Strain Fitness in Escherichia fergusonii Becca around EFB2_01656

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,746,573	+		EFB2_01654	0.50	-1.9
1,746,574	-		EFB2_01654	0.50	+1.4
1,746,592	+		EFB2_01654	0.53	-1.3
1,746,592	+		EFB2_01654	0.53	-0.9
1,746,592	+		EFB2_01654	0.53	-1.0
1,746,592	+		EFB2_01654	0.53	+0.6
1,746,592	+		EFB2_01654	0.53	-0.9
1,746,592	+		EFB2_01654	0.53	-1.5
1,746,593	-		EFB2_01654	0.53	+0.7
1,746,593	-		EFB2_01654	0.53	-2.3
1,746,593	-		EFB2_01654	0.53	+1.2
1,746,593	-		EFB2_01654	0.53	-1.8
1,746,593	-		EFB2_01654	0.53	+0.7
1,746,593	-		EFB2_01654	0.53	+0.8
1,746,593	-		EFB2_01654	0.53	-1.7
1,746,593	-		EFB2_01654	0.53	+0.8
1,746,602	+		EFB2_01654	0.55	-1.2
1,746,602	+		EFB2_01654	0.55	-1.4
1,746,602	+		EFB2_01654	0.55	+1.6
1,746,602	+		EFB2_01654	0.55	-2.9
1,746,602	+		EFB2_01654	0.55	+2.1
1,746,602	+		EFB2_01654	0.55	-0.8
1,746,602	+		EFB2_01654	0.55	-1.2
1,746,603	-		EFB2_01654	0.55	-2.0
1,746,603	-		EFB2_01654	0.55	-2.2
1,746,603	-		EFB2_01654	0.55	+0.1
1,746,603	-		EFB2_01654	0.55	-2.9
1,746,603	-		EFB2_01654	0.55	+0.0
1,746,603	-		EFB2_01654	0.55	-0.6
1,746,603	-		EFB2_01654	0.55	-0.5
1,746,603	-		EFB2_01654	0.55	+1.4
1,746,697	+		EFB2_01654	0.70	+0.1
1,746,697	+		EFB2_01654	0.70	+0.5
1,746,697	+		EFB2_01654	0.70	+1.1
1,746,697	+		EFB2_01654	0.70	-3.3
1,746,697	+		EFB2_01654	0.70	+0.4
1,746,697	+		EFB2_01654	0.70	-0.1
1,746,697	+		EFB2_01654	0.70	-0.9
1,746,698	-		EFB2_01654	0.71	+0.6
1,746,698	-		EFB2_01654	0.71	-0.1
1,746,698	-		EFB2_01654	0.71	+1.4
1,746,698	-		EFB2_01654	0.71	-0.3
1,746,698	-		EFB2_01654	0.71	-1.0
1,746,698	-		EFB2_01654	0.71	-1.5
1,746,698	-		EFB2_01654	0.71	-0.7
1,746,715	+		EFB2_01654	0.73	-0.5
1,746,716	-		EFB2_01654	0.74	+2.5
1,746,716	-		EFB2_01654	0.74	+0.8
1,746,734	+		EFB2_01654	0.77	+0.3
1,746,734	+		EFB2_01654	0.77	+0.6
1,746,734	+		EFB2_01654	0.77	+0.7
1,746,734	+		EFB2_01654	0.77	-1.7
1,746,734	+		EFB2_01654	0.77	+0.5
1,746,734	+		EFB2_01654	0.77	+0.0
1,746,734	+		EFB2_01654	0.77	+1.0
1,746,734	+		EFB2_01654	0.77	-0.8
1,746,734	+		EFB2_01654	0.77	-1.4
1,746,734	+		EFB2_01654	0.77	-0.0
1,746,734	+		EFB2_01654	0.77	-0.2
1,746,735	-		EFB2_01654	0.77	-2.2
1,746,735	-		EFB2_01654	0.77	-0.8
1,746,735	-		EFB2_01654	0.77	+0.2
1,746,735	-		EFB2_01654	0.77	-0.1
1,746,735	-		EFB2_01654	0.77	-0.3
1,746,735	-		EFB2_01654	0.77	+0.9
1,746,735	-		EFB2_01654	0.77	-0.6
1,746,735	-		EFB2_01654	0.77	+1.5
1,746,735	-		EFB2_01654	0.77	-0.6
1,746,736	+		EFB2_01654	0.77	-0.5
1,746,736	+		EFB2_01654	0.77	-0.4
1,746,736	+		EFB2_01654	0.77	-3.0
1,746,736	+		EFB2_01654	0.77	-1.6
1,746,736	+		EFB2_01654	0.77	-3.2
1,746,736	+		EFB2_01654	0.77	-0.0
1,746,736	+		EFB2_01654	0.77	+0.0
1,746,736	+		EFB2_01654	0.77	-2.4
1,746,736	+		EFB2_01654	0.77	-0.7
1,746,736	+		EFB2_01654	0.77	+2.6
1,746,736	+		EFB2_01654	0.77	-1.4
1,746,736	+		EFB2_01654	0.77	-0.5
1,746,736	+		EFB2_01654	0.77	-0.8
1,746,736	+		EFB2_01654	0.77	+0.4
1,746,736	+		EFB2_01654	0.77	-0.5
1,746,736	+		EFB2_01654	0.77	-0.8
1,746,737	-		EFB2_01654	0.77	-1.6
1,746,737	-		EFB2_01654	0.77	-3.1
1,746,737	-		EFB2_01654	0.77	+1.8
1,746,737	-		EFB2_01654	0.77	+0.5
1,746,737	-		EFB2_01654	0.77	+0.4
1,746,737	-		EFB2_01654	0.77	-0.2
1,746,737	-		EFB2_01654	0.77	-0.6
1,746,737	-		EFB2_01654	0.77	-0.2
1,746,737	-		EFB2_01654	0.77	+5.0
1,746,742	+		EFB2_01654	0.78	+0.4
1,746,742	+		EFB2_01654	0.78	+1.4
1,746,742	+		EFB2_01654	0.78	-1.1
1,746,742	+		EFB2_01654	0.78	+0.2
1,746,742	+		EFB2_01654	0.78	+1.4
1,746,743	-		EFB2_01654	0.78	-2.0
1,746,743	-		EFB2_01654	0.78	+1.5
1,746,743	-		EFB2_01654	0.78	-0.8
1,746,743	-		EFB2_01654	0.78	-0.8
1,746,743	-		EFB2_01654	0.78	+0.2
1,746,743	-		EFB2_01654	0.78	+0.6
1,746,743	-		EFB2_01654	0.78	+2.0
1,746,743	-		EFB2_01654	0.78	+1.5
1,746,808	+		EFB2_01654	0.89	-1.7
1,746,809	-		EFB2_01654	0.89	-2.4
1,746,821	-				+0.3
1,746,872	+				-1.8
1,746,881	+				+1.4
1,746,892	+				-0.1
1,746,892	+				+0.1
1,746,892	+				-0.9
1,746,892	+				+2.0
1,746,893	-				-2.3
1,746,912	+				+0.5
1,746,912	+				+0.0
1,746,912	+				+0.8
1,746,912	+				-0.8
1,746,912	+				-1.4
1,746,912	+				+0.5
1,746,912	+				+2.8
1,746,912	+				-0.2
1,746,912	+				-1.5
1,746,912	+				+0.6
1,746,913	-				-2.2
1,746,913	-				-0.4
1,746,913	-				+1.0
1,746,913	-				-0.6
1,746,913	-				+2.0
1,746,913	-				-0.1
1,746,939	+				+1.2
1,746,939	+				+1.9
1,746,939	+				+0.8
1,746,939	+				-3.2
1,746,940	-				+1.7
1,746,940	-				-3.3
1,746,940	-				+1.0
1,746,940	-				-3.0
1,746,940	-				-0.0
1,746,940	-				+2.8
1,746,940	-				+0.0
1,746,940	-				-1.6
1,746,940	-				+1.0
1,746,943	+				-0.8
1,746,944	-				+0.8
1,746,944	-				+3.1
1,746,944	-				+0.2
1,746,944	-				+1.1
1,746,958	+		EFB2_01655	0.11	-0.5
1,746,958	+		EFB2_01655	0.11	+1.1
1,746,958	+		EFB2_01655	0.11	+0.4
1,746,959	-		EFB2_01655	0.11	+1.3
1,746,959	-		EFB2_01655	0.11	+2.9
1,746,959	-		EFB2_01655	0.11	+0.6
1,746,981	+		EFB2_01655	0.14	-0.2
1,746,982	-		EFB2_01655	0.14	+1.0
1,747,095	+		EFB2_01655	0.33	-1.7
1,747,095	+		EFB2_01655	0.33	+1.8
1,747,095	+		EFB2_01655	0.33	+0.8
1,747,095	+		EFB2_01655	0.33	+1.9
1,747,096	-		EFB2_01655	0.33	+0.1
1,747,096	-		EFB2_01655	0.33	+0.8
1,747,096	-		EFB2_01655	0.33	-3.7
1,747,106	+		EFB2_01655	0.34	+0.8
1,747,106	+		EFB2_01655	0.34	-2.2
1,747,106	+		EFB2_01655	0.34	-0.3
1,747,106	+		EFB2_01655	0.34	+0.4
1,747,106	+		EFB2_01655	0.34	+0.2
1,747,106	+		EFB2_01655	0.34	-3.2
1,747,106	+		EFB2_01655	0.34	+0.7
1,747,107	-		EFB2_01655	0.35	-2.1
1,747,107	-		EFB2_01655	0.35	+2.6
1,747,107	-		EFB2_01655	0.35	-0.4
1,747,107	-		EFB2_01655	0.35	+1.3
1,747,107	-		EFB2_01655	0.35	-2.8
1,747,107	-		EFB2_01655	0.35	+0.0
1,747,107	-		EFB2_01655	0.35	+0.1
1,747,107	-		EFB2_01655	0.35	+1.0
1,747,123	-		EFB2_01655	0.37	+1.2
1,747,128	+		EFB2_01655	0.38	-1.1
1,747,129	-		EFB2_01655	0.38	-1.0
1,747,167	+		EFB2_01655	0.44	+0.0
1,747,184	+		EFB2_01655	0.47	-2.7
1,747,255	+		EFB2_01655	0.59	-0.3
1,747,302	+		EFB2_01655	0.66	-0.1
1,747,339	-		EFB2_01655	0.72	-1.8
1,747,354	+		EFB2_01655	0.75	+1.1
1,747,396	+		EFB2_01655	0.81	+0.0
1,747,396	+		EFB2_01655	0.81	+0.3
1,747,397	-		EFB2_01655	0.82	-0.9
1,747,408	+		EFB2_01655	0.83	-1.3
1,747,409	-		EFB2_01655	0.83	-2.6
1,747,409	-		EFB2_01655	0.83	-2.5
1,747,620	+		EFB2_01656	0.17	+1.2
1,747,665	+		EFB2_01656	0.24	-2.6
1,747,665	+		EFB2_01656	0.24	-1.2
1,747,665	+		EFB2_01656	0.24	-0.6
1,747,665	+		EFB2_01656	0.24	+0.2
1,747,666	-		EFB2_01656	0.24	-1.0
1,747,666	-		EFB2_01656	0.24	+1.7
1,747,666	-		EFB2_01656	0.24	-0.0
1,747,666	-		EFB2_01656	0.24	+1.7
1,747,666	-		EFB2_01656	0.24	-0.6
1,747,830	-		EFB2_01656	0.49	-1.0
1,747,850	+		EFB2_01656	0.52	-3.6
1,747,851	-		EFB2_01656	0.52	+0.9
1,747,859	+		EFB2_01656	0.53	-2.8
1,747,860	-		EFB2_01656	0.53	-0.8
1,747,876	+		EFB2_01656	0.56	-2.3
1,747,877	-		EFB2_01656	0.56	-0.2
1,747,877	-		EFB2_01656	0.56	-0.5
1,747,877	-		EFB2_01656	0.56	+1.3
1,747,921	-		EFB2_01656	0.62	-1.1
1,747,968	+		EFB2_01656	0.70	-0.6
1,747,969	-		EFB2_01656	0.70	+1.6
1,747,969	-		EFB2_01656	0.70	-2.2
1,747,994	+		EFB2_01656	0.73	+1.5
1,747,994	+		EFB2_01656	0.73	+0.1
1,747,995	-		EFB2_01656	0.74	-1.6
1,748,013	+		EFB2_01656	0.76	+0.8
1,748,022	-		EFB2_01656	0.78	-0.7
1,748,022	-		EFB2_01656	0.78	-1.2
1,748,058	+		EFB2_01656	0.83	-1.0
1,748,058	+		EFB2_01656	0.83	-2.5
1,748,058	+		EFB2_01656	0.83	-0.8
1,748,058	+		EFB2_01656	0.83	+2.1
1,748,058	+		EFB2_01656	0.83	-3.2
1,748,059	-		EFB2_01656	0.83	+0.1
1,748,059	-		EFB2_01656	0.83	+0.8
1,748,059	-		EFB2_01656	0.83	+1.4
1,748,059	-		EFB2_01656	0.83	+0.7
1,748,059	-		EFB2_01656	0.83	+0.4
1,748,080	+		EFB2_01656	0.86	+0.7
1,748,080	+		EFB2_01656	0.86	+1.3
1,748,080	+		EFB2_01656	0.86	+0.4
1,748,080	+		EFB2_01656	0.86	+0.5
1,748,123	+				-2.2
1,748,123	+				+0.2
1,748,123	+				+1.0
1,748,123	+				+0.3
1,748,123	+				+1.8
1,748,123	+				+1.2
1,748,123	+				+2.6
1,748,123	+				-1.8
1,748,123	+				-0.6
1,748,123	+				+1.0
1,748,124	-				-1.3
1,748,124	-				-0.3
1,748,124	-				-0.2
1,748,124	-				-1.0
1,748,124	-				+3.3
1,748,124	-				+0.7
1,748,124	-				-2.1
1,748,124	-				+1.8
1,748,124	-				-1.7
1,748,124	-				+0.2
1,748,124	-				+1.1
1,748,124	-				+0.4
1,748,124	-				-1.0
1,748,210	+				-2.4
1,748,210	+				-0.8
1,748,210	+				+0.4
1,748,210	+				-1.2
1,748,210	+				-2.4
1,748,211	-				-1.7
1,748,211	-				-0.9
1,748,211	-				-0.2
1,748,211	-				+0.2
1,748,211	-				-0.8
1,748,211	-				-0.2
1,748,211	-				+0.1
1,748,211	-				-1.0
1,748,254	-				+0.5
1,748,254	-				-0.2
1,748,273	+				-0.6
1,748,273	+				-2.6
1,748,273	+				-0.6
1,748,274	-				-2.6
1,748,274	-				-0.7
1,748,275	+				+1.5
1,748,276	-				+0.0
1,748,277	-				+0.9
1,748,309	+		EFB2_01657	0.13	-1.1
1,748,309	+		EFB2_01657	0.13	+1.1
1,748,310	-		EFB2_01657	0.13	-2.3
1,748,352	+		EFB2_01657	0.19	-1.3
1,748,352	+		EFB2_01657	0.19	+1.4
1,748,353	-		EFB2_01657	0.19	+2.1
1,748,366	+		EFB2_01657	0.21	-2.4
1,748,366	+		EFB2_01657	0.21	-0.7
1,748,366	+		EFB2_01657	0.21	-0.9
1,748,366	+		EFB2_01657	0.21	+1.6
1,748,366	+		EFB2_01657	0.21	+1.3
1,748,366	+		EFB2_01657	0.21	-0.1
1,748,366	+		EFB2_01657	0.21	-1.9
1,748,366	+		EFB2_01657	0.21	+0.3
1,748,366	+		EFB2_01657	0.21	+1.0
1,748,366	+		EFB2_01657	0.21	+0.1
1,748,366	+		EFB2_01657	0.21	-0.7
1,748,366	+		EFB2_01657	0.21	+1.0
1,748,366	+		EFB2_01657	0.21	+0.1
1,748,366	+		EFB2_01657	0.21	+0.7
1,748,367	-		EFB2_01657	0.21	+1.1
1,748,367	-		EFB2_01657	0.21	+0.2
1,748,367	-		EFB2_01657	0.21	-0.2
1,748,367	-		EFB2_01657	0.21	+1.5
1,748,367	-		EFB2_01657	0.21	-3.0
1,748,367	-		EFB2_01657	0.21	-0.8
1,748,367	-		EFB2_01657	0.21	+0.4
1,748,367	-		EFB2_01657	0.21	-0.5
1,748,367	-		EFB2_01657	0.21	-0.8
1,748,367	-		EFB2_01657	0.21	+0.3
1,748,371	-		EFB2_01657	0.22	-0.2
1,748,378	+		EFB2_01657	0.23	-3.5
1,748,378	+		EFB2_01657	0.23	+0.6
1,748,378	+		EFB2_01657	0.23	-1.4
1,748,378	+		EFB2_01657	0.23	-0.7
1,748,378	+		EFB2_01657	0.23	+0.8
1,748,378	+		EFB2_01657	0.23	-1.9
1,748,379	-		EFB2_01657	0.23	-0.1
1,748,379	-		EFB2_01657	0.23	+0.5
1,748,382	+		EFB2_01657	0.23	+0.6
1,748,382	+		EFB2_01657	0.23	-0.2
1,748,382	+		EFB2_01657	0.23	+0.0
1,748,382	+		EFB2_01657	0.23	-1.3
1,748,382	+		EFB2_01657	0.23	+0.0
1,748,382	+		EFB2_01657	0.23	+1.0
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