Experiment: Glucomannan (konjac) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04058 and BACOVA_04057 overlap by 14 nucleotides BACOVA_04057 and BACOVA_04059 are separated by 26 nucleotides BACOVA_04059 and BACOVA_04060 overlap by 4 nucleotides BACOVA_04060 and BACOVA_04061 are separated by 4 nucleotides
BACOVA_04058: BACOVA_04058 - transporter, SSS family, at 389,911 to 391,362
_04058
BACOVA_04057: BACOVA_04057 - recombination protein RecR, at 391,349 to 392,074
_04057
BACOVA_04059: BACOVA_04059 - hypothetical protein, at 392,101 to 392,559
_04059
BACOVA_04060: BACOVA_04060 - acetyltransferase, GNAT family, at 392,556 to 393,092
_04060
BACOVA_04061: BACOVA_04061 - putative ACR, COG1678, at 393,097 to 393,687
_04061
Position (kb) 392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 391.105 kb on - strand, within BACOVA_04058 at 391.152 kb on + strand, within BACOVA_04058 at 391.153 kb on - strand, within BACOVA_04058 at 391.154 kb on + strand, within BACOVA_04058 at 391.155 kb on - strand, within BACOVA_04058 at 391.241 kb on - strand at 391.241 kb on - strand at 391.242 kb on + strand at 391.244 kb on + strand at 391.244 kb on + strand at 391.324 kb on + strand at 391.354 kb on + strand at 391.355 kb on - strand at 391.355 kb on - strand at 391.355 kb on - strand at 391.358 kb on - strand at 391.377 kb on - strand at 391.456 kb on + strand, within BACOVA_04057 at 391.477 kb on + strand, within BACOVA_04057 at 391.477 kb on + strand, within BACOVA_04057 at 391.479 kb on + strand, within BACOVA_04057 at 391.603 kb on + strand, within BACOVA_04057 at 391.609 kb on - strand, within BACOVA_04057 at 391.651 kb on + strand, within BACOVA_04057 at 391.775 kb on + strand, within BACOVA_04057 at 391.919 kb on - strand, within BACOVA_04057 at 391.928 kb on + strand, within BACOVA_04057 at 391.931 kb on - strand, within BACOVA_04057 at 391.949 kb on - strand, within BACOVA_04057 at 391.975 kb on - strand, within BACOVA_04057 at 392.008 kb on - strand at 392.009 kb on + strand at 392.080 kb on - strand at 392.226 kb on + strand, within BACOVA_04059 at 392.242 kb on + strand, within BACOVA_04059 at 392.344 kb on - strand, within BACOVA_04059 at 392.402 kb on - strand, within BACOVA_04059 at 392.406 kb on - strand, within BACOVA_04059 at 392.409 kb on + strand, within BACOVA_04059 at 392.410 kb on - strand, within BACOVA_04059 at 392.434 kb on + strand, within BACOVA_04059 at 392.434 kb on + strand, within BACOVA_04059 at 392.622 kb on - strand, within BACOVA_04060 at 392.624 kb on - strand, within BACOVA_04060 at 392.691 kb on + strand, within BACOVA_04060 at 392.708 kb on + strand, within BACOVA_04060 at 392.708 kb on + strand, within BACOVA_04060 at 392.708 kb on + strand, within BACOVA_04060 at 392.709 kb on - strand, within BACOVA_04060 at 392.749 kb on + strand, within BACOVA_04060 at 392.750 kb on - strand, within BACOVA_04060 at 392.784 kb on - strand, within BACOVA_04060 at 392.792 kb on + strand, within BACOVA_04060 at 392.792 kb on + strand, within BACOVA_04060 at 392.801 kb on + strand, within BACOVA_04060 at 392.804 kb on + strand, within BACOVA_04060 at 392.805 kb on - strand, within BACOVA_04060 at 392.944 kb on - strand, within BACOVA_04060 at 392.944 kb on - strand, within BACOVA_04060 at 392.963 kb on + strand, within BACOVA_04060 at 393.084 kb on - strand at 393.108 kb on + strand at 393.151 kb on + strand at 393.151 kb on + strand at 393.152 kb on + strand at 393.178 kb on - strand, within BACOVA_04061 at 393.203 kb on + strand, within BACOVA_04061 at 393.204 kb on - strand, within BACOVA_04061 at 393.253 kb on - strand, within BACOVA_04061 at 393.256 kb on + strand, within BACOVA_04061 at 393.326 kb on - strand, within BACOVA_04061 at 393.326 kb on - strand, within BACOVA_04061 at 393.330 kb on + strand, within BACOVA_04061 at 393.333 kb on - strand, within BACOVA_04061 at 393.366 kb on - strand, within BACOVA_04061 at 393.399 kb on + strand, within BACOVA_04061 at 393.400 kb on - strand, within BACOVA_04061 at 393.406 kb on + strand, within BACOVA_04061 at 393.407 kb on - strand, within BACOVA_04061 at 393.425 kb on - strand, within BACOVA_04061 at 393.442 kb on - strand, within BACOVA_04061 at 393.476 kb on + strand, within BACOVA_04061 at 393.502 kb on - strand, within BACOVA_04061
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C) remove 391,105 - BACOVA_04058 0.82 -0.5 391,152 + BACOVA_04058 0.85 +1.4 391,153 - BACOVA_04058 0.86 -0.4 391,154 + BACOVA_04058 0.86 -0.2 391,155 - BACOVA_04058 0.86 +1.8 391,241 - +0.8 391,241 - +0.4 391,242 + -0.5 391,244 + +0.3 391,244 + -0.0 391,324 + -0.1 391,354 + +0.2 391,355 - +0.2 391,355 - -0.8 391,355 - -1.9 391,358 - +1.5 391,377 - -1.5 391,456 + BACOVA_04057 0.15 -1.2 391,477 + BACOVA_04057 0.18 -1.7 391,477 + BACOVA_04057 0.18 -1.0 391,479 + BACOVA_04057 0.18 -0.8 391,603 + BACOVA_04057 0.35 +0.2 391,609 - BACOVA_04057 0.36 -1.9 391,651 + BACOVA_04057 0.42 +0.6 391,775 + BACOVA_04057 0.59 -1.1 391,919 - BACOVA_04057 0.79 -1.0 391,928 + BACOVA_04057 0.80 -0.8 391,931 - BACOVA_04057 0.80 -1.5 391,949 - BACOVA_04057 0.83 +1.9 391,975 - BACOVA_04057 0.86 -2.0 392,008 - -0.8 392,009 + -1.4 392,080 - -0.5 392,226 + BACOVA_04059 0.27 +0.4 392,242 + BACOVA_04059 0.31 +0.3 392,344 - BACOVA_04059 0.53 -1.2 392,402 - BACOVA_04059 0.66 +0.5 392,406 - BACOVA_04059 0.66 -0.8 392,409 + BACOVA_04059 0.67 -0.4 392,410 - BACOVA_04059 0.67 -1.3 392,434 + BACOVA_04059 0.73 -2.4 392,434 + BACOVA_04059 0.73 -1.4 392,622 - BACOVA_04060 0.12 -1.2 392,624 - BACOVA_04060 0.13 -0.9 392,691 + BACOVA_04060 0.25 -2.5 392,708 + BACOVA_04060 0.28 +0.0 392,708 + BACOVA_04060 0.28 -0.5 392,708 + BACOVA_04060 0.28 -2.8 392,709 - BACOVA_04060 0.28 -0.8 392,749 + BACOVA_04060 0.36 -1.2 392,750 - BACOVA_04060 0.36 -0.8 392,784 - BACOVA_04060 0.42 -1.5 392,792 + BACOVA_04060 0.44 +0.6 392,792 + BACOVA_04060 0.44 -0.5 392,801 + BACOVA_04060 0.46 -0.8 392,804 + BACOVA_04060 0.46 -0.5 392,805 - BACOVA_04060 0.46 -1.0 392,944 - BACOVA_04060 0.72 -1.5 392,944 - BACOVA_04060 0.72 -1.0 392,963 + BACOVA_04060 0.76 -0.0 393,084 - -1.1 393,108 + +0.1 393,151 + +0.5 393,151 + +0.1 393,152 + -0.5 393,178 - BACOVA_04061 0.14 -0.9 393,203 + BACOVA_04061 0.18 -2.3 393,204 - BACOVA_04061 0.18 +0.4 393,253 - BACOVA_04061 0.26 -1.3 393,256 + BACOVA_04061 0.27 -0.1 393,326 - BACOVA_04061 0.39 -2.1 393,326 - BACOVA_04061 0.39 -0.0 393,330 + BACOVA_04061 0.39 +0.5 393,333 - BACOVA_04061 0.40 -0.4 393,366 - BACOVA_04061 0.46 -1.0 393,399 + BACOVA_04061 0.51 -0.2 393,400 - BACOVA_04061 0.51 -1.9 393,406 + BACOVA_04061 0.52 +0.2 393,407 - BACOVA_04061 0.52 +1.8 393,425 - BACOVA_04061 0.55 -0.2 393,442 - BACOVA_04061 0.58 +0.2 393,476 + BACOVA_04061 0.64 +0.0 393,502 - BACOVA_04061 0.69 +0.9
Or see this region's nucleotide sequence