Strain Fitness in Escherichia fergusonii Becca around EFB2_01112

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,159,751	+		EFB2_01111	0.14	+1.3
1,159,752	-		EFB2_01111	0.14	-1.1
1,159,756	+		EFB2_01111	0.15	-0.9
1,159,756	+		EFB2_01111	0.15	+1.0
1,159,757	-		EFB2_01111	0.15	-2.3
1,159,807	+		EFB2_01111	0.19	+0.5
1,159,807	+		EFB2_01111	0.19	+2.2
1,159,807	+		EFB2_01111	0.19	+0.1
1,159,807	+		EFB2_01111	0.19	+3.9
1,159,807	+		EFB2_01111	0.19	-0.3
1,159,808	-		EFB2_01111	0.20	+1.4
1,159,808	-		EFB2_01111	0.20	+1.1
1,159,808	-		EFB2_01111	0.20	+1.1
1,159,808	-		EFB2_01111	0.20	-1.0
1,159,808	-		EFB2_01111	0.20	-2.8
1,159,808	-		EFB2_01111	0.20	-2.3
1,159,847	+		EFB2_01111	0.23	-0.1
1,159,847	+		EFB2_01111	0.23	-0.1
1,159,847	+		EFB2_01111	0.23	-1.9
1,159,847	+		EFB2_01111	0.23	+1.5
1,159,847	+		EFB2_01111	0.23	+1.1
1,159,847	+		EFB2_01111	0.23	+0.7
1,159,847	+		EFB2_01111	0.23	-2.4
1,159,847	+		EFB2_01111	0.23	-2.6
1,159,847	+		EFB2_01111	0.23	+0.2
1,159,848	-		EFB2_01111	0.23	+0.1
1,159,848	-		EFB2_01111	0.23	-2.2
1,159,848	-		EFB2_01111	0.23	-0.1
1,159,848	-		EFB2_01111	0.23	+0.3
1,159,848	-		EFB2_01111	0.23	+1.7
1,159,848	-		EFB2_01111	0.23	+1.3
1,159,848	-		EFB2_01111	0.23	-1.2
1,159,848	-		EFB2_01111	0.23	-0.5
1,159,848	-		EFB2_01111	0.23	-0.3
1,159,848	-		EFB2_01111	0.23	+2.5
1,159,848	-		EFB2_01111	0.23	+1.2
1,159,850	+		EFB2_01111	0.23	+0.2
1,159,850	+		EFB2_01111	0.23	+0.1
1,159,851	-		EFB2_01111	0.23	+0.9
1,159,851	-		EFB2_01111	0.23	-0.7
1,159,851	-		EFB2_01111	0.23	+0.1
1,159,870	+		EFB2_01111	0.25	+0.3
1,159,870	+		EFB2_01111	0.25	-2.0
1,159,870	+		EFB2_01111	0.25	-0.4
1,159,870	+		EFB2_01111	0.25	-0.8
1,159,871	-		EFB2_01111	0.25	+0.4
1,159,871	-		EFB2_01111	0.25	+1.7
1,159,871	-		EFB2_01111	0.25	-1.8
1,159,879	+		EFB2_01111	0.26	-1.7
1,159,879	+		EFB2_01111	0.26	+0.1
1,159,879	+		EFB2_01111	0.26	-0.9
1,159,879	+		EFB2_01111	0.26	+0.1
1,159,880	-		EFB2_01111	0.26	+1.2
1,159,880	-		EFB2_01111	0.26	-0.2
1,159,882	+		EFB2_01111	0.26	-1.3
1,159,883	-		EFB2_01111	0.26	-0.1
1,159,883	-		EFB2_01111	0.26	-1.9
1,159,956	-		EFB2_01111	0.33	+0.7
1,160,010	+		EFB2_01111	0.38	+0.5
1,160,010	+		EFB2_01111	0.38	-0.3
1,160,010	+		EFB2_01111	0.38	-1.0
1,160,010	+		EFB2_01111	0.38	-0.0
1,160,010	+		EFB2_01111	0.38	-1.3
1,160,010	+		EFB2_01111	0.38	-0.6
1,160,010	+		EFB2_01111	0.38	+0.9
1,160,010	+		EFB2_01111	0.38	-0.6
1,160,011	-		EFB2_01111	0.38	+0.3
1,160,011	-		EFB2_01111	0.38	+1.7
1,160,011	-		EFB2_01111	0.38	+0.2
1,160,011	-		EFB2_01111	0.38	-1.9
1,160,011	-		EFB2_01111	0.38	+0.8
1,160,011	-		EFB2_01111	0.38	+1.1
1,160,011	-		EFB2_01111	0.38	+1.1
1,160,011	-		EFB2_01111	0.38	+0.1
1,160,041	+		EFB2_01111	0.41	+1.9
1,160,041	+		EFB2_01111	0.41	+2.3
1,160,041	+		EFB2_01111	0.41	-0.2
1,160,041	+		EFB2_01111	0.41	+1.1
1,160,041	+		EFB2_01111	0.41	+0.6
1,160,041	+		EFB2_01111	0.41	+0.1
1,160,041	+		EFB2_01111	0.41	-0.9
1,160,041	+		EFB2_01111	0.41	+0.2
1,160,041	+		EFB2_01111	0.41	+0.1
1,160,041	+		EFB2_01111	0.41	+0.2
1,160,041	+		EFB2_01111	0.41	+0.8
1,160,041	+		EFB2_01111	0.41	+0.2
1,160,041	+		EFB2_01111	0.41	+0.6
1,160,041	+		EFB2_01111	0.41	+0.1
1,160,041	+		EFB2_01111	0.41	+0.2
1,160,041	+		EFB2_01111	0.41	+0.6
1,160,042	-		EFB2_01111	0.41	+0.5
1,160,042	-		EFB2_01111	0.41	-1.5
1,160,042	-		EFB2_01111	0.41	+1.6
1,160,042	-		EFB2_01111	0.41	-3.4
1,160,042	-		EFB2_01111	0.41	-1.0
1,160,042	-		EFB2_01111	0.41	-0.1
1,160,042	-		EFB2_01111	0.41	+0.1
1,160,042	-		EFB2_01111	0.41	-0.2
1,160,042	-		EFB2_01111	0.41	-2.1
1,160,042	-		EFB2_01111	0.41	-1.3
1,160,042	-		EFB2_01111	0.41	+0.5
1,160,042	-		EFB2_01111	0.41	+0.0
1,160,042	-		EFB2_01111	0.41	+1.0
1,160,042	-		EFB2_01111	0.41	-0.9
1,160,042	-		EFB2_01111	0.41	+0.4
1,160,042	-		EFB2_01111	0.41	-0.0
1,160,048	+		EFB2_01111	0.41	-2.1
1,160,049	-		EFB2_01111	0.41	+1.7
1,160,067	+		EFB2_01111	0.43	+0.5
1,160,067	+		EFB2_01111	0.43	+0.2
1,160,067	+		EFB2_01111	0.43	+2.5
1,160,067	+		EFB2_01111	0.43	+0.7
1,160,067	+		EFB2_01111	0.43	-1.1
1,160,068	-		EFB2_01111	0.43	-0.3
1,160,068	-		EFB2_01111	0.43	+0.4
1,160,068	-		EFB2_01111	0.43	+1.7
1,160,068	-		EFB2_01111	0.43	+0.7
1,160,068	-		EFB2_01111	0.43	+4.4
1,160,069	+		EFB2_01111	0.43	-0.9
1,160,069	+		EFB2_01111	0.43	+0.3
1,160,069	+		EFB2_01111	0.43	-0.9
1,160,070	-		EFB2_01111	0.43	+1.4
1,160,070	-		EFB2_01111	0.43	-1.1
1,160,076	+		EFB2_01111	0.44	-1.2
1,160,082	+		EFB2_01111	0.44	+0.1
1,160,082	+		EFB2_01111	0.44	-3.2
1,160,082	+		EFB2_01111	0.44	-0.8
1,160,082	+		EFB2_01111	0.44	-0.9
1,160,083	-		EFB2_01111	0.45	+0.6
1,160,093	+		EFB2_01111	0.45	-1.1
1,160,093	+		EFB2_01111	0.45	+1.4
1,160,094	-		EFB2_01111	0.46	+1.2
1,160,094	-		EFB2_01111	0.46	+1.8
1,160,106	+		EFB2_01111	0.47	-2.2
1,160,106	+		EFB2_01111	0.47	-1.6
1,160,106	+		EFB2_01111	0.47	+0.0
1,160,106	+		EFB2_01111	0.47	-1.7
1,160,106	+		EFB2_01111	0.47	-0.0
1,160,106	+		EFB2_01111	0.47	-2.9
1,160,106	+		EFB2_01111	0.47	+1.3
1,160,106	+		EFB2_01111	0.47	+0.2
1,160,106	+		EFB2_01111	0.47	-2.8
1,160,106	+		EFB2_01111	0.47	-0.9
1,160,106	+		EFB2_01111	0.47	+1.5
1,160,106	+		EFB2_01111	0.47	+0.2
1,160,106	+		EFB2_01111	0.47	+0.3
1,160,106	+		EFB2_01111	0.47	+2.1
1,160,106	+		EFB2_01111	0.47	-0.1
1,160,106	+		EFB2_01111	0.47	-2.5
1,160,106	+		EFB2_01111	0.47	-0.5
1,160,106	+		EFB2_01111	0.47	-0.6
1,160,107	-		EFB2_01111	0.47	-2.5
1,160,107	-		EFB2_01111	0.47	+1.1
1,160,107	-		EFB2_01111	0.47	+0.7
1,160,107	-		EFB2_01111	0.47	-0.5
1,160,107	-		EFB2_01111	0.47	+1.9
1,160,107	-		EFB2_01111	0.47	-3.2
1,160,107	-		EFB2_01111	0.47	+0.7
1,160,107	-		EFB2_01111	0.47	-0.3
1,160,107	-		EFB2_01111	0.47	-0.5
1,160,107	-		EFB2_01111	0.47	+0.1
1,160,107	-		EFB2_01111	0.47	-0.7
1,160,107	-		EFB2_01111	0.47	+0.2
1,160,107	-		EFB2_01111	0.47	-0.9
1,160,107	-		EFB2_01111	0.47	-1.1
1,160,107	-		EFB2_01111	0.47	+1.0
1,160,107	-		EFB2_01111	0.47	-1.2
1,160,107	-		EFB2_01111	0.47	-0.3
1,160,107	-		EFB2_01111	0.47	-0.4
1,160,107	-		EFB2_01111	0.47	+2.8
1,160,107	-		EFB2_01111	0.47	+1.7
1,160,107	-		EFB2_01111	0.47	+0.2
1,160,107	-		EFB2_01111	0.47	-1.3
1,160,108	+		EFB2_01111	0.47	+1.2
1,160,108	+		EFB2_01111	0.47	-0.8
1,160,108	+		EFB2_01111	0.47	+0.1
1,160,109	-		EFB2_01111	0.47	+0.7
1,160,189	+		EFB2_01111	0.54	+0.1
1,160,189	+		EFB2_01111	0.54	-1.9
1,160,189	+		EFB2_01111	0.54	+0.1
1,160,189	+		EFB2_01111	0.54	-0.0
1,160,190	-		EFB2_01111	0.54	+2.1
1,160,245	+		EFB2_01111	0.59	-0.6
1,160,246	-		EFB2_01111	0.59	+0.5
1,160,246	-		EFB2_01111	0.59	+0.3
1,160,246	-		EFB2_01111	0.59	-2.4
1,160,272	-		EFB2_01111	0.62	-2.9
1,160,272	-		EFB2_01111	0.62	-0.8
1,160,272	-		EFB2_01111	0.62	-0.1
1,160,301	+		EFB2_01111	0.64	+0.3
1,160,301	+		EFB2_01111	0.64	-1.9
1,160,353	+		EFB2_01111	0.69	-1.5
1,160,402	+		EFB2_01111	0.73	+1.1
1,160,402	+		EFB2_01111	0.73	-1.1
1,160,402	+		EFB2_01111	0.73	+0.6
1,160,402	+		EFB2_01111	0.73	+0.1
1,160,402	+		EFB2_01111	0.73	-0.5
1,160,402	+		EFB2_01111	0.73	+0.7
1,160,402	+		EFB2_01111	0.73	+0.1
1,160,402	+		EFB2_01111	0.73	+1.0
1,160,402	+		EFB2_01111	0.73	+0.6
1,160,402	+		EFB2_01111	0.73	+1.8
1,160,402	+		EFB2_01111	0.73	-3.3
1,160,402	+		EFB2_01111	0.73	-1.0
1,160,403	-		EFB2_01111	0.74	-3.2
1,160,403	-		EFB2_01111	0.74	-0.8
1,160,403	-		EFB2_01111	0.74	-0.4
1,160,403	-		EFB2_01111	0.74	+0.1
1,160,403	-		EFB2_01111	0.74	-1.2
1,160,403	-		EFB2_01111	0.74	-1.9
1,160,403	-		EFB2_01111	0.74	+0.8
1,160,403	-		EFB2_01111	0.74	+1.3
1,160,417	-		EFB2_01111	0.75	-0.6
1,160,423	+		EFB2_01111	0.75	+0.6
1,160,424	-		EFB2_01111	0.75	-0.2
1,160,455	+		EFB2_01111	0.78	+1.7
1,160,556	+		EFB2_01111	0.87	+0.4
1,160,556	+		EFB2_01111	0.87	-0.6
1,160,556	+		EFB2_01111	0.87	+0.9
1,160,556	+		EFB2_01111	0.87	+2.5
1,160,556	+		EFB2_01111	0.87	+0.8
1,160,556	+		EFB2_01111	0.87	-0.3
1,160,556	+		EFB2_01111	0.87	-2.6
1,160,556	+		EFB2_01111	0.87	-1.1
1,160,556	+		EFB2_01111	0.87	+0.1
1,160,556	+		EFB2_01111	0.87	+1.7
1,160,556	+		EFB2_01111	0.87	-0.5
1,160,556	+		EFB2_01111	0.87	-0.1
1,160,557	-		EFB2_01111	0.88	-2.9
1,160,557	-		EFB2_01111	0.88	-0.5
1,160,557	-		EFB2_01111	0.88	+0.0
1,160,557	-		EFB2_01111	0.88	-0.5
1,160,557	-		EFB2_01111	0.88	+0.9
1,160,557	-		EFB2_01111	0.88	+1.1
1,160,557	-		EFB2_01111	0.88	-0.8
1,160,557	-		EFB2_01111	0.88	+0.7
1,160,557	-		EFB2_01111	0.88	-2.9
1,160,557	-		EFB2_01111	0.88	-0.6
1,160,557	-		EFB2_01111	0.88	+1.0
1,160,557	-		EFB2_01111	0.88	+0.1
1,160,557	-		EFB2_01111	0.88	+1.8
1,160,558	+		EFB2_01111	0.88	+0.4
1,160,558	+		EFB2_01111	0.88	+1.5
1,160,558	+		EFB2_01111	0.88	-1.2
1,160,559	-		EFB2_01111	0.88	-1.8
1,160,559	-		EFB2_01111	0.88	-0.0
1,160,587	+				+1.2
1,160,587	+				-0.4
1,160,587	+				+0.8
1,160,587	+				+0.4
1,160,588	-				+1.2
1,160,588	-				-0.4
1,160,588	-				+0.2
1,160,588	-				-0.6
1,160,588	-				-0.5
1,160,588	-				-0.1
1,160,616	+				-0.2
1,160,616	+				-0.3
1,160,616	+				+0.1
1,160,617	-				-0.1
1,160,617	-				-1.5
1,160,726	+				-0.3
1,160,727	-				+1.2
1,160,727	-				+0.0
1,160,760	+				-0.4
1,160,760	+				-3.0
1,160,760	+				+1.2
1,160,760	+				+0.8
1,160,761	-				+1.8
1,160,781	+				+1.4
1,160,781	+				-0.9
1,160,781	+				+0.7
1,160,781	+				+0.6
1,160,782	-				-3.4
1,160,782	-				-0.1
1,160,782	-				-0.7
1,160,782	-				-0.3
1,160,782	-				+1.3
1,160,782	-				+0.1
1,160,782	-				+0.7
1,160,782	-				-0.3
1,160,784	+				-0.3
1,160,784	+				-0.0
1,160,785	-				+1.1
1,160,832	+		EFB2_01112	0.13	+0.4
1,160,839	-		EFB2_01112	0.14	+0.6
1,160,844	+		EFB2_01112	0.15	-0.9
1,160,855	-		EFB2_01112	0.16	+1.5
1,160,879	-		EFB2_01112	0.19	-0.1
1,160,879	-		EFB2_01112	0.19	-0.8
1,160,879	-		EFB2_01112	0.19	-0.2
1,160,881	+		EFB2_01112	0.20	+0.2
1,160,882	-		EFB2_01112	0.20	-0.1
1,160,882	-		EFB2_01112	0.20	+2.5
1,160,882	-		EFB2_01112	0.20	+1.4
1,160,894	+		EFB2_01112	0.21	+1.0
1,160,894	+		EFB2_01112	0.21	-2.3
1,160,894	+		EFB2_01112	0.21	-0.7
1,160,894	+		EFB2_01112	0.21	-1.3
1,160,895	-		EFB2_01112	0.22	+0.9
1,160,895	-		EFB2_01112	0.22	-0.7
1,160,895	-		EFB2_01112	0.22	+1.0
1,160,895	-		EFB2_01112	0.22	-0.2
1,160,937	+		EFB2_01112	0.27	+1.9
1,160,985	+		EFB2_01112	0.34	+0.1
1,160,985	+		EFB2_01112	0.34	+0.6
1,160,985	+		EFB2_01112	0.34	-0.6
1,160,985	+		EFB2_01112	0.34	+1.4
1,160,986	-		EFB2_01112	0.34	-0.3
1,160,986	-		EFB2_01112	0.34	-0.6
1,160,986	-		EFB2_01112	0.34	+0.9
1,161,014	+		EFB2_01112	0.38	-2.0
1,161,014	+		EFB2_01112	0.38	+1.2
1,161,014	+		EFB2_01112	0.38	+0.3
1,161,014	+		EFB2_01112	0.38	+0.5
1,161,014	+		EFB2_01112	0.38	+0.6
1,161,014	+		EFB2_01112	0.38	+0.5
1,161,014	+		EFB2_01112	0.38	+0.6
1,161,014	+		EFB2_01112	0.38	+0.5
1,161,014	+		EFB2_01112	0.38	+0.5
1,161,015	-		EFB2_01112	0.38	+0.9
1,161,015	-		EFB2_01112	0.38	-0.3
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