Experiment: supernatant control, M9 with 0.1X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS02940 and COO64_RS02945 are separated by 81 nucleotides COO64_RS02945 and COO64_RS02950 are separated by 161 nucleotides COO64_RS02950 and COO64_RS02955 are separated by 2 nucleotides
COO64_RS02940: COO64_RS02940 - TonB-dependent receptor, at 60,900 to 63,593
_RS02940
COO64_RS02945: COO64_RS02945 - heme acquisition protein HasA, at 63,675 to 64,292
_RS02945
COO64_RS02950: COO64_RS02950 - type I secretion system permease/ATPase, at 64,454 to 66,223
_RS02950
COO64_RS02955: COO64_RS02955 - HlyD family type I secretion periplasmic adaptor subunit, at 66,226 to 67,560
_RS02955
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.510 kb on + strand at 63.510 kb on + strand at 63.511 kb on - strand at 63.511 kb on - strand at 63.511 kb on - strand at 63.511 kb on - strand at 63.583 kb on - strand at 63.583 kb on - strand at 63.583 kb on - strand at 63.658 kb on + strand at 63.658 kb on + strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.662 kb on + strand at 63.662 kb on + strand at 63.662 kb on + strand at 63.663 kb on - strand at 63.663 kb on - strand at 63.663 kb on - strand at 63.693 kb on + strand at 63.693 kb on + strand at 63.693 kb on + strand at 63.693 kb on + strand at 63.694 kb on - strand at 63.694 kb on - strand at 63.706 kb on - strand at 63.714 kb on + strand at 63.714 kb on + strand at 63.715 kb on - strand at 63.729 kb on + strand at 63.729 kb on + strand at 63.729 kb on + strand at 63.730 kb on - strand at 63.774 kb on + strand, within COO64_RS02945 at 63.775 kb on - strand, within COO64_RS02945 at 63.775 kb on - strand, within COO64_RS02945 at 63.823 kb on - strand, within COO64_RS02945 at 63.853 kb on - strand, within COO64_RS02945 at 63.853 kb on - strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.939 kb on + strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.975 kb on + strand, within COO64_RS02945 at 63.976 kb on - strand, within COO64_RS02945 at 64.101 kb on + strand, within COO64_RS02945 at 64.101 kb on + strand, within COO64_RS02945 at 64.102 kb on - strand, within COO64_RS02945 at 64.488 kb on + strand at 64.488 kb on + strand at 64.488 kb on + strand at 64.489 kb on - strand at 64.489 kb on - strand at 64.489 kb on - strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.595 kb on + strand at 64.595 kb on + strand at 64.595 kb on + strand at 64.596 kb on - strand at 64.767 kb on - strand, within COO64_RS02950 at 64.892 kb on + strand, within COO64_RS02950 at 65.063 kb on - strand, within COO64_RS02950 at 65.223 kb on + strand, within COO64_RS02950 at 65.224 kb on - strand, within COO64_RS02950 at 65.370 kb on - strand, within COO64_RS02950 at 65.370 kb on - strand, within COO64_RS02950 at 65.381 kb on + strand, within COO64_RS02950 at 65.381 kb on + strand, within COO64_RS02950 at 65.381 kb on + strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.546 kb on - strand, within COO64_RS02950 at 65.589 kb on + strand, within COO64_RS02950 at 65.589 kb on + strand, within COO64_RS02950 at 65.589 kb on + strand, within COO64_RS02950 at 65.590 kb on - strand, within COO64_RS02950 at 65.590 kb on - strand, within COO64_RS02950 at 65.590 kb on - strand, within COO64_RS02950 at 65.684 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.826 kb on - strand, within COO64_RS02950 at 65.826 kb on - strand, within COO64_RS02950 at 65.903 kb on + strand, within COO64_RS02950 at 65.983 kb on + strand, within COO64_RS02950 at 66.059 kb on - strand at 66.073 kb on - strand at 66.139 kb on + strand at 66.139 kb on + strand at 66.140 kb on - strand at 66.140 kb on - strand at 66.140 kb on - strand at 66.174 kb on + strand at 66.203 kb on + strand at 66.203 kb on + strand at 66.203 kb on + strand at 66.203 kb on + strand at 66.204 kb on - strand at 66.204 kb on - strand at 66.411 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.697 kb on - strand, within COO64_RS02955 at 66.865 kb on + strand, within COO64_RS02955 at 66.865 kb on + strand, within COO64_RS02955 at 66.866 kb on - strand, within COO64_RS02955 at 66.866 kb on - strand, within COO64_RS02955 at 66.904 kb on + strand, within COO64_RS02955 at 67.009 kb on + strand, within COO64_RS02955 at 67.010 kb on - strand, within COO64_RS02955 at 67.010 kb on - strand, within COO64_RS02955
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.1X LB remove 63,510 + -1.0 63,510 + -0.1 63,511 - -1.1 63,511 - +0.8 63,511 - +0.6 63,511 - -0.1 63,583 - -0.8 63,583 - -0.9 63,583 - +1.3 63,658 + -1.2 63,658 + -1.0 63,659 - +0.6 63,659 - +0.4 63,659 - -1.8 63,662 + -0.2 63,662 + +0.2 63,662 + -0.1 63,663 - +0.8 63,663 - -0.2 63,663 - -0.4 63,693 + -0.3 63,693 + -0.5 63,693 + -0.6 63,693 + -0.2 63,694 - -0.8 63,694 - -0.2 63,706 - -0.3 63,714 + -0.6 63,714 + -0.0 63,715 - -0.9 63,729 + -0.6 63,729 + +0.5 63,729 + +0.4 63,730 - -0.3 63,774 + COO64_RS02945 0.16 -0.5 63,775 - COO64_RS02945 0.16 +0.4 63,775 - COO64_RS02945 0.16 +0.6 63,823 - COO64_RS02945 0.24 -0.2 63,853 - COO64_RS02945 0.29 +0.9 63,853 - COO64_RS02945 0.29 -0.4 63,894 + COO64_RS02945 0.35 -0.2 63,894 + COO64_RS02945 0.35 -1.4 63,894 + COO64_RS02945 0.35 +0.8 63,894 + COO64_RS02945 0.35 +0.6 63,894 + COO64_RS02945 0.35 -0.1 63,894 + COO64_RS02945 0.35 -0.5 63,894 + COO64_RS02945 0.35 +0.0 63,894 + COO64_RS02945 0.35 +0.3 63,894 + COO64_RS02945 0.35 -0.4 63,894 + COO64_RS02945 0.35 -0.4 63,894 + COO64_RS02945 0.35 -0.1 63,894 + COO64_RS02945 0.35 -0.5 63,894 + COO64_RS02945 0.35 +0.6 63,894 + COO64_RS02945 0.35 +0.0 63,895 - COO64_RS02945 0.36 +0.0 63,895 - COO64_RS02945 0.36 +0.5 63,895 - COO64_RS02945 0.36 +0.4 63,895 - COO64_RS02945 0.36 +0.6 63,895 - COO64_RS02945 0.36 -0.4 63,895 - COO64_RS02945 0.36 -1.4 63,895 - COO64_RS02945 0.36 -1.0 63,895 - COO64_RS02945 0.36 +0.0 63,895 - COO64_RS02945 0.36 -0.4 63,895 - COO64_RS02945 0.36 -0.8 63,895 - COO64_RS02945 0.36 -0.0 63,895 - COO64_RS02945 0.36 -0.8 63,895 - COO64_RS02945 0.36 -0.2 63,895 - COO64_RS02945 0.36 -0.4 63,895 - COO64_RS02945 0.36 +1.4 63,895 - COO64_RS02945 0.36 +0.1 63,895 - COO64_RS02945 0.36 -0.4 63,939 + COO64_RS02945 0.43 -0.5 63,940 - COO64_RS02945 0.43 +0.2 63,940 - COO64_RS02945 0.43 -0.3 63,940 - COO64_RS02945 0.43 +0.6 63,940 - COO64_RS02945 0.43 -0.2 63,940 - COO64_RS02945 0.43 -1.4 63,975 + COO64_RS02945 0.49 -0.4 63,976 - COO64_RS02945 0.49 +0.4 64,101 + COO64_RS02945 0.69 +0.2 64,101 + COO64_RS02945 0.69 -0.4 64,102 - COO64_RS02945 0.69 -0.3 64,488 + +0.5 64,488 + +0.5 64,488 + +0.1 64,489 - -0.3 64,489 - -0.6 64,489 - -0.7 64,580 + -0.0 64,580 + -0.4 64,580 + -0.1 64,580 + +0.1 64,580 + -0.2 64,581 - -0.6 64,581 - -0.3 64,581 - +0.3 64,581 - -0.5 64,581 - -0.2 64,581 - +0.8 64,581 - -1.3 64,581 - -0.1 64,581 - +0.2 64,581 - -1.1 64,581 - -1.0 64,595 + +0.7 64,595 + -0.2 64,595 + +0.2 64,596 - +0.7 64,767 - COO64_RS02950 0.18 +0.6 64,892 + COO64_RS02950 0.25 -1.6 65,063 - COO64_RS02950 0.34 +0.3 65,223 + COO64_RS02950 0.43 +0.8 65,224 - COO64_RS02950 0.44 +0.1 65,370 - COO64_RS02950 0.52 -0.5 65,370 - COO64_RS02950 0.52 +0.6 65,381 + COO64_RS02950 0.52 -0.1 65,381 + COO64_RS02950 0.52 +0.8 65,381 + COO64_RS02950 0.52 +0.2 65,382 - COO64_RS02950 0.52 +0.1 65,382 - COO64_RS02950 0.52 +0.6 65,382 - COO64_RS02950 0.52 +0.3 65,382 - COO64_RS02950 0.52 +0.1 65,382 - COO64_RS02950 0.52 -0.2 65,546 - COO64_RS02950 0.62 -0.4 65,589 + COO64_RS02950 0.64 -0.1 65,589 + COO64_RS02950 0.64 +0.6 65,589 + COO64_RS02950 0.64 -0.9 65,590 - COO64_RS02950 0.64 +1.1 65,590 - COO64_RS02950 0.64 +0.4 65,590 - COO64_RS02950 0.64 +0.3 65,684 + COO64_RS02950 0.69 +0.8 65,825 + COO64_RS02950 0.77 +1.0 65,825 + COO64_RS02950 0.77 +0.1 65,825 + COO64_RS02950 0.77 +0.6 65,825 + COO64_RS02950 0.77 -1.5 65,825 + COO64_RS02950 0.77 +1.2 65,826 - COO64_RS02950 0.78 -0.6 65,826 - COO64_RS02950 0.78 -0.8 65,903 + COO64_RS02950 0.82 -0.5 65,983 + COO64_RS02950 0.86 -0.3 66,059 - -0.1 66,073 - -0.8 66,139 + +0.1 66,139 + -1.2 66,140 - -0.1 66,140 - +0.4 66,140 - +1.0 66,174 + -0.5 66,203 + -0.3 66,203 + +0.4 66,203 + -0.2 66,203 + -0.5 66,204 - +0.8 66,204 - +0.7 66,411 + COO64_RS02955 0.14 +0.4 66,556 + COO64_RS02955 0.25 -0.4 66,556 + COO64_RS02955 0.25 -0.3 66,556 + COO64_RS02955 0.25 +0.7 66,556 + COO64_RS02955 0.25 +0.3 66,557 - COO64_RS02955 0.25 +0.1 66,557 - COO64_RS02955 0.25 -0.5 66,557 - COO64_RS02955 0.25 +2.3 66,557 - COO64_RS02955 0.25 +0.5 66,557 - COO64_RS02955 0.25 +0.8 66,557 - COO64_RS02955 0.25 +0.3 66,557 - COO64_RS02955 0.25 +0.1 66,557 - COO64_RS02955 0.25 -0.1 66,557 - COO64_RS02955 0.25 +0.8 66,697 - COO64_RS02955 0.35 +0.5 66,865 + COO64_RS02955 0.48 +0.1 66,865 + COO64_RS02955 0.48 -0.7 66,866 - COO64_RS02955 0.48 +0.8 66,866 - COO64_RS02955 0.48 -0.0 66,904 + COO64_RS02955 0.51 +0.0 67,009 + COO64_RS02955 0.59 +0.2 67,010 - COO64_RS02955 0.59 -0.1 67,010 - COO64_RS02955 0.59 +0.4
Or see this region's nucleotide sequence