Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03639

Experiment: Glucomannan (konjac) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03638 and BACOVA_03639 are separated by 18 nucleotidesBACOVA_03639 and BACOVA_03640 are separated by 69 nucleotides BACOVA_03638: BACOVA_03638 - arylsulfatase, at 455,247 to 456,803 _03638 BACOVA_03639: BACOVA_03639 - raffinose synthase or seed imbibition protein Sip1, at 456,822 to 458,834 _03639 BACOVA_03640: BACOVA_03640 - hypothetical protein, at 458,904 to 460,286 _03640 Position (kb) 456 457 458 459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 455.858 kb on + strand, within BACOVA_03638at 455.859 kb on - strand, within BACOVA_03638at 455.941 kb on + strand, within BACOVA_03638at 455.942 kb on - strand, within BACOVA_03638at 455.986 kb on + strand, within BACOVA_03638at 456.038 kb on - strand, within BACOVA_03638at 456.043 kb on + strand, within BACOVA_03638at 456.058 kb on + strand, within BACOVA_03638at 456.193 kb on + strand, within BACOVA_03638at 456.194 kb on - strand, within BACOVA_03638at 456.249 kb on + strand, within BACOVA_03638at 456.288 kb on - strand, within BACOVA_03638at 456.292 kb on - strand, within BACOVA_03638at 456.338 kb on + strand, within BACOVA_03638at 456.339 kb on - strand, within BACOVA_03638at 456.378 kb on - strand, within BACOVA_03638at 456.413 kb on - strand, within BACOVA_03638at 456.546 kb on - strand, within BACOVA_03638at 456.556 kb on + strand, within BACOVA_03638at 456.566 kb on + strand, within BACOVA_03638at 456.575 kb on + strand, within BACOVA_03638at 456.575 kb on + strand, within BACOVA_03638at 456.575 kb on + strand, within BACOVA_03638at 456.576 kb on - strand, within BACOVA_03638at 456.599 kb on + strand, within BACOVA_03638at 456.626 kb on - strand, within BACOVA_03638at 456.681 kb on + strandat 456.786 kb on + strandat 456.813 kb on + strandat 456.813 kb on + strandat 456.814 kb on - strandat 456.823 kb on + strandat 456.824 kb on - strandat 456.824 kb on - strandat 456.930 kb on + strandat 456.931 kb on - strandat 456.931 kb on - strandat 456.967 kb on - strandat 457.041 kb on + strand, within BACOVA_03639at 457.053 kb on - strand, within BACOVA_03639at 457.076 kb on + strand, within BACOVA_03639at 457.077 kb on - strand, within BACOVA_03639at 457.077 kb on - strand, within BACOVA_03639at 457.119 kb on + strand, within BACOVA_03639at 457.125 kb on + strand, within BACOVA_03639at 457.128 kb on - strand, within BACOVA_03639at 457.128 kb on - strand, within BACOVA_03639at 457.131 kb on - strand, within BACOVA_03639at 457.131 kb on - strand, within BACOVA_03639at 457.171 kb on + strand, within BACOVA_03639at 457.220 kb on + strand, within BACOVA_03639at 457.262 kb on + strand, within BACOVA_03639at 457.262 kb on + strand, within BACOVA_03639at 457.262 kb on + strand, within BACOVA_03639at 457.383 kb on + strand, within BACOVA_03639at 457.383 kb on + strand, within BACOVA_03639at 457.383 kb on + strand, within BACOVA_03639at 457.383 kb on + strand, within BACOVA_03639at 457.419 kb on + strand, within BACOVA_03639at 457.423 kb on + strand, within BACOVA_03639at 457.423 kb on + strand, within BACOVA_03639at 457.535 kb on + strand, within BACOVA_03639at 457.543 kb on + strand, within BACOVA_03639at 457.544 kb on - strand, within BACOVA_03639at 457.620 kb on - strand, within BACOVA_03639at 457.628 kb on + strand, within BACOVA_03639at 457.629 kb on - strand, within BACOVA_03639at 457.641 kb on + strand, within BACOVA_03639at 457.646 kb on + strand, within BACOVA_03639at 457.659 kb on - strand, within BACOVA_03639at 457.668 kb on + strand, within BACOVA_03639at 457.669 kb on - strand, within BACOVA_03639at 457.712 kb on + strand, within BACOVA_03639at 457.713 kb on - strand, within BACOVA_03639at 457.721 kb on + strand, within BACOVA_03639at 457.742 kb on + strand, within BACOVA_03639at 457.743 kb on - strand, within BACOVA_03639at 457.743 kb on - strand, within BACOVA_03639at 457.743 kb on - strand, within BACOVA_03639at 457.752 kb on - strand, within BACOVA_03639at 457.752 kb on - strand, within BACOVA_03639at 457.753 kb on + strand, within BACOVA_03639at 457.753 kb on + strand, within BACOVA_03639at 457.778 kb on + strand, within BACOVA_03639at 457.779 kb on - strand, within BACOVA_03639at 457.779 kb on - strand, within BACOVA_03639at 457.886 kb on - strand, within BACOVA_03639at 457.891 kb on + strand, within BACOVA_03639at 457.892 kb on - strand, within BACOVA_03639at 457.926 kb on - strand, within BACOVA_03639at 457.968 kb on + strand, within BACOVA_03639at 457.968 kb on + strand, within BACOVA_03639at 457.969 kb on - strand, within BACOVA_03639at 457.974 kb on + strand, within BACOVA_03639at 458.107 kb on + strand, within BACOVA_03639at 458.108 kb on - strand, within BACOVA_03639at 458.136 kb on - strand, within BACOVA_03639at 458.136 kb on - strand, within BACOVA_03639at 458.152 kb on - strand, within BACOVA_03639at 458.152 kb on - strand, within BACOVA_03639at 458.171 kb on + strand, within BACOVA_03639at 458.176 kb on + strand, within BACOVA_03639at 458.177 kb on - strand, within BACOVA_03639at 458.234 kb on + strand, within BACOVA_03639at 458.235 kb on - strand, within BACOVA_03639at 458.235 kb on - strand, within BACOVA_03639at 458.238 kb on + strand, within BACOVA_03639at 458.259 kb on + strand, within BACOVA_03639at 458.287 kb on + strand, within BACOVA_03639at 458.288 kb on - strand, within BACOVA_03639at 458.302 kb on - strand, within BACOVA_03639at 458.302 kb on - strand, within BACOVA_03639at 458.302 kb on - strand, within BACOVA_03639at 458.309 kb on - strand, within BACOVA_03639at 458.309 kb on - strand, within BACOVA_03639at 458.310 kb on + strand, within BACOVA_03639at 458.310 kb on + strand, within BACOVA_03639at 458.376 kb on - strand, within BACOVA_03639at 458.382 kb on - strand, within BACOVA_03639at 458.383 kb on + strand, within BACOVA_03639at 458.383 kb on + strand, within BACOVA_03639at 458.384 kb on - strand, within BACOVA_03639at 458.391 kb on - strand, within BACOVA_03639at 458.391 kb on - strand, within BACOVA_03639at 458.430 kb on - strand, within BACOVA_03639at 458.461 kb on + strand, within BACOVA_03639at 458.472 kb on - strand, within BACOVA_03639at 458.537 kb on - strand, within BACOVA_03639at 458.540 kb on + strand, within BACOVA_03639at 458.657 kb on - strandat 458.717 kb on - strandat 458.717 kb on - strandat 458.717 kb on - strandat 458.719 kb on - strandat 458.738 kb on + strandat 458.738 kb on + strandat 458.739 kb on - strandat 458.739 kb on - strandat 458.741 kb on - strandat 458.810 kb on - strandat 458.864 kb on + strandat 458.868 kb on + strandat 458.894 kb on + strandat 458.902 kb on + strandat 458.906 kb on - strandat 458.915 kb on + strandat 458.915 kb on + strandat 458.915 kb on + strandat 458.916 kb on - strandat 458.933 kb on + strandat 458.973 kb on + strandat 458.988 kb on + strandat 459.073 kb on - strand, within BACOVA_03640at 459.073 kb on - strand, within BACOVA_03640at 459.078 kb on - strand, within BACOVA_03640at 459.078 kb on - strand, within BACOVA_03640at 459.078 kb on - strand, within BACOVA_03640at 459.122 kb on + strand, within BACOVA_03640at 459.185 kb on + strand, within BACOVA_03640at 459.185 kb on + strand, within BACOVA_03640at 459.216 kb on + strand, within BACOVA_03640at 459.217 kb on - strand, within BACOVA_03640at 459.235 kb on + strand, within BACOVA_03640at 459.264 kb on - strand, within BACOVA_03640at 459.328 kb on + strand, within BACOVA_03640at 459.355 kb on + strand, within BACOVA_03640at 459.363 kb on - strand, within BACOVA_03640at 459.414 kb on + strand, within BACOVA_03640at 459.449 kb on + strand, within BACOVA_03640at 459.450 kb on - strand, within BACOVA_03640at 459.480 kb on + strand, within BACOVA_03640at 459.503 kb on + strand, within BACOVA_03640at 459.510 kb on - strand, within BACOVA_03640at 459.510 kb on - strand, within BACOVA_03640at 459.537 kb on - strand, within BACOVA_03640at 459.550 kb on + strand, within BACOVA_03640at 459.606 kb on - strand, within BACOVA_03640at 459.610 kb on + strand, within BACOVA_03640at 459.700 kb on - strand, within BACOVA_03640at 459.704 kb on + strand, within BACOVA_03640at 459.704 kb on + strand, within BACOVA_03640at 459.704 kb on + strand, within BACOVA_03640at 459.704 kb on + strand, within BACOVA_03640at 459.704 kb on + strand, within BACOVA_03640at 459.704 kb on + strand, within BACOVA_03640at 459.705 kb on - strand, within BACOVA_03640at 459.705 kb on - strand, within BACOVA_03640at 459.705 kb on - strand, within BACOVA_03640at 459.705 kb on - strand, within BACOVA_03640at 459.705 kb on - strand, within BACOVA_03640at 459.705 kb on - strand, within BACOVA_03640at 459.706 kb on + strand, within BACOVA_03640at 459.706 kb on + strand, within BACOVA_03640at 459.706 kb on + strand, within BACOVA_03640at 459.707 kb on - strand, within BACOVA_03640at 459.709 kb on - strand, within BACOVA_03640at 459.761 kb on + strand, within BACOVA_03640at 459.763 kb on + strand, within BACOVA_03640at 459.764 kb on - strand, within BACOVA_03640at 459.764 kb on - strand, within BACOVA_03640at 459.764 kb on - strand, within BACOVA_03640

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C)
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455,858 + BACOVA_03638 0.39 -1.0
455,859 - BACOVA_03638 0.39 -0.7
455,941 + BACOVA_03638 0.45 -1.1
455,942 - BACOVA_03638 0.45 +2.4
455,986 + BACOVA_03638 0.47 -1.1
456,038 - BACOVA_03638 0.51 -1.4
456,043 + BACOVA_03638 0.51 +0.4
456,058 + BACOVA_03638 0.52 +0.1
456,193 + BACOVA_03638 0.61 -1.8
456,194 - BACOVA_03638 0.61 -2.1
456,249 + BACOVA_03638 0.64 -0.1
456,288 - BACOVA_03638 0.67 +1.9
456,292 - BACOVA_03638 0.67 -0.4
456,338 + BACOVA_03638 0.70 +0.7
456,339 - BACOVA_03638 0.70 -0.4
456,378 - BACOVA_03638 0.73 +0.9
456,413 - BACOVA_03638 0.75 +0.2
456,546 - BACOVA_03638 0.83 -0.0
456,556 + BACOVA_03638 0.84 -0.4
456,566 + BACOVA_03638 0.85 +1.0
456,575 + BACOVA_03638 0.85 -0.9
456,575 + BACOVA_03638 0.85 -1.0
456,575 + BACOVA_03638 0.85 -0.4
456,576 - BACOVA_03638 0.85 +0.7
456,599 + BACOVA_03638 0.87 +0.2
456,626 - BACOVA_03638 0.89 +0.7
456,681 + -0.2
456,786 + +0.1
456,813 + -0.2
456,813 + +0.2
456,814 - +0.3
456,823 + -0.0
456,824 - -0.8
456,824 - +0.1
456,930 + +0.3
456,931 - +0.4
456,931 - +0.3
456,967 - -1.4
457,041 + BACOVA_03639 0.11 +1.0
457,053 - BACOVA_03639 0.11 +0.1
457,076 + BACOVA_03639 0.13 +0.5
457,077 - BACOVA_03639 0.13 -1.6
457,077 - BACOVA_03639 0.13 +0.3
457,119 + BACOVA_03639 0.15 +0.1
457,125 + BACOVA_03639 0.15 +0.6
457,128 - BACOVA_03639 0.15 -1.0
457,128 - BACOVA_03639 0.15 +0.1
457,131 - BACOVA_03639 0.15 +1.0
457,131 - BACOVA_03639 0.15 -1.4
457,171 + BACOVA_03639 0.17 +0.5
457,220 + BACOVA_03639 0.20 +0.1
457,262 + BACOVA_03639 0.22 +0.1
457,262 + BACOVA_03639 0.22 -0.5
457,262 + BACOVA_03639 0.22 +0.1
457,383 + BACOVA_03639 0.28 -1.1
457,383 + BACOVA_03639 0.28 -0.2
457,383 + BACOVA_03639 0.28 +2.3
457,383 + BACOVA_03639 0.28 -1.7
457,419 + BACOVA_03639 0.30 +1.1
457,423 + BACOVA_03639 0.30 +2.3
457,423 + BACOVA_03639 0.30 +0.6
457,535 + BACOVA_03639 0.35 +0.0
457,543 + BACOVA_03639 0.36 -1.0
457,544 - BACOVA_03639 0.36 -0.8
457,620 - BACOVA_03639 0.40 +0.1
457,628 + BACOVA_03639 0.40 +0.1
457,629 - BACOVA_03639 0.40 +0.1
457,641 + BACOVA_03639 0.41 -0.5
457,646 + BACOVA_03639 0.41 +0.3
457,659 - BACOVA_03639 0.42 -1.1
457,668 + BACOVA_03639 0.42 -1.7
457,669 - BACOVA_03639 0.42 -0.1
457,712 + BACOVA_03639 0.44 +0.4
457,713 - BACOVA_03639 0.44 -0.4
457,721 + BACOVA_03639 0.45 -0.3
457,742 + BACOVA_03639 0.46 +0.2
457,743 - BACOVA_03639 0.46 -0.9
457,743 - BACOVA_03639 0.46 +0.0
457,743 - BACOVA_03639 0.46 -0.2
457,752 - BACOVA_03639 0.46 +1.7
457,752 - BACOVA_03639 0.46 -1.0
457,753 + BACOVA_03639 0.46 +0.3
457,753 + BACOVA_03639 0.46 +0.1
457,778 + BACOVA_03639 0.47 -0.5
457,779 - BACOVA_03639 0.48 -0.1
457,779 - BACOVA_03639 0.48 +0.8
457,886 - BACOVA_03639 0.53 -1.6
457,891 + BACOVA_03639 0.53 +0.8
457,892 - BACOVA_03639 0.53 -0.1
457,926 - BACOVA_03639 0.55 +1.1
457,968 + BACOVA_03639 0.57 +0.7
457,968 + BACOVA_03639 0.57 +0.5
457,969 - BACOVA_03639 0.57 -0.8
457,974 + BACOVA_03639 0.57 +0.1
458,107 + BACOVA_03639 0.64 -0.7
458,108 - BACOVA_03639 0.64 +0.6
458,136 - BACOVA_03639 0.65 -0.5
458,136 - BACOVA_03639 0.65 +0.6
458,152 - BACOVA_03639 0.66 +0.4
458,152 - BACOVA_03639 0.66 -0.0
458,171 + BACOVA_03639 0.67 -0.2
458,176 + BACOVA_03639 0.67 +0.3
458,177 - BACOVA_03639 0.67 +1.4
458,234 + BACOVA_03639 0.70 -1.6
458,235 - BACOVA_03639 0.70 -0.7
458,235 - BACOVA_03639 0.70 +1.4
458,238 + BACOVA_03639 0.70 -0.2
458,259 + BACOVA_03639 0.71 -0.8
458,287 + BACOVA_03639 0.73 +1.1
458,288 - BACOVA_03639 0.73 -0.4
458,302 - BACOVA_03639 0.74 +0.1
458,302 - BACOVA_03639 0.74 -0.4
458,302 - BACOVA_03639 0.74 -1.2
458,309 - BACOVA_03639 0.74 +0.2
458,309 - BACOVA_03639 0.74 +0.6
458,310 + BACOVA_03639 0.74 -1.2
458,310 + BACOVA_03639 0.74 +0.6
458,376 - BACOVA_03639 0.77 -1.4
458,382 - BACOVA_03639 0.77 -0.5
458,383 + BACOVA_03639 0.78 -0.0
458,383 + BACOVA_03639 0.78 +0.9
458,384 - BACOVA_03639 0.78 +2.1
458,391 - BACOVA_03639 0.78 -0.9
458,391 - BACOVA_03639 0.78 -0.2
458,430 - BACOVA_03639 0.80 -0.8
458,461 + BACOVA_03639 0.81 -0.1
458,472 - BACOVA_03639 0.82 +2.4
458,537 - BACOVA_03639 0.85 -0.4
458,540 + BACOVA_03639 0.85 +0.7
458,657 - -0.7
458,717 - -0.1
458,717 - -1.2
458,717 - -3.3
458,719 - +0.0
458,738 + -0.0
458,738 + +0.4
458,739 - +1.2
458,739 - +1.5
458,741 - +0.6
458,810 - -1.3
458,864 + -0.1
458,868 + +0.1
458,894 + -1.7
458,902 + -0.5
458,906 - -0.7
458,915 + -0.4
458,915 + +0.2
458,915 + -0.1
458,916 - +0.3
458,933 + -1.6
458,973 + -0.6
458,988 + -0.5
459,073 - BACOVA_03640 0.12 -0.2
459,073 - BACOVA_03640 0.12 +1.1
459,078 - BACOVA_03640 0.13 -1.0
459,078 - BACOVA_03640 0.13 -0.9
459,078 - BACOVA_03640 0.13 +0.8
459,122 + BACOVA_03640 0.16 +1.2
459,185 + BACOVA_03640 0.20 +0.2
459,185 + BACOVA_03640 0.20 -0.6
459,216 + BACOVA_03640 0.23 -1.2
459,217 - BACOVA_03640 0.23 +0.7
459,235 + BACOVA_03640 0.24 +0.3
459,264 - BACOVA_03640 0.26 +0.4
459,328 + BACOVA_03640 0.31 -0.7
459,355 + BACOVA_03640 0.33 -2.4
459,363 - BACOVA_03640 0.33 +2.2
459,414 + BACOVA_03640 0.37 -2.5
459,449 + BACOVA_03640 0.39 +2.1
459,450 - BACOVA_03640 0.39 -0.0
459,480 + BACOVA_03640 0.42 -0.0
459,503 + BACOVA_03640 0.43 -1.8
459,510 - BACOVA_03640 0.44 +0.6
459,510 - BACOVA_03640 0.44 +0.8
459,537 - BACOVA_03640 0.46 +0.5
459,550 + BACOVA_03640 0.47 -1.3
459,606 - BACOVA_03640 0.51 +0.4
459,610 + BACOVA_03640 0.51 +0.2
459,700 - BACOVA_03640 0.58 +0.1
459,704 + BACOVA_03640 0.58 -0.3
459,704 + BACOVA_03640 0.58 +0.1
459,704 + BACOVA_03640 0.58 -0.2
459,704 + BACOVA_03640 0.58 -2.0
459,704 + BACOVA_03640 0.58 -0.6
459,704 + BACOVA_03640 0.58 +0.5
459,705 - BACOVA_03640 0.58 +0.3
459,705 - BACOVA_03640 0.58 +1.3
459,705 - BACOVA_03640 0.58 +0.4
459,705 - BACOVA_03640 0.58 +0.4
459,705 - BACOVA_03640 0.58 -0.4
459,705 - BACOVA_03640 0.58 +0.9
459,706 + BACOVA_03640 0.58 +0.2
459,706 + BACOVA_03640 0.58 +0.0
459,706 + BACOVA_03640 0.58 -0.4
459,707 - BACOVA_03640 0.58 -2.6
459,709 - BACOVA_03640 0.58 -1.6
459,761 + BACOVA_03640 0.62 +0.2
459,763 + BACOVA_03640 0.62 +0.7
459,764 - BACOVA_03640 0.62 -0.2
459,764 - BACOVA_03640 0.62 +0.8
459,764 - BACOVA_03640 0.62 +1.0

Or see this region's nucleotide sequence