Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02654

Experiment: Glucomannan (konjac) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02653 and BACOVA_02654 are separated by 172 nucleotidesBACOVA_02654 and BACOVA_02655 are separated by 17 nucleotidesBACOVA_02655 and BACOVA_02656 are separated by 46 nucleotides BACOVA_02653: BACOVA_02653 - cellulase (glycosyl hydrolase family 5), at 52,663 to 54,171 _02653 BACOVA_02654: BACOVA_02654 - glycosyl hydrolase, family 43, at 54,344 to 55,924 _02654 BACOVA_02655: BACOVA_02655 - hypothetical protein, at 55,942 to 56,046 _02655 BACOVA_02656: BACOVA_02656 - glycosyl hydrolase, family 43, at 56,093 to 57,553 _02656 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 53.433 kb on + strand, within BACOVA_02653at 53.433 kb on + strand, within BACOVA_02653at 53.438 kb on + strand, within BACOVA_02653at 53.481 kb on + strand, within BACOVA_02653at 53.481 kb on + strand, within BACOVA_02653at 53.505 kb on + strand, within BACOVA_02653at 53.537 kb on + strand, within BACOVA_02653at 53.543 kb on - strand, within BACOVA_02653at 53.550 kb on + strand, within BACOVA_02653at 53.611 kb on - strand, within BACOVA_02653at 53.745 kb on + strand, within BACOVA_02653at 53.771 kb on + strand, within BACOVA_02653at 53.772 kb on - strand, within BACOVA_02653at 53.779 kb on + strand, within BACOVA_02653at 53.780 kb on - strand, within BACOVA_02653at 53.784 kb on + strand, within BACOVA_02653at 53.784 kb on + strand, within BACOVA_02653at 53.785 kb on - strand, within BACOVA_02653at 53.785 kb on - strand, within BACOVA_02653at 53.789 kb on - strand, within BACOVA_02653at 53.800 kb on + strand, within BACOVA_02653at 53.800 kb on + strand, within BACOVA_02653at 53.811 kb on + strand, within BACOVA_02653at 53.868 kb on + strand, within BACOVA_02653at 53.869 kb on - strand, within BACOVA_02653at 53.882 kb on - strand, within BACOVA_02653at 53.889 kb on + strand, within BACOVA_02653at 53.893 kb on + strand, within BACOVA_02653at 53.893 kb on + strand, within BACOVA_02653at 53.894 kb on - strand, within BACOVA_02653at 53.894 kb on - strand, within BACOVA_02653at 53.897 kb on + strand, within BACOVA_02653at 53.919 kb on + strand, within BACOVA_02653at 53.931 kb on + strand, within BACOVA_02653at 53.949 kb on + strand, within BACOVA_02653at 53.950 kb on - strand, within BACOVA_02653at 53.950 kb on - strand, within BACOVA_02653at 53.950 kb on - strand, within BACOVA_02653at 53.955 kb on + strand, within BACOVA_02653at 53.977 kb on + strand, within BACOVA_02653at 54.021 kb on + strandat 54.022 kb on - strandat 54.079 kb on + strandat 54.079 kb on + strandat 54.079 kb on + strandat 54.081 kb on + strandat 54.108 kb on + strandat 54.109 kb on - strandat 54.109 kb on - strandat 54.109 kb on - strandat 54.112 kb on + strandat 54.112 kb on + strandat 54.113 kb on - strandat 54.124 kb on - strandat 54.127 kb on - strandat 54.139 kb on - strandat 54.153 kb on + strandat 54.180 kb on - strandat 54.182 kb on - strandat 54.188 kb on - strandat 54.199 kb on - strandat 54.256 kb on + strandat 54.257 kb on - strandat 54.267 kb on + strandat 54.267 kb on + strandat 54.267 kb on + strandat 54.268 kb on - strandat 54.287 kb on + strandat 54.295 kb on + strandat 54.334 kb on + strandat 54.476 kb on + strandat 54.510 kb on + strand, within BACOVA_02654at 54.510 kb on + strand, within BACOVA_02654at 54.511 kb on - strand, within BACOVA_02654at 54.512 kb on + strand, within BACOVA_02654at 54.513 kb on - strand, within BACOVA_02654at 54.513 kb on - strand, within BACOVA_02654at 54.527 kb on - strand, within BACOVA_02654at 54.540 kb on + strand, within BACOVA_02654at 54.544 kb on - strand, within BACOVA_02654at 54.681 kb on - strand, within BACOVA_02654at 54.871 kb on + strand, within BACOVA_02654at 54.937 kb on + strand, within BACOVA_02654at 54.938 kb on - strand, within BACOVA_02654at 54.986 kb on - strand, within BACOVA_02654at 55.105 kb on + strand, within BACOVA_02654at 55.106 kb on - strand, within BACOVA_02654at 55.323 kb on + strand, within BACOVA_02654at 55.326 kb on + strand, within BACOVA_02654at 55.327 kb on - strand, within BACOVA_02654at 55.342 kb on + strand, within BACOVA_02654at 55.365 kb on + strand, within BACOVA_02654at 55.389 kb on - strand, within BACOVA_02654at 55.449 kb on + strand, within BACOVA_02654at 55.462 kb on + strand, within BACOVA_02654at 55.562 kb on - strand, within BACOVA_02654at 55.564 kb on + strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.597 kb on + strand, within BACOVA_02654at 55.598 kb on - strand, within BACOVA_02654at 55.604 kb on - strand, within BACOVA_02654at 55.604 kb on - strand, within BACOVA_02654at 55.611 kb on + strand, within BACOVA_02654at 55.612 kb on - strand, within BACOVA_02654at 55.629 kb on + strand, within BACOVA_02654at 55.629 kb on + strand, within BACOVA_02654at 55.640 kb on - strand, within BACOVA_02654at 55.672 kb on + strand, within BACOVA_02654at 55.713 kb on - strand, within BACOVA_02654at 55.713 kb on - strand, within BACOVA_02654at 55.767 kb on + strandat 55.791 kb on + strandat 55.791 kb on + strandat 55.791 kb on + strandat 55.792 kb on - strandat 55.792 kb on - strandat 55.792 kb on - strandat 55.852 kb on + strandat 55.927 kb on + strandat 55.929 kb on + strandat 55.931 kb on + strandat 55.944 kb on - strandat 56.034 kb on + strand, within BACOVA_02655at 56.094 kb on + strandat 56.166 kb on + strandat 56.166 kb on + strandat 56.166 kb on + strandat 56.167 kb on - strandat 56.167 kb on - strandat 56.170 kb on + strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.175 kb on - strandat 56.176 kb on + strandat 56.176 kb on + strandat 56.177 kb on - strandat 56.177 kb on - strandat 56.177 kb on - strandat 56.181 kb on - strandat 56.189 kb on - strandat 56.242 kb on + strand, within BACOVA_02656at 56.265 kb on - strand, within BACOVA_02656at 56.275 kb on + strand, within BACOVA_02656at 56.276 kb on - strand, within BACOVA_02656at 56.276 kb on - strand, within BACOVA_02656at 56.277 kb on + strand, within BACOVA_02656at 56.277 kb on + strand, within BACOVA_02656at 56.303 kb on + strand, within BACOVA_02656at 56.421 kb on + strand, within BACOVA_02656at 56.641 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.734 kb on - strand, within BACOVA_02656at 56.767 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.850 kb on - strand, within BACOVA_02656at 56.910 kb on - strand, within BACOVA_02656

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C)
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53,433 + BACOVA_02653 0.51 +2.2
53,433 + BACOVA_02653 0.51 +0.0
53,438 + BACOVA_02653 0.51 -0.5
53,481 + BACOVA_02653 0.54 +0.1
53,481 + BACOVA_02653 0.54 -0.5
53,505 + BACOVA_02653 0.56 +0.1
53,537 + BACOVA_02653 0.58 -0.0
53,543 - BACOVA_02653 0.58 +0.2
53,550 + BACOVA_02653 0.59 -1.3
53,611 - BACOVA_02653 0.63 -1.4
53,745 + BACOVA_02653 0.72 -0.6
53,771 + BACOVA_02653 0.73 -0.1
53,772 - BACOVA_02653 0.73 +0.4
53,779 + BACOVA_02653 0.74 +1.3
53,780 - BACOVA_02653 0.74 +1.7
53,784 + BACOVA_02653 0.74 +0.3
53,784 + BACOVA_02653 0.74 +0.3
53,785 - BACOVA_02653 0.74 -0.6
53,785 - BACOVA_02653 0.74 +0.6
53,789 - BACOVA_02653 0.75 -1.0
53,800 + BACOVA_02653 0.75 -0.1
53,800 + BACOVA_02653 0.75 +0.6
53,811 + BACOVA_02653 0.76 +1.2
53,868 + BACOVA_02653 0.80 -0.4
53,869 - BACOVA_02653 0.80 +0.8
53,882 - BACOVA_02653 0.81 +0.4
53,889 + BACOVA_02653 0.81 +1.3
53,893 + BACOVA_02653 0.82 -0.1
53,893 + BACOVA_02653 0.82 +0.7
53,894 - BACOVA_02653 0.82 +0.2
53,894 - BACOVA_02653 0.82 +1.0
53,897 + BACOVA_02653 0.82 -0.6
53,919 + BACOVA_02653 0.83 +0.2
53,931 + BACOVA_02653 0.84 +0.7
53,949 + BACOVA_02653 0.85 -0.3
53,950 - BACOVA_02653 0.85 -0.4
53,950 - BACOVA_02653 0.85 -1.6
53,950 - BACOVA_02653 0.85 -0.9
53,955 + BACOVA_02653 0.86 -0.4
53,977 + BACOVA_02653 0.87 -0.9
54,021 + +0.5
54,022 - +0.0
54,079 + +1.7
54,079 + +1.7
54,079 + +0.5
54,081 + -0.3
54,108 + +1.1
54,109 - +0.1
54,109 - +0.1
54,109 - +1.2
54,112 + +1.6
54,112 + +1.4
54,113 - -0.2
54,124 - +0.2
54,127 - +0.4
54,139 - +0.3
54,153 + -0.0
54,180 - +0.6
54,182 - +0.3
54,188 - +0.1
54,199 - +1.3
54,256 + +0.7
54,257 - +1.4
54,267 + -0.2
54,267 + -0.1
54,267 + +1.3
54,268 - +1.0
54,287 + -0.6
54,295 + +1.1
54,334 + -1.4
54,476 + -0.8
54,510 + BACOVA_02654 0.10 +0.7
54,510 + BACOVA_02654 0.10 +0.4
54,511 - BACOVA_02654 0.11 +0.9
54,512 + BACOVA_02654 0.11 -0.1
54,513 - BACOVA_02654 0.11 +1.2
54,513 - BACOVA_02654 0.11 +0.7
54,527 - BACOVA_02654 0.12 +0.1
54,540 + BACOVA_02654 0.12 +0.3
54,544 - BACOVA_02654 0.13 +0.6
54,681 - BACOVA_02654 0.21 +1.4
54,871 + BACOVA_02654 0.33 +0.1
54,937 + BACOVA_02654 0.38 +0.7
54,938 - BACOVA_02654 0.38 +0.9
54,986 - BACOVA_02654 0.41 +0.2
55,105 + BACOVA_02654 0.48 -1.1
55,106 - BACOVA_02654 0.48 +1.0
55,323 + BACOVA_02654 0.62 -0.1
55,326 + BACOVA_02654 0.62 +0.0
55,327 - BACOVA_02654 0.62 +1.2
55,342 + BACOVA_02654 0.63 -1.8
55,365 + BACOVA_02654 0.65 -0.4
55,389 - BACOVA_02654 0.66 +0.4
55,449 + BACOVA_02654 0.70 +1.4
55,462 + BACOVA_02654 0.71 +1.4
55,562 - BACOVA_02654 0.77 +0.2
55,564 + BACOVA_02654 0.77 -2.0
55,565 - BACOVA_02654 0.77 -0.6
55,565 - BACOVA_02654 0.77 +0.4
55,565 - BACOVA_02654 0.77 -0.3
55,597 + BACOVA_02654 0.79 -0.6
55,598 - BACOVA_02654 0.79 -0.6
55,604 - BACOVA_02654 0.80 +0.5
55,604 - BACOVA_02654 0.80 +0.8
55,611 + BACOVA_02654 0.80 +0.7
55,612 - BACOVA_02654 0.80 +0.2
55,629 + BACOVA_02654 0.81 -0.1
55,629 + BACOVA_02654 0.81 -0.1
55,640 - BACOVA_02654 0.82 +1.1
55,672 + BACOVA_02654 0.84 +2.0
55,713 - BACOVA_02654 0.87 -0.5
55,713 - BACOVA_02654 0.87 +0.2
55,767 + -0.8
55,791 + +0.9
55,791 + -0.1
55,791 + -0.6
55,792 - +0.8
55,792 - +0.2
55,792 - -0.6
55,852 + -0.6
55,927 + -1.3
55,929 + -0.5
55,931 + -0.2
55,944 - -0.2
56,034 + BACOVA_02655 0.88 +0.9
56,094 + -0.1
56,166 + -0.4
56,166 + -1.0
56,166 + -1.7
56,167 - +1.3
56,167 - +1.3
56,170 + +0.4
56,171 - +0.1
56,171 - +0.9
56,171 - +1.3
56,171 - +1.0
56,175 - +1.0
56,176 + +0.8
56,176 + -0.4
56,177 - +1.1
56,177 - +0.8
56,177 - +1.7
56,181 - -1.2
56,189 - +0.1
56,242 + BACOVA_02656 0.10 +1.2
56,265 - BACOVA_02656 0.12 +1.5
56,275 + BACOVA_02656 0.12 -0.7
56,276 - BACOVA_02656 0.13 +1.6
56,276 - BACOVA_02656 0.13 +1.2
56,277 + BACOVA_02656 0.13 +0.2
56,277 + BACOVA_02656 0.13 -0.9
56,303 + BACOVA_02656 0.14 -1.0
56,421 + BACOVA_02656 0.22 -0.1
56,641 + BACOVA_02656 0.38 -0.8
56,733 + BACOVA_02656 0.44 -0.7
56,733 + BACOVA_02656 0.44 -0.6
56,733 + BACOVA_02656 0.44 -0.1
56,734 - BACOVA_02656 0.44 +0.0
56,767 + BACOVA_02656 0.46 -0.1
56,801 + BACOVA_02656 0.48 +0.3
56,801 + BACOVA_02656 0.48 -0.6
56,801 + BACOVA_02656 0.48 -0.1
56,850 - BACOVA_02656 0.52 +1.0
56,910 - BACOVA_02656 0.56 +0.0

Or see this region's nucleotide sequence