Strain Fitness in Escherichia fergusonii Becca around EFB2_00585

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
589,174	+		EFB2_00584	0.40	-0.0
589,174	+		EFB2_00584	0.40	-1.2
589,175	-		EFB2_00584	0.40	-0.8
589,184	-		EFB2_00584	0.41	+2.0
589,301	+		EFB2_00584	0.49	-1.8
589,301	+		EFB2_00584	0.49	-2.1
589,301	+		EFB2_00584	0.49	+1.4
589,301	+		EFB2_00584	0.49	-3.2
589,301	+		EFB2_00584	0.49	-0.8
589,302	-		EFB2_00584	0.49	-1.9
589,302	-		EFB2_00584	0.49	-3.0
589,302	-		EFB2_00584	0.49	-1.1
589,321	+		EFB2_00584	0.50	-3.9
589,321	+		EFB2_00584	0.50	-0.3
589,331	+		EFB2_00584	0.51	+1.6
589,331	+		EFB2_00584	0.51	-0.9
589,331	+		EFB2_00584	0.51	-1.0
589,331	+		EFB2_00584	0.51	-1.6
589,331	+		EFB2_00584	0.51	+0.4
589,331	+		EFB2_00584	0.51	-2.8
589,331	+		EFB2_00584	0.51	-0.6
589,332	-		EFB2_00584	0.51	-0.4
589,332	-		EFB2_00584	0.51	-0.2
589,332	-		EFB2_00584	0.51	+0.3
589,332	-		EFB2_00584	0.51	+1.0
589,332	-		EFB2_00584	0.51	-0.2
589,332	-		EFB2_00584	0.51	+0.7
589,364	+		EFB2_00584	0.53	-3.3
589,364	+		EFB2_00584	0.53	-0.7
589,364	+		EFB2_00584	0.53	-0.2
589,364	+		EFB2_00584	0.53	-0.9
589,364	+		EFB2_00584	0.53	+2.0
589,364	+		EFB2_00584	0.53	+0.8
589,364	+		EFB2_00584	0.53	-2.4
589,364	+		EFB2_00584	0.53	-0.8
589,364	+		EFB2_00584	0.53	+1.0
589,364	+		EFB2_00584	0.53	-1.3
589,364	+		EFB2_00584	0.53	+0.0
589,365	-		EFB2_00584	0.53	-0.8
589,365	-		EFB2_00584	0.53	-2.4
589,365	-		EFB2_00584	0.53	+0.4
589,365	-		EFB2_00584	0.53	-1.4
589,365	-		EFB2_00584	0.53	-1.0
589,365	-		EFB2_00584	0.53	-1.0
589,365	-		EFB2_00584	0.53	-1.9
589,365	-		EFB2_00584	0.53	+0.1
589,365	-		EFB2_00584	0.53	-2.3
589,365	-		EFB2_00584	0.53	-2.3
589,437	+		EFB2_00584	0.58	-1.5
589,437	+		EFB2_00584	0.58	-1.7
589,437	+		EFB2_00584	0.58	-0.2
589,437	+		EFB2_00584	0.58	-2.3
589,437	+		EFB2_00584	0.58	-2.5
589,438	-		EFB2_00584	0.58	-1.8
589,438	-		EFB2_00584	0.58	-1.4
589,438	-		EFB2_00584	0.58	-1.4
589,438	-		EFB2_00584	0.58	-3.0
589,438	-		EFB2_00584	0.58	-2.7
589,504	+		EFB2_00584	0.62	-1.7
589,553	-		EFB2_00584	0.66	+0.8
589,558	+		EFB2_00584	0.66	+3.0
589,559	-		EFB2_00584	0.66	-1.5
589,559	-		EFB2_00584	0.66	-1.5
589,590	+		EFB2_00584	0.68	+0.4
589,615	+		EFB2_00584	0.70	+0.3
589,616	-		EFB2_00584	0.70	-0.8
589,616	-		EFB2_00584	0.70	-1.1
589,616	-		EFB2_00584	0.70	-0.5
589,622	-		EFB2_00584	0.70	+1.3
589,642	+		EFB2_00584	0.72	-1.5
589,756	+		EFB2_00584	0.80	-2.0
589,757	-		EFB2_00584	0.80	-3.0
589,785	+		EFB2_00584	0.81	-3.4
589,785	+		EFB2_00584	0.81	+0.8
589,785	+		EFB2_00584	0.81	+1.2
589,785	+		EFB2_00584	0.81	+0.2
589,785	+		EFB2_00584	0.81	+0.1
589,785	+		EFB2_00584	0.81	-2.6
589,785	+		EFB2_00584	0.81	-1.6
589,785	+		EFB2_00584	0.81	-0.3
589,785	+		EFB2_00584	0.81	+0.1
589,785	+		EFB2_00584	0.81	+0.8
589,785	+		EFB2_00584	0.81	-1.3
589,785	+		EFB2_00584	0.81	-3.6
589,785	+		EFB2_00584	0.81	-3.1
589,785	+		EFB2_00584	0.81	+0.3
589,785	+		EFB2_00584	0.81	-0.9
589,785	+		EFB2_00584	0.81	+1.9
589,785	+		EFB2_00584	0.81	-1.2
589,785	+		EFB2_00584	0.81	-1.9
589,785	+		EFB2_00584	0.81	-1.5
589,785	+		EFB2_00584	0.81	-0.3
589,785	+		EFB2_00584	0.81	+0.4
589,785	+		EFB2_00584	0.81	+0.3
589,785	+		EFB2_00584	0.81	-0.0
589,785	+		EFB2_00584	0.81	-1.5
589,785	+		EFB2_00584	0.81	-3.6
589,785	+		EFB2_00584	0.81	-0.6
589,785	+		EFB2_00584	0.81	-1.7
589,785	+		EFB2_00584	0.81	+0.4
589,785	+		EFB2_00584	0.81	+1.4
589,785	+		EFB2_00584	0.81	+1.1
589,785	+		EFB2_00584	0.81	-1.0
589,785	+		EFB2_00584	0.81	+0.6
589,786	-		EFB2_00584	0.82	+0.3
589,786	-		EFB2_00584	0.82	+2.0
589,786	-		EFB2_00584	0.82	+0.4
589,786	-		EFB2_00584	0.82	-1.6
589,786	-		EFB2_00584	0.82	+0.3
589,786	-		EFB2_00584	0.82	-0.6
589,786	-		EFB2_00584	0.82	-1.1
589,786	-		EFB2_00584	0.82	-1.0
589,786	-		EFB2_00584	0.82	+2.2
589,786	-		EFB2_00584	0.82	+1.0
589,786	-		EFB2_00584	0.82	-1.6
589,786	-		EFB2_00584	0.82	+0.1
589,786	-		EFB2_00584	0.82	+0.8
589,786	-		EFB2_00584	0.82	-1.7
589,786	-		EFB2_00584	0.82	-2.5
589,786	-		EFB2_00584	0.82	-1.0
589,786	-		EFB2_00584	0.82	-1.6
589,786	-		EFB2_00584	0.82	+1.0
589,786	-		EFB2_00584	0.82	+2.4
589,786	-		EFB2_00584	0.82	+0.8
589,786	-		EFB2_00584	0.82	+0.8
589,786	-		EFB2_00584	0.82	+0.7
589,786	-		EFB2_00584	0.82	-1.9
589,786	-		EFB2_00584	0.82	+0.7
589,786	-		EFB2_00584	0.82	-1.8
589,786	-		EFB2_00584	0.82	-0.0
589,788	+		EFB2_00584	0.82	-0.4
589,788	+		EFB2_00584	0.82	-1.3
589,788	+		EFB2_00584	0.82	-1.5
589,788	+		EFB2_00584	0.82	-0.8
589,788	+		EFB2_00584	0.82	-0.0
589,788	+		EFB2_00584	0.82	-1.8
589,788	+		EFB2_00584	0.82	-1.6
589,788	+		EFB2_00584	0.82	-1.2
589,788	+		EFB2_00584	0.82	+1.1
589,788	+		EFB2_00584	0.82	+2.0
589,788	+		EFB2_00584	0.82	-0.4
589,788	+		EFB2_00584	0.82	-0.0
589,788	+		EFB2_00584	0.82	-1.8
589,788	+		EFB2_00584	0.82	-1.9
589,788	+		EFB2_00584	0.82	-0.3
589,788	+		EFB2_00584	0.82	-2.8
589,788	+		EFB2_00584	0.82	+1.8
589,788	+		EFB2_00584	0.82	-1.8
589,788	+		EFB2_00584	0.82	+0.8
589,788	+		EFB2_00584	0.82	-1.7
589,788	+		EFB2_00584	0.82	-1.7
589,788	+		EFB2_00584	0.82	+0.1
589,788	+		EFB2_00584	0.82	-3.0
589,788	+		EFB2_00584	0.82	-1.5
589,788	+		EFB2_00584	0.82	+0.7
589,788	+		EFB2_00584	0.82	+0.1
589,788	+		EFB2_00584	0.82	-0.2
589,788	+		EFB2_00584	0.82	-1.3
589,788	+		EFB2_00584	0.82	-2.5
589,788	+		EFB2_00584	0.82	+1.4
589,788	+		EFB2_00584	0.82	-1.5
589,788	+		EFB2_00584	0.82	-1.0
589,788	+		EFB2_00584	0.82	-1.3
589,788	+		EFB2_00584	0.82	+0.3
589,788	+		EFB2_00584	0.82	+0.3
589,788	+		EFB2_00584	0.82	-0.8
589,789	-		EFB2_00584	0.82	-1.2
589,789	-		EFB2_00584	0.82	-0.8
589,789	-		EFB2_00584	0.82	-0.6
589,789	-		EFB2_00584	0.82	+1.8
589,789	-		EFB2_00584	0.82	-1.9
589,789	-		EFB2_00584	0.82	-1.5
589,789	-		EFB2_00584	0.82	+0.3
589,789	-		EFB2_00584	0.82	+1.7
589,789	-		EFB2_00584	0.82	+0.2
589,789	-		EFB2_00584	0.82	-2.9
589,789	-		EFB2_00584	0.82	+0.4
589,789	-		EFB2_00584	0.82	+0.8
589,789	-		EFB2_00584	0.82	-0.3
589,789	-		EFB2_00584	0.82	-1.4
589,789	-		EFB2_00584	0.82	+0.7
589,789	-		EFB2_00584	0.82	-1.7
589,789	-		EFB2_00584	0.82	+0.8
589,789	-		EFB2_00584	0.82	-0.3
589,789	-		EFB2_00584	0.82	+2.0
589,789	-		EFB2_00584	0.82	+0.2
589,789	-		EFB2_00584	0.82	-1.3
589,789	-		EFB2_00584	0.82	-0.3
589,789	-		EFB2_00584	0.82	-0.6
589,789	-		EFB2_00584	0.82	-0.0
589,789	-		EFB2_00584	0.82	-2.1
589,789	-		EFB2_00584	0.82	+0.2
589,789	-		EFB2_00584	0.82	+2.4
589,789	-		EFB2_00584	0.82	-0.1
589,789	-		EFB2_00584	0.82	+2.5
589,789	-		EFB2_00584	0.82	+1.2
589,789	-		EFB2_00584	0.82	+1.1
589,789	-		EFB2_00584	0.82	-1.8
589,789	-		EFB2_00584	0.82	-2.3
589,789	-		EFB2_00584	0.82	-1.0
589,789	-		EFB2_00584	0.82	+0.1
589,789	-		EFB2_00584	0.82	-2.3
589,789	-		EFB2_00584	0.82	+0.0
589,789	-		EFB2_00584	0.82	-2.1
589,789	-		EFB2_00584	0.82	-0.4
589,789	-		EFB2_00584	0.82	+1.5
589,789	-		EFB2_00584	0.82	+1.4
589,789	-		EFB2_00584	0.82	+0.8
589,792	+		EFB2_00584	0.82	-2.3
589,792	+		EFB2_00584	0.82	+1.5
589,792	+		EFB2_00584	0.82	-1.1
589,792	+		EFB2_00584	0.82	-0.2
589,792	+		EFB2_00584	0.82	-1.2
589,792	+		EFB2_00584	0.82	-0.2
589,792	+		EFB2_00584	0.82	-2.0
589,792	+		EFB2_00584	0.82	-1.0
589,792	+		EFB2_00584	0.82	-1.0
589,792	+		EFB2_00584	0.82	-1.6
589,793	-		EFB2_00584	0.82	+1.1
589,793	-		EFB2_00584	0.82	+4.6
589,793	-		EFB2_00584	0.82	-0.0
589,793	-		EFB2_00584	0.82	-0.7
589,793	-		EFB2_00584	0.82	-1.3
589,793	-		EFB2_00584	0.82	-0.3
589,793	-		EFB2_00584	0.82	+0.5
589,793	-		EFB2_00584	0.82	-0.3
589,793	-		EFB2_00584	0.82	-0.3
589,844	+		EFB2_00584	0.86	+0.6
589,845	+		EFB2_00584	0.86	-1.0
589,845	+		EFB2_00584	0.86	-1.2
589,846	-		EFB2_00584	0.86	+0.2
589,846	-		EFB2_00584	0.86	-0.0
589,846	-		EFB2_00584	0.86	-2.1
589,846	-		EFB2_00584	0.86	-1.3
589,846	-		EFB2_00584	0.86	-2.5
589,850	+		EFB2_00584	0.86	+0.4
589,850	+		EFB2_00584	0.86	+0.7
589,850	+		EFB2_00584	0.86	-3.4
589,850	+		EFB2_00584	0.86	+2.3
589,850	+		EFB2_00584	0.86	-1.6
589,850	+		EFB2_00584	0.86	-1.0
589,851	-		EFB2_00584	0.86	-2.7
589,851	-		EFB2_00584	0.86	+0.4
589,851	-		EFB2_00584	0.86	-0.1
589,851	-		EFB2_00584	0.86	-1.2
589,851	-		EFB2_00584	0.86	-1.8
589,851	-		EFB2_00584	0.86	-2.6
589,851	-		EFB2_00584	0.86	-1.0
589,851	-		EFB2_00584	0.86	+0.7
589,851	-		EFB2_00584	0.86	+1.0
589,851	-		EFB2_00584	0.86	-1.5
589,851	-		EFB2_00584	0.86	-1.7
589,851	-		EFB2_00584	0.86	-1.0
589,851	-		EFB2_00584	0.86	-1.4
589,851	-		EFB2_00584	0.86	-2.2
589,851	-		EFB2_00584	0.86	+1.2
589,851	-		EFB2_00584	0.86	-1.5
589,889	+		EFB2_00584	0.89	-0.4
589,889	+		EFB2_00584	0.89	-2.2
589,889	+		EFB2_00584	0.89	+1.4
589,889	+		EFB2_00584	0.89	-0.2
589,889	+		EFB2_00584	0.89	-1.6
589,889	+		EFB2_00584	0.89	-1.3
589,889	+		EFB2_00584	0.89	-2.7
589,889	+		EFB2_00584	0.89	+0.4
589,889	+		EFB2_00584	0.89	-0.3
589,889	+		EFB2_00584	0.89	-0.8
589,889	+		EFB2_00584	0.89	+0.6
589,889	+		EFB2_00584	0.89	-1.3
589,890	-		EFB2_00584	0.89	+0.3
589,890	-		EFB2_00584	0.89	-0.0
589,890	-		EFB2_00584	0.89	-3.4
589,890	-		EFB2_00584	0.89	-0.3
589,890	-		EFB2_00584	0.89	-1.0
589,890	-		EFB2_00584	0.89	+0.7
589,890	-		EFB2_00584	0.89	+0.4
589,890	-		EFB2_00584	0.89	+1.3
589,890	-		EFB2_00584	0.89	-2.5
589,890	-		EFB2_00584	0.89	-2.2
589,913	+				+1.5
589,913	+				-1.2
589,913	+				-1.2
589,913	+				-2.5
589,913	+				-1.2
589,913	+				-1.3
589,913	+				-1.2
589,913	+				-0.3
589,913	+				+0.2
589,913	+				+2.0
589,913	+				-3.3
589,914	-				+0.1
589,914	-				-3.4
589,914	-				-2.2
589,914	-				-3.5
589,914	-				+1.7
589,914	-				-1.8
589,914	-				-1.0
589,914	-				-1.3
589,914	-				+0.4
589,914	-				+1.1
589,914	-				+1.4
589,914	-				+0.5
589,914	-				-0.1
589,914	-				+0.8
589,914	-				+0.1
589,914	-				-0.7
589,914	-				-1.9
589,929	+				-0.9
589,930	-				-0.6
589,990	+				-3.1
589,990	+				-1.8
589,990	+				-0.1
589,991	-				-3.3
589,999	+				-0.8
589,999	+				-0.9
590,000	-				-3.5
590,000	-				-1.5
590,000	-				+0.1
590,004	+				-0.5
590,021	+				-2.3
590,021	+				-1.5
590,021	+				-2.9
590,021	+				-3.0
590,021	+				+1.7
590,021	+				-1.3
590,021	+				-1.2
590,021	+				-0.8
590,021	+				+1.2
590,021	+				+1.4
590,021	+				-1.2
590,021	+				-0.6
590,021	+				-2.1
590,022	-				-0.6
590,022	-				-0.3
590,022	-				-1.3
590,022	-				-2.3
590,022	-				+0.0
590,022	-				-0.6
590,022	-				+0.8
590,046	+				+0.1
590,046	+				-2.0
590,046	+				-1.7
590,046	+				-0.9
590,047	-				+0.8
590,047	-				-0.8
590,047	-				-0.6
590,054	+				-1.2
590,054	+				-1.0
590,054	+				+0.9
590,054	+				-2.9
590,054	+				-0.3
590,054	+				+2.5
590,054	+				-0.6
590,054	+				+0.5
590,054	+				-1.1
590,054	+				+0.5
590,054	+				+0.7
590,054	+				-1.6
590,054	+				-0.6
590,054	+				+0.2
590,054	+				-0.0
590,055	-				+0.2
590,055	-				-1.7
590,055	-				+0.3
590,055	-				-1.3
590,055	-				+0.2
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