, within BACOVA_04966 at 409.876 kb on - strand, within BACOVA_04966 at 409.929 kb on + strand, within BACOVA_04966 at 409.935 kb on + strand, within BACOVA_04966 at 409.935 kb on + strand, within BACOVA_04966 at 409.944 kb on + strand, within BACOVA_04966 at 409.945 kb on - strand, within BACOVA_04966 at 409.980 kb on + strand, within BACOVA_04966 at 410.007 kb on + strand, within BACOVA_04966 at 410.098 kb on + strand, within BACOVA_04966 at 410.099 kb on - strand, within BACOVA_04966 at 410.099 kb on - strand, within BACOVA_04966 at 410.114 kb on + strand, within BACOVA_04966 at 410.169 kb on - strand, within BACOVA_04966 at 410.240 kb on - strand, within BACOVA_04966 at 410.343 kb on + strand, within BACOVA_04966 at 410.355 kb on + strand, within BACOVA_04966 at 410.355 kb on + strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.419 kb on - strand, within BACOVA_04966 at 410.442 kb on + strand, within BACOVA_04966 at 410.446 kb on + strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.452 kb on - strand, within BACOVA_04966 at 410.458 kb on - strand, within BACOVA_04966 at 410.476 kb on + strand, within BACOVA_04966 at 410.483 kb on + strand, within BACOVA_04966 at 410.491 kb on + strand, within BACOVA_04966 at 410.545 kb on + strand, within BACOVA_04966 at 410.546 kb on - strand, within BACOVA_04966 at 410.578 kb on - strand, within BACOVA_04966 at 410.622 kb on + strand, within BACOVA_04966 at 410.628 kb on + strand, within BACOVA_04966 at 410.629 kb on - strand, within BACOVA_04966 at 410.629 kb on - strand, within BACOVA_04966 at 410.638 kb on + strand, within BACOVA_04966 at 410.638 kb on + strand, within BACOVA_04966 at 410.651 kb on - strand, within BACOVA_04966 at 410.654 kb on - strand, within BACOVA_04966 at 410.687 kb on + strand at 410.687 kb on + strand at 410.687 kb on + strand at 410.688 kb on - strand at 410.691 kb on - strand at 410.715 kb on + strand at 410.715 kb on + strand at 410.719 kb on + strand at 410.719 kb on + strand at 410.722 kb on - strand at 410.722 kb on - strand at 410.724 kb on - strand at 410.783 kb on - strand at 410.787 kb on + strand at 410.787 kb on + strand at 410.787 kb on + strand at 410.818 kb on - strand at 410.830 kb on - strand at 410.835 kb on - strand at 410.835 kb on - strand at 410.842 kb on + strand at 410.842 kb on + strand at 410.843 kb on - strand at 410.847 kb on - strand at 410.847 kb on - strand at 410.903 kb on + strand at 410.904 kb on - strand at 410.967 kb on - strand at 410.967 kb on - strand at 410.986 kb on + strand at 410.986 kb on + strand at 410.987 kb on - strand at 410.988 kb on + strand at 410.988 kb on + strand at 410.988 kb on + strand at 410.989 kb on - strand at 410.997 kb on + strand at 410.998 kb on - strand at 411.028 kb on - strand at 411.035 kb on + strand at 411.035 kb on + strand at 411.052 kb on + strand at 411.054 kb on + strand at 411.054 kb on + strand at 411.054 kb on + strand at 411.168 kb on + strand at 411.169 kb on - strand at 411.190 kb on + strand at 411.191 kb on - strand at 411.191 kb on - strand at 411.223 kb on - strand at 411.233 kb on - strand at 411.241 kb on + strand at 411.247 kb on - strand at 411.247 kb on - strand at 411.301 kb on - strand at 411.306 kb on + strand at 411.377 kb on - strand at 411.380 kb on - strand at 411.380 kb on - strand at 411.382 kb on - strand at 411.426 kb on - strand, within BACOVA_04967 at 411.440 kb on + strand, within BACOVA_04967 at 411.441 kb on - strand, within BACOVA_04967 at 411.464 kb on + strand, within BACOVA_04967 at 411.465 kb on - strand, within BACOVA_04967 at 411.466 kb on + strand, within BACOVA_04967 at 411.466 kb on + strand, within BACOVA_04967 at 411.472 kb on + strand, within BACOVA_04967 at 411.472 kb on + strand, within BACOVA_04967 at 411.475 kb on + strand, within BACOVA_04967 at 411.491 kb on + strand, within BACOVA_04967 at 411.528 kb on + strand, within BACOVA_04967 at 411.553 kb on + strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.598 kb on + strand, within BACOVA_04967 at 411.617 kb on - strand, within BACOVA_04967 at 411.625 kb on + strand, within BACOVA_04967 at 411.626 kb on - strand, within BACOVA_04967 at 411.630 kb on - strand, within BACOVA_04967 at 411.632 kb on + strand, within BACOVA_04967 at 411.632 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.637 kb on - strand, within BACOVA_04967 at 411.637 kb on - strand, within BACOVA_04967 at 411.712 kb on - strand, within BACOVA_04967 at 411.767 kb on - strand, within BACOVA_04967 at 411.767 kb on - strand, within BACOVA_04967 at 411.793 kb on + strand, within BACOVA_04967 at 411.846 kb on - strand, within BACOVA_04967 at 411.849 kb on + strand, within BACOVA_04967
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C) remove 407,831 + BACOVA_04965 0.49 -1.0 407,858 + BACOVA_04965 0.50 +0.7 407,903 - BACOVA_04965 0.53 +1.7 407,905 + BACOVA_04965 0.53 -0.3 407,929 + BACOVA_04965 0.54 -0.1 407,929 + BACOVA_04965 0.54 -1.3 408,038 - BACOVA_04965 0.61 -0.8 408,042 - BACOVA_04965 0.61 +0.3 408,042 - BACOVA_04965 0.61 +0.8 408,062 + BACOVA_04965 0.62 +1.0 408,064 + BACOVA_04965 0.62 -0.8 408,125 - BACOVA_04965 0.66 -2.3 408,125 - BACOVA_04965 0.66 +0.3 408,134 - BACOVA_04965 0.66 +1.6 408,134 - BACOVA_04965 0.66 +0.6 408,134 - BACOVA_04965 0.66 +0.1 408,153 - BACOVA_04965 0.67 -0.1 408,219 - BACOVA_04965 0.71 +1.2 408,240 + BACOVA_04965 0.73 +0.1 408,241 - BACOVA_04965 0.73 -0.9 408,302 + BACOVA_04965 0.76 +0.1 408,326 + BACOVA_04965 0.78 +1.1 408,327 - BACOVA_04965 0.78 -2.0 408,328 + BACOVA_04965 0.78 -1.8 408,328 + BACOVA_04965 0.78 -0.2 408,329 - BACOVA_04965 0.78 +0.1 408,397 - BACOVA_04965 0.82 -0.7 408,478 + BACOVA_04965 0.86 +0.5 408,483 + BACOVA_04965 0.87 +0.1 408,520 - BACOVA_04965 0.89 +1.0 408,575 - -0.9 408,592 + -0.4 408,592 + -0.6 408,596 + +0.1 408,596 + +0.9 408,597 - -1.1 408,597 - +1.0 408,599 - -0.6 408,599 - -0.7 408,603 - +0.3 408,603 - -0.2 408,637 + -0.0 408,637 + -0.5 408,637 + +0.1 408,638 - +0.1 408,638 - -0.6 408,644 + -1.1 408,737 - +0.9 408,737 - -0.7 408,737 - +0.4 408,743 - +0.5 408,747 + +0.6 408,747 + -1.5 408,805 + -0.9 408,806 - -0.6 408,807 + -1.3 408,807 + -0.4 408,809 + +0.3 408,809 + +0.5 408,810 - +0.1 408,839 + +0.9 408,954 + -1.4 408,958 + +0.7 409,028 + BACOVA_04966 0.11 +0.4 409,047 + BACOVA_04966 0.12 -0.1 409,066 + BACOVA_04966 0.13 -1.1 409,067 - BACOVA_04966 0.13 -0.3 409,067 - BACOVA_04966 0.13 +1.3 409,069 - BACOVA_04966 0.13 -1.8 409,126 - BACOVA_04966 0.16 +1.1 409,126 - BACOVA_04966 0.16 -0.3 409,154 + BACOVA_04966 0.17 -0.6 409,169 + BACOVA_04966 0.18 -1.5 409,170 - BACOVA_04966 0.18 -0.5 409,215 + BACOVA_04966 0.20 +1.3 409,215 + BACOVA_04966 0.20 -0.1 409,221 + BACOVA_04966 0.21 -0.6 409,247 - BACOVA_04966 0.22 -0.0 409,257 + BACOVA_04966 0.22 -0.3 409,258 - BACOVA_04966 0.22 -0.2 409,262 + BACOVA_04966 0.22 +0.6 409,291 - BACOVA_04966 0.24 +0.6 409,295 - BACOVA_04966 0.24 +0.1 409,309 - BACOVA_04966 0.25 +0.6 409,370 - BACOVA_04966 0.28 +0.9 409,470 + BACOVA_04966 0.32 -0.1 409,490 - BACOVA_04966 0.33 -0.4 409,491 + BACOVA_04966 0.33 +0.3 409,500 + BACOVA_04966 0.34 +0.5 409,501 - BACOVA_04966 0.34 -0.7 409,506 - BACOVA_04966 0.34 -0.7 409,530 - BACOVA_04966 0.35 -0.1 409,538 + BACOVA_04966 0.36 +0.6 409,578 + BACOVA_04966 0.38 -0.7 409,588 - BACOVA_04966 0.38 -0.9 409,597 + BACOVA_04966 0.39 +0.9 409,597 + BACOVA_04966 0.39 +0.6 409,597 + BACOVA_04966 0.39 +0.0 409,662 + BACOVA_04966 0.42 -2.0 409,662 + BACOVA_04966 0.42 +0.8 409,668 + BACOVA_04966 0.42 +0.7 409,702 + BACOVA_04966 0.44 -0.2 409,703 - BACOVA_04966 0.44 +0.7 409,711 - BACOVA_04966 0.44 +0.1 409,711 - BACOVA_04966 0.44 -0.9 409,723 + BACOVA_04966 0.45 -0.8 409,755 + BACOVA_04966 0.46 +0.4 409,798 + BACOVA_04966 0.48 -0.3 409,810 + BACOVA_04966 0.49 -0.6 409,876 - BACOVA_04966 0.52 +0.2 409,876 - BACOVA_04966 0.52 +0.6 409,929 + BACOVA_04966 0.54 -0.5 409,935 + BACOVA_04966 0.55 +1.0 409,935 + BACOVA_04966 0.55 +0.1 409,944 + BACOVA_04966 0.55 -0.2 409,945 - BACOVA_04966 0.55 +0.6 409,980 + BACOVA_04966 0.57 -0.7 410,007 + BACOVA_04966 0.58 +1.5 410,098 + BACOVA_04966 0.63 +1.9 410,099 - BACOVA_04966 0.63 -0.5 410,099 - BACOVA_04966 0.63 -0.7 410,114 + BACOVA_04966 0.63 +0.2 410,169 - BACOVA_04966 0.66 +0.5 410,240 - BACOVA_04966 0.69 +0.1 410,343 + BACOVA_04966 0.74 +1.4 410,355 + BACOVA_04966 0.75 +0.3 410,355 + BACOVA_04966 0.75 -0.3 410,356 - BACOVA_04966 0.75 -1.0 410,356 - BACOVA_04966 0.75 +0.6 410,356 - BACOVA_04966 0.75 +0.3 410,419 - BACOVA_04966 0.78 -0.6 410,442 + BACOVA_04966 0.79 +0.9 410,446 + BACOVA_04966 0.79 -2.7 410,447 - BACOVA_04966 0.79 -0.8 410,447 - BACOVA_04966 0.79 +0.3 410,447 - BACOVA_04966 0.79 -0.4 410,447 - BACOVA_04966 0.79 -0.6 410,452 - BACOVA_04966 0.80 +0.5 410,458 - BACOVA_04966 0.80 +0.6 410,476 + BACOVA_04966 0.81 +1.0 410,483 + BACOVA_04966 0.81 -0.4 410,491 + BACOVA_04966 0.81 +0.9 410,545 + BACOVA_04966 0.84 -0.1 410,546 - BACOVA_04966 0.84 +0.5 410,578 - BACOVA_04966 0.86 +0.2 410,622 + BACOVA_04966 0.88 +0.6 410,628 + BACOVA_04966 0.88 -0.4 410,629 - BACOVA_04966 0.88 -0.0 410,629 - BACOVA_04966 0.88 -0.1 410,638 + BACOVA_04966 0.88 +0.2 410,638 + BACOVA_04966 0.88 -0.4 410,651 - BACOVA_04966 0.89 -0.9 410,654 - BACOVA_04966 0.89 +0.2 410,687 + -0.1 410,687 + -1.0 410,687 + -0.6 410,688 - +1.1 410,691 - +0.5 410,715 + +1.2 410,715 + +0.2 410,719 + -2.4 410,719 + -0.9 410,722 - +0.5 410,722 - -0.8 410,724 - +0.2 410,783 - +0.3 410,787 + -1.0 410,787 + -0.7 410,787 + +0.1 410,818 - +0.6 410,830 - -1.4 410,835 - +0.9 410,835 - -0.3 410,842 + -0.3 410,842 + -0.2 410,843 - -1.8 410,847 - +0.1 410,847 - -1.0 410,903 + -0.7 410,904 - -0.7 410,967 - +0.5 410,967 - +0.5 410,986 + +0.2 410,986 + -0.3 410,987 - +1.7 410,988 + +0.5 410,988 + -0.1 410,988 + -1.0 410,989 - -1.1 410,997 + -0.8 410,998 - -1.1 411,028 - +0.5 411,035 + -0.7 411,035 + +0.2 411,052 + -0.3 411,054 + -0.6 411,054 + +0.3 411,054 + +0.3 411,168 + +1.2 411,169 - -0.1 411,190 + +1.6 411,191 - -0.2 411,191 - +0.1 411,223 - +0.7 411,233 - -0.2 411,241 + -1.8 411,247 - -0.7 411,247 - +0.3 411,301 - -0.1 411,306 + -0.7 411,377 - -0.3 411,380 - -0.9 411,380 - -0.3 411,382 - -0.1 411,426 - BACOVA_04967 0.11 +1.2 411,440 + BACOVA_04967 0.11 -0.9 411,441 - BACOVA_04967 0.11 +0.4 411,464 + BACOVA_04967 0.12 -0.7 411,465 - BACOVA_04967 0.12 -0.4 411,466 + BACOVA_04967 0.12 -2.0 411,466 + BACOVA_04967 0.12 -1.0 411,472 + BACOVA_04967 0.12 +0.2 411,472 + BACOVA_04967 0.12 -0.9 411,475 + BACOVA_04967 0.12 -0.4 411,491 + BACOVA_04967 0.13 -1.9 411,528 + BACOVA_04967 0.14 -0.2 411,553 + BACOVA_04967 0.15 -0.2 411,554 - BACOVA_04967 0.15 +1.8 411,554 - BACOVA_04967 0.15 +0.2 411,554 - BACOVA_04967 0.15 -0.9 411,598 + BACOVA_04967 0.16 -0.8 411,617 - BACOVA_04967 0.16 +0.1 411,625 + BACOVA_04967 0.17 -0.4 411,626 - BACOVA_04967 0.17 -0.9 411,630 - BACOVA_04967 0.17 -0.2 411,632 + BACOVA_04967 0.17 +0.8 411,632 + BACOVA_04967 0.17 -0.9 411,636 + BACOVA_04967 0.17 +0.4 411,636 + BACOVA_04967 0.17 -0.4 411,636 + BACOVA_04967 0.17 +0.7 411,637 - BACOVA_04967 0.17 -0.8 411,637 - BACOVA_04967 0.17 -0.9 411,712 - BACOVA_04967 0.19 +0.8 411,767 - BACOVA_04967 0.21 -1.3 411,767 - BACOVA_04967 0.21 -1.6 411,793 + BACOVA_04967 0.22 +1.8 411,846 - BACOVA_04967 0.23 -2.0 411,849 + BACOVA_04967 0.23 -0.7
Or see this region's nucleotide sequence