Experiment: Glucomannan (konjac) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04458 and BACOVA_04459 are separated by 76 nucleotides BACOVA_04459 and BACOVA_04460 are separated by 0 nucleotides BACOVA_04460 and BACOVA_04461 are separated by 10 nucleotides BACOVA_04461 and BACOVA_04463 are separated by 14 nucleotides BACOVA_04463 and BACOVA_04462 overlap by 2 nucleotides
BACOVA_04458: BACOVA_04458 - peptide chain release factor 3, at 370,447 to 372,021
_04458
BACOVA_04459: BACOVA_04459 - dTDP-4-dehydrorhamnose reductase, at 372,098 to 372,958
_04459
BACOVA_04460: BACOVA_04460 - hypothetical protein, at 372,959 to 373,504
_04460
BACOVA_04461: BACOVA_04461 - translocator protein, LysE family, at 373,515 to 374,267
_04461
BACOVA_04463: BACOVA_04463 - hypothetical protein, at 374,282 to 374,428
_04463
BACOVA_04462: BACOVA_04462 - putative phosphoribosylformylglycinamidine synthase, at 374,427 to 378,131
_04462
Position (kb) 372
373
374 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 371.976 kb on + strand at 372.010 kb on - strand at 372.012 kb on + strand at 372.013 kb on - strand at 372.022 kb on - strand at 372.025 kb on + strand at 372.028 kb on + strand at 372.054 kb on + strand at 372.065 kb on - strand at 372.106 kb on + strand at 372.995 kb on - strand at 373.192 kb on - strand, within BACOVA_04460 at 373.217 kb on - strand, within BACOVA_04460 at 373.389 kb on - strand, within BACOVA_04460 at 373.448 kb on - strand, within BACOVA_04460 at 373.510 kb on - strand at 373.510 kb on - strand at 373.517 kb on - strand at 373.520 kb on - strand at 374.207 kb on - strand at 374.207 kb on - strand at 374.209 kb on - strand at 374.238 kb on - strand at 374.239 kb on + strand at 374.239 kb on + strand at 374.240 kb on - strand at 374.242 kb on - strand at 374.242 kb on - strand at 374.252 kb on + strand at 374.253 kb on - strand at 374.263 kb on + strand at 374.264 kb on - strand at 374.274 kb on + strand at 374.274 kb on + strand at 374.280 kb on + strand at 374.280 kb on + strand at 374.284 kb on - strand at 374.287 kb on + strand at 374.287 kb on + strand at 374.292 kb on + strand at 374.339 kb on + strand, within BACOVA_04463 at 374.339 kb on + strand, within BACOVA_04463 at 374.419 kb on + strand at 374.421 kb on + strand at 374.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C) remove 371,976 + -0.4 372,010 - -1.4 372,012 + -0.2 372,013 - +0.5 372,022 - +0.9 372,025 + -1.2 372,028 + -0.4 372,054 + +0.4 372,065 - -1.1 372,106 + -0.6 372,995 - +0.1 373,192 - BACOVA_04460 0.43 +1.6 373,217 - BACOVA_04460 0.47 +0.6 373,389 - BACOVA_04460 0.79 +1.7 373,448 - BACOVA_04460 0.90 +0.8 373,510 - +0.4 373,510 - +0.6 373,517 - -1.2 373,520 - -1.2 374,207 - +0.7 374,207 - -0.1 374,209 - +0.4 374,238 - -1.0 374,239 + -0.9 374,239 + -1.0 374,240 - +0.5 374,242 - +0.1 374,242 - +0.3 374,252 + -0.4 374,253 - +0.7 374,263 + -1.0 374,264 - +0.5 374,274 + +0.6 374,274 + +0.2 374,280 + -1.0 374,280 + -0.5 374,284 - +0.4 374,287 + -0.6 374,287 + -0.1 374,292 + -0.4 374,339 + BACOVA_04463 0.39 -1.6 374,339 + BACOVA_04463 0.39 -0.3 374,419 + -1.4 374,421 + -4.4 374,422 - -2.2
Or see this region's nucleotide sequence