Strain Fitness in Escherichia fergusonii Becca around EFB2_02564

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,699,027	-		EFB2_02563	0.47	-1.7
2,699,174	+		EFB2_02563	0.57	+1.3
2,699,174	+		EFB2_02563	0.57	-2.4
2,699,174	+		EFB2_02563	0.57	-1.6
2,699,175	-		EFB2_02563	0.57	+1.9
2,699,175	-		EFB2_02563	0.57	-0.3
2,699,175	-		EFB2_02563	0.57	-0.4
2,699,175	-		EFB2_02563	0.57	-0.2
2,699,175	-		EFB2_02563	0.57	-0.4
2,699,204	+		EFB2_02563	0.59	+0.7
2,699,204	+		EFB2_02563	0.59	-1.4
2,699,263	+		EFB2_02563	0.63	-1.3
2,699,264	-		EFB2_02563	0.64	-1.9
2,699,275	+		EFB2_02563	0.64	-1.1
2,699,275	+		EFB2_02563	0.64	-0.7
2,699,276	-		EFB2_02563	0.64	+0.6
2,699,276	-		EFB2_02563	0.64	+0.4
2,699,276	-		EFB2_02563	0.64	+0.3
2,699,350	+		EFB2_02563	0.70	+1.4
2,699,351	-		EFB2_02563	0.70	-1.4
2,699,383	+		EFB2_02563	0.72	+1.0
2,699,425	-		EFB2_02563	0.75	-0.9
2,699,446	+		EFB2_02563	0.76	+1.3
2,699,446	+		EFB2_02563	0.76	-1.6
2,699,446	+		EFB2_02563	0.76	-2.0
2,699,447	-		EFB2_02563	0.76	-3.7
2,699,447	-		EFB2_02563	0.76	+2.1
2,699,447	-		EFB2_02563	0.76	+1.8
2,699,448	+		EFB2_02563	0.76	+0.3
2,699,448	+		EFB2_02563	0.76	-0.7
2,699,448	+		EFB2_02563	0.76	+1.0
2,699,448	+		EFB2_02563	0.76	-1.4
2,699,448	+		EFB2_02563	0.76	+0.3
2,699,449	-		EFB2_02563	0.76	-1.4
2,699,449	-		EFB2_02563	0.76	+1.9
2,699,449	-		EFB2_02563	0.76	-1.3
2,699,449	-		EFB2_02563	0.76	-1.1
2,699,449	-		EFB2_02563	0.76	-2.3
2,699,449	-		EFB2_02563	0.76	+0.9
2,699,449	-		EFB2_02563	0.76	+0.7
2,699,449	-		EFB2_02563	0.76	+1.4
2,699,449	-		EFB2_02563	0.76	-1.3
2,699,455	+		EFB2_02563	0.77	-1.7
2,699,456	-		EFB2_02563	0.77	+2.5
2,699,457	+		EFB2_02563	0.77	+1.8
2,699,457	+		EFB2_02563	0.77	-0.2
2,699,457	+		EFB2_02563	0.77	-1.8
2,699,457	+		EFB2_02563	0.77	+0.6
2,699,457	+		EFB2_02563	0.77	+1.6
2,699,457	+		EFB2_02563	0.77	-0.7
2,699,457	+		EFB2_02563	0.77	-1.3
2,699,457	+		EFB2_02563	0.77	+1.3
2,699,458	-		EFB2_02563	0.77	-0.4
2,699,458	-		EFB2_02563	0.77	+1.0
2,699,458	-		EFB2_02563	0.77	-0.3
2,699,458	-		EFB2_02563	0.77	-1.2
2,699,458	-		EFB2_02563	0.77	+2.0
2,699,458	-		EFB2_02563	0.77	+3.8
2,699,458	-		EFB2_02563	0.77	+0.5
2,699,458	-		EFB2_02563	0.77	-2.2
2,699,458	-		EFB2_02563	0.77	-1.8
2,699,458	-		EFB2_02563	0.77	-2.7
2,699,593	+		EFB2_02563	0.86	-0.1
2,699,593	+		EFB2_02563	0.86	-0.6
2,699,594	-		EFB2_02563	0.86	-1.1
2,699,594	-		EFB2_02563	0.86	+1.8
2,699,648	-				-1.4
2,699,698	+				+1.3
2,699,699	-				+1.9
2,699,708	+				-1.4
2,699,709	-				+1.0
2,699,709	-				-1.8
2,699,740	+				-0.2
2,699,741	-				+0.3
2,699,759	-				+1.1
2,699,760	+				+0.5
2,699,760	+				-0.6
2,699,760	+				+0.7
2,699,760	+				-2.7
2,699,760	+				-2.4
2,699,760	+				+1.6
2,699,760	+				+0.7
2,699,760	+				-0.9
2,699,760	+				+0.1
2,699,760	+				+0.1
2,699,760	+				+1.7
2,699,760	+				-1.2
2,699,760	+				+1.7
2,699,760	+				+2.5
2,699,760	+				-0.7
2,699,760	+				-0.1
2,699,760	+				+0.3
2,699,760	+				+0.4
2,699,760	+				+0.2
2,699,760	+				+0.7
2,699,760	+				+3.3
2,699,760	+				+0.3
2,699,760	+				+2.7
2,699,760	+				+1.3
2,699,760	+				-1.6
2,699,761	-				+1.3
2,699,761	-				-0.5
2,699,761	-				+2.0
2,699,761	-				-0.3
2,699,761	-				-0.1
2,699,761	-				+2.1
2,699,761	-				+0.3
2,699,761	-				-0.4
2,699,761	-				+1.4
2,699,761	-				-0.8
2,699,761	-				-0.4
2,699,761	-				+0.5
2,699,761	-				+0.4
2,699,761	-				-1.4
2,699,761	-				+0.3
2,699,761	-				+0.9
2,699,761	-				-1.8
2,699,761	-				-0.6
2,699,761	-				-0.2
2,699,761	-				-1.9
2,699,761	-				-0.3
2,699,761	-				-2.7
2,699,761	-				+0.5
2,699,761	-				+1.7
2,699,761	-				+0.8
2,699,761	-				-0.1
2,699,764	+				-0.4
2,699,764	+				-1.6
2,699,764	+				-2.1
2,699,764	+				-2.4
2,699,764	+				+1.3
2,699,764	+				-1.3
2,699,764	+				+1.9
2,699,764	+				+0.7
2,699,764	+				-1.7
2,699,764	+				-0.1
2,699,764	+				+0.5
2,699,764	+				-0.5
2,699,764	+				+1.3
2,699,764	+				-1.6
2,699,764	+				-1.4
2,699,764	+				-2.4
2,699,764	+				-0.9
2,699,764	+				+0.4
2,699,764	+				+0.6
2,699,764	+				+1.6
2,699,764	+				+2.1
2,699,764	+				-0.7
2,699,764	+				+1.3
2,699,764	+				-1.7
2,699,764	+				-1.1
2,699,764	+				+0.1
2,699,764	+				-2.1
2,699,764	+				+0.8
2,699,764	+				+2.5
2,699,764	+				-0.1
2,699,764	+				-1.2
2,699,764	+				-2.2
2,699,764	+				-1.3
2,699,764	+				-2.0
2,699,764	+				-1.0
2,699,764	+				-1.1
2,699,764	+				-2.3
2,699,764	+				+0.3
2,699,764	+				+1.0
2,699,764	+				+1.3
2,699,764	+				+1.8
2,699,764	+				+0.9
2,699,764	+				-0.6
2,699,764	+				+0.5
2,699,764	+				-2.1
2,699,764	+				+0.2
2,699,764	+				+1.6
2,699,764	+				-1.1
2,699,764	+				-0.6
2,699,764	+				-0.7
2,699,764	+				-2.6
2,699,764	+				+2.0
2,699,764	+				+0.2
2,699,764	+				-0.4
2,699,764	+				+1.9
2,699,765	-				-0.0
2,699,765	-				-2.1
2,699,765	-				-0.4
2,699,765	-				-1.9
2,699,765	-				-0.1
2,699,765	-				+1.6
2,699,765	-				-2.1
2,699,765	-				+1.1
2,699,765	-				+2.3
2,699,765	-				+3.1
2,699,765	-				-2.0
2,699,765	-				-0.4
2,699,765	-				+1.7
2,699,765	-				+0.8
2,699,765	-				-2.4
2,699,765	-				-0.6
2,699,765	-				+0.3
2,699,765	-				-0.6
2,699,765	-				+0.2
2,699,765	-				+0.9
2,699,765	-				-2.4
2,699,765	-				+0.6
2,699,765	-				+0.6
2,699,765	-				-0.0
2,699,765	-				-0.3
2,699,765	-				+1.2
2,699,765	-				-2.2
2,699,765	-				-2.6
2,699,765	-				+1.8
2,699,765	-				-0.4
2,699,765	-				-0.6
2,699,765	-				+1.3
2,699,765	-				-1.1
2,699,765	-				-1.6
2,699,765	-				-0.1
2,699,765	-				+2.4
2,699,765	-				-2.7
2,699,765	-				+2.7
2,699,765	-				+0.8
2,699,765	-				+0.3
2,699,765	-				+2.4
2,699,765	-				-2.0
2,699,765	-				+0.4
2,699,765	-				-0.1
2,699,765	-				+0.5
2,699,836	-				-1.0
2,699,849	+				-1.7
2,699,850	-				-0.8
2,699,850	-				-0.6
2,699,850	-				-2.4
2,699,896	+				-1.4
2,699,908	+				+0.8
2,699,908	+				-0.7
2,699,908	+				-1.9
2,699,908	+				+0.9
2,699,908	+				+0.6
2,699,908	+				+1.5
2,699,908	+				-0.2
2,699,908	+				+0.5
2,699,909	-				-0.1
2,699,909	-				+2.3
2,699,918	+				-2.8
2,699,930	+				-0.6
2,699,991	+				-0.7
2,699,991	+				+1.3
2,699,991	+				-0.7
2,699,992	-				+0.5
2,699,992	-				+1.4
2,700,159	+		EFB2_02564	0.22	-0.7
2,700,159	+		EFB2_02564	0.22	+0.7
2,700,159	+		EFB2_02564	0.22	-0.6
2,700,159	+		EFB2_02564	0.22	+1.3
2,700,160	-		EFB2_02564	0.22	-1.2
2,700,160	-		EFB2_02564	0.22	+0.2
2,700,160	-		EFB2_02564	0.22	-1.1
2,700,160	-		EFB2_02564	0.22	-2.8
2,700,163	+		EFB2_02564	0.22	+1.0
2,700,163	+		EFB2_02564	0.22	+1.1
2,700,163	+		EFB2_02564	0.22	+1.5
2,700,164	-		EFB2_02564	0.22	-1.8
2,700,164	-		EFB2_02564	0.22	+0.4
2,700,164	-		EFB2_02564	0.22	-0.9
2,700,164	-		EFB2_02564	0.22	-0.2
2,700,164	-		EFB2_02564	0.22	-0.1
2,700,180	+		EFB2_02564	0.24	-0.9
2,700,181	-		EFB2_02564	0.24	+1.3
2,700,207	+		EFB2_02564	0.28	-1.1
2,700,208	-		EFB2_02564	0.28	+0.9
2,700,208	-		EFB2_02564	0.28	+2.7
2,700,208	-		EFB2_02564	0.28	-1.1
2,700,208	-		EFB2_02564	0.28	-0.9
2,700,208	-		EFB2_02564	0.28	+5.8
2,700,221	+		EFB2_02564	0.29	+0.3
2,700,228	+		EFB2_02564	0.30	-0.9
2,700,255	+		EFB2_02564	0.34	-2.9
2,700,256	-		EFB2_02564	0.34	+2.1
2,700,256	-		EFB2_02564	0.34	+2.5
2,700,256	-		EFB2_02564	0.34	-2.9
2,700,278	+		EFB2_02564	0.37	-0.9
2,700,290	+		EFB2_02564	0.38	+0.9
2,700,290	+		EFB2_02564	0.38	-1.2
2,700,290	+		EFB2_02564	0.38	-0.9
2,700,290	+		EFB2_02564	0.38	-1.7
2,700,291	-		EFB2_02564	0.38	-0.3
2,700,291	-		EFB2_02564	0.38	+1.9
2,700,350	+		EFB2_02564	0.46	+0.6
2,700,350	+		EFB2_02564	0.46	-0.6
2,700,350	+		EFB2_02564	0.46	-0.6
2,700,350	+		EFB2_02564	0.46	-0.6
2,700,363	+		EFB2_02564	0.47	+1.2
2,700,363	+		EFB2_02564	0.47	+0.7
2,700,379	-		EFB2_02564	0.49	+3.4
2,700,379	-		EFB2_02564	0.49	+2.3
2,700,390	-		EFB2_02564	0.51	-0.1
2,700,390	-		EFB2_02564	0.51	+1.4
2,700,390	-		EFB2_02564	0.51	-2.0
2,700,390	-		EFB2_02564	0.51	-0.1
2,700,452	+		EFB2_02564	0.58	+0.9
2,700,452	+		EFB2_02564	0.58	+1.4
2,700,453	-		EFB2_02564	0.58	+2.3
2,700,488	+		EFB2_02564	0.63	-2.3
2,700,488	+		EFB2_02564	0.63	-1.4
2,700,488	+		EFB2_02564	0.63	+0.1
2,700,488	+		EFB2_02564	0.63	+0.3
2,700,488	+		EFB2_02564	0.63	-1.6
2,700,488	+		EFB2_02564	0.63	+2.3
2,700,489	-		EFB2_02564	0.63	-0.3
2,700,489	-		EFB2_02564	0.63	-0.1
2,700,489	-		EFB2_02564	0.63	-0.6
2,700,489	-		EFB2_02564	0.63	+1.3
2,700,523	+		EFB2_02564	0.67	+0.8
2,700,523	+		EFB2_02564	0.67	-1.4
2,700,523	+		EFB2_02564	0.67	-0.6
2,700,523	+		EFB2_02564	0.67	-2.4
2,700,523	+		EFB2_02564	0.67	-2.1
2,700,524	-		EFB2_02564	0.67	-1.8
2,700,524	-		EFB2_02564	0.67	+1.7
2,700,584	+		EFB2_02564	0.75	+1.2
2,700,584	+		EFB2_02564	0.75	+1.4
2,700,620	+		EFB2_02564	0.79	-0.6
2,700,620	+		EFB2_02564	0.79	+0.4
2,700,620	+		EFB2_02564	0.79	+0.5
2,700,620	+		EFB2_02564	0.79	+1.3
2,700,620	+		EFB2_02564	0.79	+3.6
2,700,620	+		EFB2_02564	0.79	+1.4
2,700,620	+		EFB2_02564	0.79	-1.6
2,700,620	+		EFB2_02564	0.79	-0.6
2,700,620	+		EFB2_02564	0.79	-1.4
2,700,620	+		EFB2_02564	0.79	+2.2
2,700,620	+		EFB2_02564	0.79	+1.3
2,700,620	+		EFB2_02564	0.79	+0.9
2,700,620	+		EFB2_02564	0.79	-0.7
2,700,620	+		EFB2_02564	0.79	+1.1
2,700,620	+		EFB2_02564	0.79	-1.1
2,700,620	+		EFB2_02564	0.79	+0.3
2,700,620	+		EFB2_02564	0.79	+0.3
2,700,620	+		EFB2_02564	0.79	-1.1
2,700,620	+		EFB2_02564	0.79	+0.3
2,700,621	-		EFB2_02564	0.79	+2.8
2,700,621	-		EFB2_02564	0.79	-1.1
2,700,621	-		EFB2_02564	0.79	+0.6
2,700,621	-		EFB2_02564	0.79	+1.3
2,700,683	-		EFB2_02564	0.87	+1.8
2,700,735	+				+0.7
2,700,735	+				-1.6
2,700,735	+				+0.9
2,700,735	+				+1.2
2,700,736	-				+0.5
2,700,736	-				-0.3
2,700,744	+				-2.9
2,700,744	+				-0.6
2,700,744	+				+1.3
2,700,744	+				-1.6
2,700,744	+				+0.6
2,700,744	+				+1.5
2,700,744	+				+1.0
2,700,744	+				-0.6
2,700,744	+				+1.3
2,700,744	+				-0.3
2,700,744	+				-1.6
2,700,744	+				-1.7
2,700,744	+				-1.6
2,700,744	+				-1.3
2,700,744	+				+1.3
2,700,744	+				+0.3
2,700,744	+				-2.3
2,700,744	+				+1.1
2,700,744	+				-1.3
2,700,744	+				-0.2
2,700,744	+				+1.9
2,700,744	+				-0.8
2,700,745	-				-2.7
2,700,745	-				+2.3
2,700,745	-				-0.7
2,700,745	-				+1.4
2,700,745	-				-0.1
2,700,745	-				+0.7
2,700,745	-				-1.8
2,700,745	-				+0.8
2,700,745	-				-0.3
2,700,745	-				-0.7
2,700,745	-				+1.9
2,700,745	-				+0.7
2,700,745	-				+0.2
2,700,745	-				+3.4
2,700,745	-				+0.7
2,700,745	-				-1.7
2,700,745	-				-0.9
2,700,745	-				+0.2
2,700,745	-				+0.4
2,700,745	-				-1.2
2,700,745	-				-0.7
2,700,745	-				+0.3
2,700,745	-				-1.2
2,700,745	-				-1.3
2,700,745	-				-0.2
2,700,745	-				-1.9
2,700,745	-				-1.1
2,700,777	-				-0.3
2,700,779	+				-2.0
2,700,779	+				-2.2
2,700,779	+				+1.9
2,700,779	+				-0.7
2,700,779	+				+0.6
2,700,779	+				-2.3
2,700,780	-				+1.3
2,700,780	-				+0.3
2,700,780	-				+1.4
2,700,780	-				-1.6
2,700,780	-				+1.3
2,700,780	-				+0.4
2,700,796	+				-2.6
2,700,807	+				-0.6
2,700,814	-				-1.2
2,700,825	+				+0.3
2,700,825	+				-1.3
2,700,826	-				+1.0
2,700,828	+				-1.4
2,700,829	-				-0.8
2,700,864	+				-1.8
2,700,898	-				-0.1
2,700,917	+				-0.4
2,700,917	+				+0.2
2,700,918	-				-2.8
2,700,921	+				+3.0
2,700,921	+				+1.3
2,700,922	-				-0.4
2,700,922	-				-0.1
2,700,922	-				+1.0
2,700,928	+				-2.1
2,700,928	+				+0.7
2,700,928	+				-0.6
2,700,928	+				-2.2
2,700,929	-				-0.3
2,700,929	-				+0.3
2,700,929	-				-1.0
2,700,929	-				+2.3
2,700,992	-				-0.1
2,701,016	-				+0.3
2,701,034	-				-1.7
2,701,034	-				-1.4
2,701,034	-				-2.4
2,701,050	+				-0.7
2,701,050	+				+0.0
2,701,051	-				+0.8
2,701,091	-				-1.1
2,701,091	-				-1.0
2,701,137	+				+1.4
2,701,138	-				+1.0
2,701,138	-				+0.5
2,701,138	-				-2.6
2,701,138	-				+2.7
2,701,141	+				-1.6
2,701,142	-				-0.6
2,701,142	-				+0.6
2,701,157	+				+1.1
2,701,157	+				+0.6
2,701,157	+				-2.4
2,701,157	+				-1.3
2,701,157	+				+0.3
2,701,158	-				+1.7
2,701,158	-				+0.4
2,701,158	-				-0.5
2,701,158	-				+1.8
2,701,209	-				-0.3
2,701,209	-				+0.1
2,701,209	-				-1.7
2,701,327	-				-0.2
2,701,327	-				+0.7
2,701,332	-				-0.6
2,701,381	-				-2.7
2,701,435	+				-0.3
2,701,436	-				+2.5
2,701,624	+		EFB2_02565	0.15	+3.7
2,701,625	-		EFB2_02565	0.15	+1.3
2,701,625	-		EFB2_02565	0.15	+1.4
2,701,625	-		EFB2_02565	0.15	+0.8
2,701,625	-		EFB2_02565	0.15	-0.4
2,701,625	-		EFB2_02565	0.15	+1.4
2,701,664	-		EFB2_02565	0.16	+0.8
2,701,664	-		EFB2_02565	0.16	-1.1
2,701,711	-		EFB2_02565	0.17	+0.5