Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04204

Experiment: Glucomannan (konjac) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04203 and BACOVA_04204 are separated by 30 nucleotidesBACOVA_04204 and BACOVA_04205 are separated by 2 nucleotides BACOVA_04203: BACOVA_04203 - glycosyltransferase, group 2 family protein, at 80,209 to 81,381 _04203 BACOVA_04204: BACOVA_04204 - ribosomal-protein-alanine acetyltransferase, at 81,412 to 81,861 _04204 BACOVA_04205: BACOVA_04205 - ATP-grasp domain protein, at 81,864 to 83,330 _04205 Position (kb) 81 82Strain fitness (log2 ratio) -2 -1 0 1 2at 80.427 kb on - strand, within BACOVA_04203at 80.505 kb on + strand, within BACOVA_04203at 80.507 kb on + strand, within BACOVA_04203at 80.507 kb on + strand, within BACOVA_04203at 80.507 kb on + strand, within BACOVA_04203at 80.508 kb on - strand, within BACOVA_04203at 80.508 kb on - strand, within BACOVA_04203at 80.572 kb on + strand, within BACOVA_04203at 80.572 kb on + strand, within BACOVA_04203at 80.584 kb on - strand, within BACOVA_04203at 80.656 kb on - strand, within BACOVA_04203at 80.769 kb on + strand, within BACOVA_04203at 80.874 kb on - strand, within BACOVA_04203at 80.874 kb on - strand, within BACOVA_04203at 80.949 kb on - strand, within BACOVA_04203at 80.952 kb on + strand, within BACOVA_04203at 80.952 kb on + strand, within BACOVA_04203at 80.952 kb on + strand, within BACOVA_04203at 80.953 kb on - strand, within BACOVA_04203at 81.003 kb on - strand, within BACOVA_04203at 81.011 kb on + strand, within BACOVA_04203at 81.011 kb on + strand, within BACOVA_04203at 81.011 kb on + strand, within BACOVA_04203at 81.012 kb on - strand, within BACOVA_04203at 81.012 kb on - strand, within BACOVA_04203at 81.015 kb on + strand, within BACOVA_04203at 81.050 kb on - strand, within BACOVA_04203at 81.050 kb on - strand, within BACOVA_04203at 81.051 kb on + strand, within BACOVA_04203at 81.051 kb on + strand, within BACOVA_04203at 81.051 kb on + strand, within BACOVA_04203at 81.052 kb on - strand, within BACOVA_04203at 81.052 kb on - strand, within BACOVA_04203at 81.052 kb on - strand, within BACOVA_04203at 81.080 kb on + strand, within BACOVA_04203at 81.089 kb on - strand, within BACOVA_04203at 81.122 kb on + strand, within BACOVA_04203at 81.128 kb on - strand, within BACOVA_04203at 81.128 kb on - strand, within BACOVA_04203at 81.139 kb on - strand, within BACOVA_04203at 81.152 kb on + strand, within BACOVA_04203at 81.165 kb on + strand, within BACOVA_04203at 81.165 kb on + strand, within BACOVA_04203at 81.219 kb on + strand, within BACOVA_04203at 81.224 kb on + strand, within BACOVA_04203at 81.225 kb on - strand, within BACOVA_04203at 81.278 kb on - strandat 81.278 kb on - strandat 81.281 kb on - strandat 81.318 kb on - strandat 81.407 kb on + strandat 81.430 kb on - strandat 81.432 kb on - strandat 81.435 kb on + strandat 81.435 kb on + strandat 81.435 kb on + strandat 81.436 kb on - strandat 81.436 kb on - strandat 81.436 kb on - strandat 81.458 kb on + strand, within BACOVA_04204at 81.459 kb on - strand, within BACOVA_04204at 81.502 kb on + strand, within BACOVA_04204at 81.502 kb on + strand, within BACOVA_04204at 81.503 kb on - strand, within BACOVA_04204at 81.520 kb on - strand, within BACOVA_04204at 81.520 kb on - strand, within BACOVA_04204at 81.559 kb on - strand, within BACOVA_04204at 81.559 kb on - strand, within BACOVA_04204at 81.559 kb on - strand, within BACOVA_04204at 81.595 kb on + strand, within BACOVA_04204at 81.621 kb on - strand, within BACOVA_04204at 81.645 kb on - strand, within BACOVA_04204at 81.652 kb on + strand, within BACOVA_04204at 81.675 kb on - strand, within BACOVA_04204at 81.677 kb on - strand, within BACOVA_04204at 81.689 kb on + strand, within BACOVA_04204at 81.690 kb on - strand, within BACOVA_04204at 81.690 kb on - strand, within BACOVA_04204at 81.690 kb on - strand, within BACOVA_04204at 81.722 kb on + strand, within BACOVA_04204at 81.861 kb on + strandat 81.988 kb on + strandat 81.988 kb on + strandat 81.988 kb on + strandat 81.988 kb on + strandat 81.988 kb on + strandat 81.995 kb on + strandat 82.025 kb on - strand, within BACOVA_04205at 82.056 kb on + strand, within BACOVA_04205at 82.056 kb on + strand, within BACOVA_04205at 82.065 kb on - strand, within BACOVA_04205at 82.090 kb on + strand, within BACOVA_04205at 82.107 kb on + strand, within BACOVA_04205at 82.107 kb on + strand, within BACOVA_04205at 82.148 kb on - strand, within BACOVA_04205at 82.174 kb on + strand, within BACOVA_04205at 82.175 kb on - strand, within BACOVA_04205at 82.177 kb on + strand, within BACOVA_04205at 82.178 kb on - strand, within BACOVA_04205at 82.281 kb on + strand, within BACOVA_04205at 82.282 kb on - strand, within BACOVA_04205at 82.282 kb on - strand, within BACOVA_04205at 82.377 kb on + strand, within BACOVA_04205at 82.477 kb on + strand, within BACOVA_04205at 82.490 kb on + strand, within BACOVA_04205at 82.565 kb on + strand, within BACOVA_04205at 82.565 kb on + strand, within BACOVA_04205at 82.590 kb on - strand, within BACOVA_04205at 82.595 kb on + strand, within BACOVA_04205at 82.596 kb on - strand, within BACOVA_04205at 82.671 kb on - strand, within BACOVA_04205at 82.671 kb on - strand, within BACOVA_04205at 82.703 kb on + strand, within BACOVA_04205at 82.788 kb on + strand, within BACOVA_04205at 82.788 kb on + strand, within BACOVA_04205at 82.814 kb on + strand, within BACOVA_04205at 82.815 kb on - strand, within BACOVA_04205at 82.844 kb on + strand, within BACOVA_04205at 82.845 kb on - strand, within BACOVA_04205

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C)
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80,427 - BACOVA_04203 0.19 +0.7
80,505 + BACOVA_04203 0.25 +0.6
80,507 + BACOVA_04203 0.25 +0.0
80,507 + BACOVA_04203 0.25 +0.6
80,507 + BACOVA_04203 0.25 -0.6
80,508 - BACOVA_04203 0.25 -0.1
80,508 - BACOVA_04203 0.25 -0.5
80,572 + BACOVA_04203 0.31 +0.2
80,572 + BACOVA_04203 0.31 +0.4
80,584 - BACOVA_04203 0.32 +0.1
80,656 - BACOVA_04203 0.38 +0.6
80,769 + BACOVA_04203 0.48 -0.2
80,874 - BACOVA_04203 0.57 -1.0
80,874 - BACOVA_04203 0.57 +0.4
80,949 - BACOVA_04203 0.63 -0.9
80,952 + BACOVA_04203 0.63 +0.4
80,952 + BACOVA_04203 0.63 +0.4
80,952 + BACOVA_04203 0.63 -1.4
80,953 - BACOVA_04203 0.63 -0.1
81,003 - BACOVA_04203 0.68 -1.0
81,011 + BACOVA_04203 0.68 +0.6
81,011 + BACOVA_04203 0.68 +0.3
81,011 + BACOVA_04203 0.68 +0.8
81,012 - BACOVA_04203 0.68 +0.3
81,012 - BACOVA_04203 0.68 +1.0
81,015 + BACOVA_04203 0.69 -0.4
81,050 - BACOVA_04203 0.72 +0.4
81,050 - BACOVA_04203 0.72 +0.7
81,051 + BACOVA_04203 0.72 -0.0
81,051 + BACOVA_04203 0.72 +0.1
81,051 + BACOVA_04203 0.72 +1.2
81,052 - BACOVA_04203 0.72 -0.8
81,052 - BACOVA_04203 0.72 +0.1
81,052 - BACOVA_04203 0.72 +1.1
81,080 + BACOVA_04203 0.74 -0.3
81,089 - BACOVA_04203 0.75 -0.1
81,122 + BACOVA_04203 0.78 +0.2
81,128 - BACOVA_04203 0.78 +1.4
81,128 - BACOVA_04203 0.78 -0.5
81,139 - BACOVA_04203 0.79 -0.6
81,152 + BACOVA_04203 0.80 +0.4
81,165 + BACOVA_04203 0.82 +0.7
81,165 + BACOVA_04203 0.82 -0.6
81,219 + BACOVA_04203 0.86 -0.1
81,224 + BACOVA_04203 0.87 -0.8
81,225 - BACOVA_04203 0.87 +0.8
81,278 - +0.4
81,278 - +0.2
81,281 - +0.1
81,318 - +0.5
81,407 + +0.2
81,430 - +0.3
81,432 - +0.0
81,435 + +1.1
81,435 + +0.1
81,435 + +0.2
81,436 - -1.6
81,436 - +0.3
81,436 - +0.6
81,458 + BACOVA_04204 0.10 +0.1
81,459 - BACOVA_04204 0.10 +1.8
81,502 + BACOVA_04204 0.20 +0.6
81,502 + BACOVA_04204 0.20 -0.2
81,503 - BACOVA_04204 0.20 -1.4
81,520 - BACOVA_04204 0.24 -0.1
81,520 - BACOVA_04204 0.24 -0.2
81,559 - BACOVA_04204 0.33 -1.4
81,559 - BACOVA_04204 0.33 -0.5
81,559 - BACOVA_04204 0.33 -0.1
81,595 + BACOVA_04204 0.41 +0.6
81,621 - BACOVA_04204 0.46 -1.5
81,645 - BACOVA_04204 0.52 -1.1
81,652 + BACOVA_04204 0.53 -0.1
81,675 - BACOVA_04204 0.58 -0.2
81,677 - BACOVA_04204 0.59 +0.8
81,689 + BACOVA_04204 0.62 +1.4
81,690 - BACOVA_04204 0.62 -1.2
81,690 - BACOVA_04204 0.62 +1.5
81,690 - BACOVA_04204 0.62 -1.5
81,722 + BACOVA_04204 0.69 -2.0
81,861 + -0.2
81,988 + +0.7
81,988 + +1.6
81,988 + -0.1
81,988 + -2.0
81,988 + +0.3
81,995 + +0.4
82,025 - BACOVA_04205 0.11 +0.3
82,056 + BACOVA_04205 0.13 -1.6
82,056 + BACOVA_04205 0.13 -0.0
82,065 - BACOVA_04205 0.14 +0.8
82,090 + BACOVA_04205 0.15 -0.3
82,107 + BACOVA_04205 0.17 +0.3
82,107 + BACOVA_04205 0.17 -0.8
82,148 - BACOVA_04205 0.19 +0.6
82,174 + BACOVA_04205 0.21 -1.1
82,175 - BACOVA_04205 0.21 -0.6
82,177 + BACOVA_04205 0.21 +0.9
82,178 - BACOVA_04205 0.21 -1.4
82,281 + BACOVA_04205 0.28 -1.1
82,282 - BACOVA_04205 0.28 +0.0
82,282 - BACOVA_04205 0.28 -0.5
82,377 + BACOVA_04205 0.35 +0.5
82,477 + BACOVA_04205 0.42 +0.2
82,490 + BACOVA_04205 0.43 +0.2
82,565 + BACOVA_04205 0.48 -0.5
82,565 + BACOVA_04205 0.48 -1.9
82,590 - BACOVA_04205 0.49 +0.7
82,595 + BACOVA_04205 0.50 -1.2
82,596 - BACOVA_04205 0.50 +0.3
82,671 - BACOVA_04205 0.55 +1.7
82,671 - BACOVA_04205 0.55 -0.0
82,703 + BACOVA_04205 0.57 -0.8
82,788 + BACOVA_04205 0.63 -1.1
82,788 + BACOVA_04205 0.63 -1.4
82,814 + BACOVA_04205 0.65 -0.4
82,815 - BACOVA_04205 0.65 +0.8
82,844 + BACOVA_04205 0.67 +0.4
82,845 - BACOVA_04205 0.67 +0.2

Or see this region's nucleotide sequence