Experiment: Glucomannan (konjac) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00435 and BACOVA_00436 are separated by 130 nucleotides BACOVA_00436 and BACOVA_00437 are separated by 215 nucleotides BACOVA_00437 and BACOVA_00438 are separated by 27 nucleotides BACOVA_00438 and BACOVA_00439 are separated by 41 nucleotides BACOVA_00439 and BACOVA_00440 are separated by 175 nucleotides BACOVA_00440 and BACOVA_00441 are separated by 87 nucleotides
BACOVA_00435: BACOVA_00435 - sigma factor regulatory protein, FecR/PupR family, at 16,290 to 17,489
_00435
BACOVA_00436: BACOVA_00436 - sigma-70, region 4, at 17,620 to 18,207
_00436
BACOVA_00437: BACOVA_00437 - hypothetical protein, at 18,423 to 18,557
_00437
BACOVA_00438: BACOVA_00438 - hypothetical protein, at 18,585 to 18,701
_00438
BACOVA_00439: BACOVA_00439 - hypothetical protein, at 18,743 to 18,856
_00439
BACOVA_00440: BACOVA_00440 - hypothetical protein, at 19,032 to 19,184
_00440
BACOVA_00441: BACOVA_00441 - hypothetical protein, at 19,272 to 19,436
_00441
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.464 kb on - strand at 17.471 kb on + strand at 17.471 kb on + strand at 17.471 kb on + strand at 17.472 kb on - strand at 17.499 kb on + strand at 17.506 kb on + strand at 17.532 kb on + strand at 17.534 kb on + strand at 17.596 kb on - strand at 17.600 kb on + strand at 17.600 kb on + strand at 17.600 kb on + strand at 17.603 kb on - strand at 17.614 kb on - strand at 17.616 kb on - strand at 17.621 kb on + strand at 17.637 kb on + strand at 17.641 kb on - strand at 17.656 kb on - strand at 17.702 kb on - strand, within BACOVA_00436 at 17.721 kb on + strand, within BACOVA_00436 at 17.734 kb on + strand, within BACOVA_00436 at 17.780 kb on + strand, within BACOVA_00436 at 17.780 kb on + strand, within BACOVA_00436 at 17.781 kb on - strand, within BACOVA_00436 at 17.819 kb on - strand, within BACOVA_00436 at 17.821 kb on - strand, within BACOVA_00436 at 17.821 kb on - strand, within BACOVA_00436 at 17.881 kb on - strand, within BACOVA_00436 at 17.881 kb on - strand, within BACOVA_00436 at 17.881 kb on - strand, within BACOVA_00436 at 17.966 kb on - strand, within BACOVA_00436 at 18.027 kb on - strand, within BACOVA_00436 at 18.062 kb on - strand, within BACOVA_00436 at 18.062 kb on - strand, within BACOVA_00436 at 18.095 kb on + strand, within BACOVA_00436 at 18.095 kb on + strand, within BACOVA_00436 at 18.096 kb on - strand, within BACOVA_00436 at 18.103 kb on + strand, within BACOVA_00436 at 18.118 kb on + strand, within BACOVA_00436 at 18.119 kb on - strand, within BACOVA_00436 at 18.172 kb on + strand at 18.173 kb on - strand at 18.173 kb on - strand at 18.179 kb on - strand at 18.218 kb on + strand at 18.219 kb on - strand at 18.240 kb on + strand at 18.241 kb on - strand at 18.300 kb on - strand at 18.310 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.327 kb on - strand at 18.327 kb on - strand at 18.329 kb on - strand at 18.351 kb on + strand at 18.351 kb on + strand at 18.390 kb on - strand at 18.390 kb on - strand at 18.427 kb on + strand at 18.449 kb on + strand, within BACOVA_00437 at 18.449 kb on + strand, within BACOVA_00437 at 18.449 kb on + strand, within BACOVA_00437 at 18.450 kb on - strand, within BACOVA_00437 at 18.450 kb on - strand, within BACOVA_00437 at 18.450 kb on - strand, within BACOVA_00437 at 18.457 kb on - strand, within BACOVA_00437 at 18.473 kb on + strand, within BACOVA_00437 at 18.474 kb on - strand, within BACOVA_00437 at 18.475 kb on - strand, within BACOVA_00437 at 18.489 kb on - strand, within BACOVA_00437 at 18.604 kb on + strand, within BACOVA_00438 at 18.680 kb on - strand, within BACOVA_00438 at 18.699 kb on + strand at 18.707 kb on + strand at 18.707 kb on + strand at 18.767 kb on + strand, within BACOVA_00439 at 18.768 kb on - strand, within BACOVA_00439 at 18.869 kb on - strand at 18.933 kb on + strand at 18.933 kb on + strand at 18.933 kb on + strand at 18.934 kb on - strand at 18.960 kb on + strand at 18.980 kb on + strand at 18.980 kb on + strand at 18.981 kb on - strand at 19.086 kb on - strand, within BACOVA_00440 at 19.103 kb on + strand, within BACOVA_00440 at 19.108 kb on + strand, within BACOVA_00440 at 19.111 kb on + strand, within BACOVA_00440 at 19.112 kb on - strand, within BACOVA_00440 at 19.116 kb on - strand, within BACOVA_00440 at 19.116 kb on - strand, within BACOVA_00440 at 19.183 kb on - strand at 19.253 kb on + strand at 19.271 kb on + strand at 19.271 kb on + strand at 19.313 kb on - strand, within BACOVA_00441 at 19.435 kb on - strand at 19.435 kb on - strand at 19.482 kb on - strand at 19.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/mL (C) remove 17,464 - -0.9 17,471 + +0.5 17,471 + +1.0 17,471 + +0.4 17,472 - +1.2 17,499 + +1.2 17,506 + +0.7 17,532 + +0.4 17,534 + -0.5 17,596 - -0.2 17,600 + -2.1 17,600 + -2.0 17,600 + -0.4 17,603 - +1.1 17,614 - -0.3 17,616 - -1.2 17,621 + -2.2 17,637 + -0.3 17,641 - +0.2 17,656 - -1.5 17,702 - BACOVA_00436 0.14 -0.8 17,721 + BACOVA_00436 0.17 -2.3 17,734 + BACOVA_00436 0.19 +0.2 17,780 + BACOVA_00436 0.27 -1.4 17,780 + BACOVA_00436 0.27 -0.7 17,781 - BACOVA_00436 0.27 +1.2 17,819 - BACOVA_00436 0.34 -1.2 17,821 - BACOVA_00436 0.34 -3.1 17,821 - BACOVA_00436 0.34 -0.2 17,881 - BACOVA_00436 0.44 -0.4 17,881 - BACOVA_00436 0.44 -0.3 17,881 - BACOVA_00436 0.44 +0.5 17,966 - BACOVA_00436 0.59 +1.0 18,027 - BACOVA_00436 0.69 +0.3 18,062 - BACOVA_00436 0.75 +0.5 18,062 - BACOVA_00436 0.75 -0.6 18,095 + BACOVA_00436 0.81 +0.3 18,095 + BACOVA_00436 0.81 +1.6 18,096 - BACOVA_00436 0.81 -0.2 18,103 + BACOVA_00436 0.82 -0.6 18,118 + BACOVA_00436 0.85 +1.0 18,119 - BACOVA_00436 0.85 +0.1 18,172 + +0.2 18,173 - -1.1 18,173 - -0.8 18,179 - -0.5 18,218 + -0.9 18,219 - +1.0 18,240 + +0.8 18,241 - +0.0 18,300 - -0.3 18,310 + +1.0 18,326 + -0.3 18,326 + +0.1 18,327 - -0.2 18,327 - -0.4 18,329 - -0.5 18,351 + +1.2 18,351 + -1.7 18,390 - +0.0 18,390 - -0.0 18,427 + -0.2 18,449 + BACOVA_00437 0.19 +0.9 18,449 + BACOVA_00437 0.19 +0.2 18,449 + BACOVA_00437 0.19 +1.0 18,450 - BACOVA_00437 0.20 +0.4 18,450 - BACOVA_00437 0.20 +0.3 18,450 - BACOVA_00437 0.20 +0.8 18,457 - BACOVA_00437 0.25 +0.0 18,473 + BACOVA_00437 0.37 +0.6 18,474 - BACOVA_00437 0.38 +0.6 18,475 - BACOVA_00437 0.39 -1.9 18,489 - BACOVA_00437 0.49 +1.9 18,604 + BACOVA_00438 0.16 -0.1 18,680 - BACOVA_00438 0.81 -1.3 18,699 + +0.3 18,707 + -0.0 18,707 + +0.4 18,767 + BACOVA_00439 0.21 +0.0 18,768 - BACOVA_00439 0.22 -1.3 18,869 - +0.7 18,933 + -0.9 18,933 + +1.2 18,933 + +1.0 18,934 - +0.8 18,960 + +1.4 18,980 + +0.6 18,980 + -0.8 18,981 - +0.6 19,086 - BACOVA_00440 0.35 +0.7 19,103 + BACOVA_00440 0.46 -0.7 19,108 + BACOVA_00440 0.50 -0.7 19,111 + BACOVA_00440 0.52 -0.7 19,112 - BACOVA_00440 0.52 +0.4 19,116 - BACOVA_00440 0.55 +0.4 19,116 - BACOVA_00440 0.55 +0.0 19,183 - +0.6 19,253 + -0.3 19,271 + -0.5 19,271 + -0.4 19,313 - BACOVA_00441 0.25 +0.4 19,435 - +0.7 19,435 - -1.4 19,482 - -0.6 19,518 - -1.5
Or see this region's nucleotide sequence