Strain Fitness in Escherichia fergusonii Becca around EFB2_03539

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,694,687	+				-1.2
3,694,687	+				-2.4
3,694,687	+				+1.1
3,694,687	+				-1.2
3,694,687	+				-1.4
3,694,687	+				-0.3
3,694,687	+				-1.9
3,694,688	-				+1.5
3,694,741	+				+0.5
3,694,741	+				+0.7
3,694,741	+				+0.8
3,694,753	+				+0.4
3,694,753	+				-0.2
3,694,753	+				+0.4
3,694,753	+				-0.4
3,694,754	-				-0.6
3,694,754	-				+0.8
3,694,754	-				+1.4
3,694,754	-				-1.8
3,694,754	-				+0.1
3,694,755	+				-2.8
3,694,755	+				+0.0
3,694,756	-				-1.3
3,694,778	+				+0.6
3,694,779	-				+1.6
3,694,779	-				+1.1
3,694,781	+				-0.6
3,694,781	+				+1.9
3,694,781	+				-1.1
3,694,782	-				-0.8
3,694,782	-				-2.9
3,694,797	+				+1.1
3,694,797	+				-0.1
3,694,797	+				-2.9
3,694,797	+				+1.1
3,694,798	-				+0.7
3,694,798	-				+0.0
3,694,798	-				-1.1
3,694,810	+				-3.2
3,694,810	+				+0.0
3,694,810	+				+0.3
3,694,810	+				-3.0
3,694,811	-				+0.4
3,694,811	-				-1.0
3,694,811	-				-1.6
3,694,813	+				+1.5
3,694,813	+				+0.9
3,694,813	+				-0.8
3,694,813	+				-1.9
3,694,813	+				+0.5
3,694,814	-				-0.0
3,694,814	-				-0.2
3,694,814	-				+1.5
3,694,814	-				+1.8
3,694,814	-				+0.5
3,694,814	-				-2.1
3,694,814	-				+1.0
3,694,816	+				+1.6
3,694,816	+				-2.7
3,694,816	+				-0.2
3,694,817	-				-0.1
3,694,817	-				-1.0
3,694,817	-				-1.9
3,694,817	-				-0.8
3,694,879	+		EFB2_03538	0.19	+0.7
3,694,879	+		EFB2_03538	0.19	+0.6
3,694,879	+		EFB2_03538	0.19	-0.7
3,694,879	+		EFB2_03538	0.19	-1.7
3,694,880	-		EFB2_03538	0.19	+0.5
3,694,880	-		EFB2_03538	0.19	+0.1
3,694,880	-		EFB2_03538	0.19	-1.4
3,694,880	-		EFB2_03538	0.19	-4.0
3,694,880	-		EFB2_03538	0.19	+0.6
3,694,880	-		EFB2_03538	0.19	+0.2
3,694,880	-		EFB2_03538	0.19	+0.4
3,694,880	-		EFB2_03538	0.19	-1.8
3,694,880	-		EFB2_03538	0.19	+0.1
3,694,882	+		EFB2_03538	0.20	+1.0
3,694,882	+		EFB2_03538	0.20	-0.8
3,694,882	+		EFB2_03538	0.20	+0.9
3,694,882	+		EFB2_03538	0.20	+1.0
3,694,882	+		EFB2_03538	0.20	-0.3
3,694,883	-		EFB2_03538	0.20	-0.2
3,694,883	-		EFB2_03538	0.20	+0.8
3,694,883	-		EFB2_03538	0.20	+0.2
3,694,907	+		EFB2_03538	0.27	-0.9
3,694,907	+		EFB2_03538	0.27	-0.5
3,694,907	+		EFB2_03538	0.27	-1.8
3,694,907	+		EFB2_03538	0.27	-2.3
3,694,908	-		EFB2_03538	0.28	-1.7
3,694,908	-		EFB2_03538	0.28	-0.9
3,694,929	+		EFB2_03538	0.34	-0.5
3,694,929	+		EFB2_03538	0.34	+1.2
3,694,929	+		EFB2_03538	0.34	-0.5
3,694,930	-		EFB2_03538	0.34	-1.1
3,694,930	-		EFB2_03538	0.34	+0.1
3,694,930	-		EFB2_03538	0.34	-0.6
3,694,930	-		EFB2_03538	0.34	+0.2
3,694,930	-		EFB2_03538	0.34	-0.8
3,694,953	+		EFB2_03538	0.41	+2.3
3,694,954	-		EFB2_03538	0.42	+0.9
3,694,954	-		EFB2_03538	0.42	+0.1
3,694,954	-		EFB2_03538	0.42	+0.2
3,694,954	-		EFB2_03538	0.42	-1.1
3,694,958	+		EFB2_03538	0.43	-0.9
3,694,958	+		EFB2_03538	0.43	+0.5
3,694,958	+		EFB2_03538	0.43	+0.9
3,694,959	-		EFB2_03538	0.43	-3.7
3,694,973	+		EFB2_03538	0.47	-1.0
3,694,973	+		EFB2_03538	0.47	+1.8
3,694,973	+		EFB2_03538	0.47	-0.8
3,694,973	+		EFB2_03538	0.47	+1.2
3,694,974	-		EFB2_03538	0.48	+1.4
3,694,974	-		EFB2_03538	0.48	+2.4
3,694,974	-		EFB2_03538	0.48	+0.5
3,694,974	-		EFB2_03538	0.48	-0.4
3,694,974	-		EFB2_03538	0.48	-0.6
3,694,974	-		EFB2_03538	0.48	-2.1
3,694,977	+		EFB2_03538	0.48	+0.1
3,694,977	+		EFB2_03538	0.48	+2.7
3,694,978	-		EFB2_03538	0.49	-1.0
3,694,978	-		EFB2_03538	0.49	-2.4
3,694,978	-		EFB2_03538	0.49	-2.4
3,694,978	-		EFB2_03538	0.49	+1.6
3,694,980	+		EFB2_03538	0.49	+0.9
3,694,981	-		EFB2_03538	0.50	+0.7
3,694,981	-		EFB2_03538	0.50	-0.8
3,694,981	-		EFB2_03538	0.50	+0.0
3,694,997	-		EFB2_03538	0.55	-1.2
3,695,010	+		EFB2_03538	0.58	+0.3
3,695,020	+		EFB2_03538	0.62	+0.3
3,695,020	+		EFB2_03538	0.62	+0.1
3,695,020	+		EFB2_03538	0.62	-1.8
3,695,020	+		EFB2_03538	0.62	+1.2
3,695,020	+		EFB2_03538	0.62	+1.8
3,695,021	-		EFB2_03538	0.62	-0.9
3,695,021	-		EFB2_03538	0.62	-1.9
3,695,021	-		EFB2_03538	0.62	-0.3
3,695,021	-		EFB2_03538	0.62	+0.8
3,695,021	-		EFB2_03538	0.62	-0.3
3,695,021	-		EFB2_03538	0.62	-1.4
3,695,021	-		EFB2_03538	0.62	-0.0
3,695,021	-		EFB2_03538	0.62	+1.1
3,695,022	+		EFB2_03538	0.62	+1.5
3,695,022	+		EFB2_03538	0.62	-3.8
3,695,022	+		EFB2_03538	0.62	-2.0
3,695,022	+		EFB2_03538	0.62	-1.7
3,695,022	+		EFB2_03538	0.62	+0.2
3,695,022	+		EFB2_03538	0.62	+0.7
3,695,023	-		EFB2_03538	0.62	-0.9
3,695,023	-		EFB2_03538	0.62	+0.1
3,695,023	-		EFB2_03538	0.62	+0.9
3,695,023	-		EFB2_03538	0.62	+3.8
3,695,023	-		EFB2_03538	0.62	+0.2
3,695,023	-		EFB2_03538	0.62	-0.0
3,695,035	+		EFB2_03538	0.66	-0.2
3,695,036	-		EFB2_03538	0.66	+0.3
3,695,036	-		EFB2_03538	0.66	+0.8
3,695,067	+		EFB2_03538	0.76	+1.0
3,695,068	-		EFB2_03538	0.76	-1.0
3,695,068	-		EFB2_03538	0.76	+1.4
3,695,187	+				+0.6
3,695,188	-				-3.6
3,695,188	-				-0.5
3,695,188	-				-0.4
3,695,188	-				-2.7
3,695,188	-				+1.0
3,695,204	-				+1.0
3,695,234	+				+0.8
3,695,234	+				+0.8
3,695,235	-				+0.3
3,695,235	-				+1.6
3,695,256	+				+2.8
3,695,257	-				-0.8
3,695,304	+		EFB2_03539	0.12	+1.0
3,695,389	-		EFB2_03539	0.29	+0.8
3,695,439	+		EFB2_03539	0.39	+0.0
3,695,440	-		EFB2_03539	0.39	+1.2
3,695,520	-		EFB2_03539	0.55	-1.5
3,695,520	-		EFB2_03539	0.55	-3.1
3,695,520	-		EFB2_03539	0.55	+0.5
3,695,554	+		EFB2_03539	0.61	+1.0
3,695,555	-		EFB2_03539	0.61	+1.1
3,695,555	-		EFB2_03539	0.61	+3.7
3,695,564	+		EFB2_03539	0.63	-1.6
3,695,564	+		EFB2_03539	0.63	+0.4
3,695,564	+		EFB2_03539	0.63	-1.2
3,695,564	+		EFB2_03539	0.63	+0.3
3,695,565	-		EFB2_03539	0.63	-1.7
3,695,565	-		EFB2_03539	0.63	+0.0
3,695,565	-		EFB2_03539	0.63	-0.2
3,695,565	-		EFB2_03539	0.63	-2.7
3,695,592	+		EFB2_03539	0.69	-1.2
3,695,592	+		EFB2_03539	0.69	+0.0
3,695,607	+		EFB2_03539	0.72	+0.5
3,695,782	+				-0.2
3,695,783	-				-0.5
3,695,783	-				+2.5
3,695,783	-				+1.2
3,695,783	-				+0.5
3,695,783	-				-0.0
3,695,789	+				-1.3
3,695,790	-				+0.2
3,695,794	+				-0.1
3,695,794	+				-0.4
3,695,794	+				+0.7
3,695,794	+				-0.4
3,695,794	+				-0.2
3,695,794	+				-0.8
3,695,794	+				+0.3
3,695,794	+				+0.5
3,695,794	+				+0.4
3,695,794	+				+0.5
3,695,794	+				+0.5
3,695,794	+				-0.3
3,695,794	+				-1.7
3,695,794	+				-2.1
3,695,794	+				-0.4
3,695,794	+				+1.6
3,695,795	-				+0.3
3,695,795	-				-2.0
3,695,795	-				+0.2
3,695,795	-				-1.6
3,695,795	-				+1.2
3,695,795	-				+0.3
3,695,795	-				-0.1
3,695,795	-				+0.6
3,695,795	-				-3.5
3,695,795	-				-0.3
3,695,795	-				-1.7
3,695,795	-				+0.8
3,695,795	-				-0.8
3,695,975	+		EFB2_03540	0.21	-2.6
3,696,043	+		EFB2_03540	0.28	-2.8
3,696,043	+		EFB2_03540	0.28	-1.3
3,696,043	+		EFB2_03540	0.28	-0.1
3,696,043	+		EFB2_03540	0.28	-0.5
3,696,043	+		EFB2_03540	0.28	-1.3
3,696,043	+		EFB2_03540	0.28	-0.6
3,696,043	+		EFB2_03540	0.28	+2.7
3,696,043	+		EFB2_03540	0.28	-0.6
3,696,043	+		EFB2_03540	0.28	-1.0
3,696,043	+		EFB2_03540	0.28	+0.7
3,696,043	+		EFB2_03540	0.28	-1.2
3,696,044	-		EFB2_03540	0.28	-0.6
3,696,044	-		EFB2_03540	0.28	+1.2
3,696,044	-		EFB2_03540	0.28	+1.9
3,696,044	-		EFB2_03540	0.28	-1.6
3,696,044	-		EFB2_03540	0.28	-2.4
3,696,044	-		EFB2_03540	0.28	-3.3
3,696,044	-		EFB2_03540	0.28	-1.4
3,696,044	-		EFB2_03540	0.28	-1.7
3,696,085	+		EFB2_03540	0.32	+0.2
3,696,085	+		EFB2_03540	0.32	-0.7
3,696,085	+		EFB2_03540	0.32	+0.4
3,696,085	+		EFB2_03540	0.32	+0.8
3,696,086	-		EFB2_03540	0.32	+0.7
3,696,104	+		EFB2_03540	0.33	+1.3
3,696,124	-		EFB2_03540	0.35	+1.0
3,696,172	+		EFB2_03540	0.40	-1.0
3,696,173	-		EFB2_03540	0.40	-2.4
3,696,173	-		EFB2_03540	0.40	-1.3
3,696,187	-		EFB2_03540	0.41	-1.4
3,696,197	+		EFB2_03540	0.42	+0.5
3,696,197	+		EFB2_03540	0.42	-0.7
3,696,197	+		EFB2_03540	0.42	+1.9
3,696,197	+		EFB2_03540	0.42	+0.6
3,696,197	+		EFB2_03540	0.42	+1.6
3,696,197	+		EFB2_03540	0.42	-1.0
3,696,197	+		EFB2_03540	0.42	+1.4
3,696,198	-		EFB2_03540	0.42	+0.4
3,696,198	-		EFB2_03540	0.42	-2.7
3,696,198	-		EFB2_03540	0.42	-2.4
3,696,198	-		EFB2_03540	0.42	-3.1
3,696,214	+		EFB2_03540	0.44	-0.2
3,696,214	+		EFB2_03540	0.44	-1.2
3,696,215	-		EFB2_03540	0.44	+2.4
3,696,276	+		EFB2_03540	0.49	-2.0
3,696,290	+		EFB2_03540	0.51	-1.2
3,696,290	+		EFB2_03540	0.51	+0.7
3,696,387	-		EFB2_03540	0.60	-1.7
3,696,387	-		EFB2_03540	0.60	-2.3
3,696,387	-		EFB2_03540	0.60	-0.4
3,696,387	-		EFB2_03540	0.60	-0.4
3,696,402	+		EFB2_03540	0.61	+1.2
3,696,402	+		EFB2_03540	0.61	-2.5
3,696,402	+		EFB2_03540	0.61	-1.2
3,696,402	+		EFB2_03540	0.61	-1.8
3,696,402	+		EFB2_03540	0.61	+1.1
3,696,402	+		EFB2_03540	0.61	+0.3
3,696,402	+		EFB2_03540	0.61	+0.3
3,696,402	+		EFB2_03540	0.61	-2.3
3,696,402	+		EFB2_03540	0.61	+0.3
3,696,402	+		EFB2_03540	0.61	-1.2
3,696,402	+		EFB2_03540	0.61	-2.8
3,696,402	+		EFB2_03540	0.61	-2.1
3,696,402	+		EFB2_03540	0.61	-1.0
3,696,402	+		EFB2_03540	0.61	-1.4
3,696,402	+		EFB2_03540	0.61	+1.0
3,696,402	+		EFB2_03540	0.61	+1.6
3,696,402	+		EFB2_03540	0.61	-0.7
3,696,402	+		EFB2_03540	0.61	-0.5
3,696,402	+		EFB2_03540	0.61	-3.5
3,696,402	+		EFB2_03540	0.61	+0.2
3,696,402	+		EFB2_03540	0.61	-0.3
3,696,402	+		EFB2_03540	0.61	+2.1
3,696,402	+		EFB2_03540	0.61	+0.8
3,696,402	+		EFB2_03540	0.61	+1.7
3,696,402	+		EFB2_03540	0.61	-1.1
3,696,402	+		EFB2_03540	0.61	+0.7
3,696,402	+		EFB2_03540	0.61	-0.5
3,696,402	+		EFB2_03540	0.61	+1.4
3,696,402	+		EFB2_03540	0.61	-0.6
3,696,402	+		EFB2_03540	0.61	+0.1
3,696,402	+		EFB2_03540	0.61	-0.3
3,696,402	+		EFB2_03540	0.61	-0.2
3,696,402	+		EFB2_03540	0.61	+0.1
3,696,402	+		EFB2_03540	0.61	+1.7
3,696,402	+		EFB2_03540	0.61	+2.0
3,696,402	+		EFB2_03540	0.61	+0.6
3,696,403	-		EFB2_03540	0.61	-2.2
3,696,403	-		EFB2_03540	0.61	+0.7
3,696,403	-		EFB2_03540	0.61	-1.9
3,696,403	-		EFB2_03540	0.61	+1.5
3,696,403	-		EFB2_03540	0.61	-0.6
3,696,403	-		EFB2_03540	0.61	-1.1
3,696,403	-		EFB2_03540	0.61	-0.4
3,696,403	-		EFB2_03540	0.61	-0.6
3,696,403	-		EFB2_03540	0.61	-0.2
3,696,403	-		EFB2_03540	0.61	+1.0
3,696,403	-		EFB2_03540	0.61	+1.6
3,696,403	-		EFB2_03540	0.61	-0.3
3,696,403	-		EFB2_03540	0.61	+2.3
3,696,403	-		EFB2_03540	0.61	+0.0
3,696,403	-		EFB2_03540	0.61	+1.1
3,696,403	-		EFB2_03540	0.61	-0.7
3,696,403	-		EFB2_03540	0.61	+1.2
3,696,403	-		EFB2_03540	0.61	-1.0
3,696,403	-		EFB2_03540	0.61	+1.4
3,696,403	-		EFB2_03540	0.61	-2.3
3,696,403	-		EFB2_03540	0.61	-1.4
3,696,403	-		EFB2_03540	0.61	+1.9
3,696,403	-		EFB2_03540	0.61	-2.4
3,696,403	-		EFB2_03540	0.61	+0.8
3,696,403	-		EFB2_03540	0.61	+1.8
3,696,403	-		EFB2_03540	0.61	-0.6
3,696,403	-		EFB2_03540	0.61	-0.1
3,696,403	-		EFB2_03540	0.61	-1.0
3,696,406	+		EFB2_03540	0.62	-1.4
3,696,406	+		EFB2_03540	0.62	+1.4
3,696,406	+		EFB2_03540	0.62	+0.4
3,696,406	+		EFB2_03540	0.62	-0.5
3,696,406	+		EFB2_03540	0.62	-1.2
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3,696,667	+		EFB2_03540	0.86	+0.7
3,696,751	+				+0.3
3,696,751	+				-0.6