Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05389

Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05388 and BACOVA_05389 overlap by 11 nucleotidesBACOVA_05389 and BACOVA_05390 are separated by 20 nucleotidesBACOVA_05390 and BACOVA_05391 are separated by 156 nucleotidesBACOVA_05391 and BACOVA_05392 are separated by 205 nucleotides BACOVA_05388: BACOVA_05388 - YbbR-like protein, at 870,627 to 871,640 _05388 BACOVA_05389: BACOVA_05389 - dephospho-CoA kinase, at 871,630 to 872,247 _05389 BACOVA_05390: BACOVA_05390 - hypothetical protein, at 872,268 to 872,696 _05390 BACOVA_05391: BACOVA_05391 - hypothetical protein, at 872,853 to 872,966 _05391 BACOVA_05392: BACOVA_05392 - hypothetical protein, at 873,172 to 873,420 _05392 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 870.742 kb on + strand, within BACOVA_05388at 870.776 kb on + strand, within BACOVA_05388at 870.814 kb on + strand, within BACOVA_05388at 870.835 kb on + strand, within BACOVA_05388at 870.884 kb on + strand, within BACOVA_05388at 870.890 kb on + strand, within BACOVA_05388at 870.906 kb on + strand, within BACOVA_05388at 870.908 kb on + strand, within BACOVA_05388at 870.954 kb on + strand, within BACOVA_05388at 870.984 kb on + strand, within BACOVA_05388at 871.058 kb on + strand, within BACOVA_05388at 871.058 kb on + strand, within BACOVA_05388at 871.068 kb on + strand, within BACOVA_05388at 871.070 kb on + strand, within BACOVA_05388at 871.074 kb on + strand, within BACOVA_05388at 871.074 kb on + strand, within BACOVA_05388at 871.091 kb on + strand, within BACOVA_05388at 871.099 kb on + strand, within BACOVA_05388at 871.143 kb on + strand, within BACOVA_05388at 871.163 kb on + strand, within BACOVA_05388at 871.185 kb on + strand, within BACOVA_05388at 871.211 kb on + strand, within BACOVA_05388at 871.211 kb on + strand, within BACOVA_05388at 871.211 kb on + strand, within BACOVA_05388at 871.217 kb on + strand, within BACOVA_05388at 871.226 kb on + strand, within BACOVA_05388at 871.347 kb on + strand, within BACOVA_05388at 871.412 kb on + strand, within BACOVA_05388at 871.471 kb on + strand, within BACOVA_05388at 871.536 kb on + strand, within BACOVA_05388at 871.536 kb on + strand, within BACOVA_05388at 871.538 kb on + strand, within BACOVA_05388at 872.193 kb on + strandat 872.204 kb on + strandat 872.208 kb on + strandat 872.209 kb on - strandat 872.260 kb on + strandat 872.261 kb on - strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.262 kb on + strandat 872.263 kb on - strandat 872.263 kb on - strandat 872.263 kb on - strandat 872.264 kb on + strandat 872.264 kb on + strandat 872.264 kb on + strandat 872.264 kb on + strandat 872.265 kb on - strandat 872.265 kb on - strandat 872.311 kb on - strand, within BACOVA_05390at 872.311 kb on - strand, within BACOVA_05390at 872.319 kb on - strand, within BACOVA_05390at 872.385 kb on + strand, within BACOVA_05390at 872.419 kb on + strand, within BACOVA_05390at 872.419 kb on + strand, within BACOVA_05390at 872.419 kb on + strand, within BACOVA_05390at 872.419 kb on - strand, within BACOVA_05390at 872.420 kb on - strand, within BACOVA_05390at 872.420 kb on - strand, within BACOVA_05390at 872.455 kb on - strand, within BACOVA_05390at 872.473 kb on + strand, within BACOVA_05390at 872.474 kb on - strand, within BACOVA_05390at 872.474 kb on - strand, within BACOVA_05390at 872.474 kb on - strand, within BACOVA_05390at 872.505 kb on - strand, within BACOVA_05390at 872.523 kb on - strand, within BACOVA_05390at 872.545 kb on - strand, within BACOVA_05390at 872.557 kb on + strand, within BACOVA_05390at 872.558 kb on - strand, within BACOVA_05390at 872.590 kb on + strand, within BACOVA_05390at 872.590 kb on + strand, within BACOVA_05390at 872.591 kb on - strand, within BACOVA_05390at 872.591 kb on - strand, within BACOVA_05390at 872.591 kb on - strand, within BACOVA_05390at 872.620 kb on - strand, within BACOVA_05390at 872.694 kb on + strandat 872.769 kb on - strandat 872.778 kb on + strandat 872.779 kb on - strandat 872.796 kb on - strandat 872.801 kb on + strandat 872.825 kb on + strandat 872.840 kb on + strandat 872.843 kb on - strandat 872.869 kb on + strand, within BACOVA_05391at 872.869 kb on + strand, within BACOVA_05391at 872.901 kb on - strand, within BACOVA_05391at 872.926 kb on + strand, within BACOVA_05391at 872.927 kb on - strand, within BACOVA_05391at 872.945 kb on - strand, within BACOVA_05391at 872.950 kb on + strand, within BACOVA_05391at 872.953 kb on + strand, within BACOVA_05391at 872.978 kb on + strandat 872.978 kb on + strandat 872.979 kb on - strandat 872.986 kb on + strandat 872.996 kb on + strandat 873.025 kb on + strandat 873.025 kb on + strandat 873.026 kb on - strandat 873.026 kb on - strandat 873.030 kb on - strandat 873.030 kb on - strandat 873.033 kb on + strandat 873.033 kb on + strandat 873.049 kb on - strandat 873.049 kb on - strandat 873.049 kb on - strandat 873.067 kb on - strandat 873.074 kb on - strandat 873.105 kb on + strandat 873.106 kb on - strandat 873.108 kb on + strandat 873.109 kb on - strandat 873.109 kb on - strandat 873.134 kb on + strandat 873.189 kb on + strandat 873.198 kb on - strand, within BACOVA_05392at 873.230 kb on + strand, within BACOVA_05392at 873.230 kb on + strand, within BACOVA_05392at 873.231 kb on - strand, within BACOVA_05392at 873.231 kb on - strand, within BACOVA_05392at 873.231 kb on - strand, within BACOVA_05392

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Per-strain Table

Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
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870,742 + BACOVA_05388 0.11 -1.8
870,776 + BACOVA_05388 0.15 -0.7
870,814 + BACOVA_05388 0.18 -0.4
870,835 + BACOVA_05388 0.21 +1.1
870,884 + BACOVA_05388 0.25 -3.3
870,890 + BACOVA_05388 0.26 +0.1
870,906 + BACOVA_05388 0.28 -0.5
870,908 + BACOVA_05388 0.28 -2.2
870,954 + BACOVA_05388 0.32 -2.1
870,984 + BACOVA_05388 0.35 -0.2
871,058 + BACOVA_05388 0.43 -0.7
871,058 + BACOVA_05388 0.43 -2.3
871,068 + BACOVA_05388 0.43 -1.0
871,070 + BACOVA_05388 0.44 +0.2
871,074 + BACOVA_05388 0.44 -1.7
871,074 + BACOVA_05388 0.44 +0.1
871,091 + BACOVA_05388 0.46 -1.0
871,099 + BACOVA_05388 0.47 -2.0
871,143 + BACOVA_05388 0.51 +1.2
871,163 + BACOVA_05388 0.53 -0.5
871,185 + BACOVA_05388 0.55 -1.4
871,211 + BACOVA_05388 0.58 +0.9
871,211 + BACOVA_05388 0.58 -0.5
871,211 + BACOVA_05388 0.58 +0.1
871,217 + BACOVA_05388 0.58 -1.2
871,226 + BACOVA_05388 0.59 -1.5
871,347 + BACOVA_05388 0.71 -0.4
871,412 + BACOVA_05388 0.77 +0.4
871,471 + BACOVA_05388 0.83 +0.1
871,536 + BACOVA_05388 0.90 -1.1
871,536 + BACOVA_05388 0.90 +0.6
871,538 + BACOVA_05388 0.90 -1.7
872,193 + +1.1
872,204 + +0.3
872,208 + +2.7
872,209 - -0.2
872,260 + -0.9
872,261 - +0.2
872,262 + -0.2
872,262 + -1.3
872,262 + +0.4
872,262 + +0.5
872,262 + -0.2
872,262 + -0.1
872,263 - +0.4
872,263 - +0.4
872,263 - +0.6
872,264 + +0.6
872,264 + +0.1
872,264 + -0.8
872,264 + +1.6
872,265 - -0.1
872,265 - -0.1
872,311 - BACOVA_05390 0.10 +0.4
872,311 - BACOVA_05390 0.10 +0.4
872,319 - BACOVA_05390 0.12 -0.2
872,385 + BACOVA_05390 0.27 -2.5
872,419 + BACOVA_05390 0.35 -1.1
872,419 + BACOVA_05390 0.35 -0.2
872,419 + BACOVA_05390 0.35 +0.1
872,419 - BACOVA_05390 0.35 +0.5
872,420 - BACOVA_05390 0.35 -0.7
872,420 - BACOVA_05390 0.35 -1.2
872,455 - BACOVA_05390 0.44 -1.6
872,473 + BACOVA_05390 0.48 +0.6
872,474 - BACOVA_05390 0.48 -0.9
872,474 - BACOVA_05390 0.48 -1.6
872,474 - BACOVA_05390 0.48 -1.1
872,505 - BACOVA_05390 0.55 -1.1
872,523 - BACOVA_05390 0.59 +1.2
872,545 - BACOVA_05390 0.65 -1.0
872,557 + BACOVA_05390 0.67 -0.2
872,558 - BACOVA_05390 0.68 +0.6
872,590 + BACOVA_05390 0.75 -0.0
872,590 + BACOVA_05390 0.75 +1.4
872,591 - BACOVA_05390 0.75 -0.2
872,591 - BACOVA_05390 0.75 -0.0
872,591 - BACOVA_05390 0.75 +0.4
872,620 - BACOVA_05390 0.82 +1.1
872,694 + +1.1
872,769 - -1.1
872,778 + -0.5
872,779 - +0.3
872,796 - -0.9
872,801 + -1.2
872,825 + -1.9
872,840 + -1.7
872,843 - +0.8
872,869 + BACOVA_05391 0.14 +0.3
872,869 + BACOVA_05391 0.14 -0.5
872,901 - BACOVA_05391 0.42 +0.4
872,926 + BACOVA_05391 0.64 +1.8
872,927 - BACOVA_05391 0.65 -0.1
872,945 - BACOVA_05391 0.81 +1.6
872,950 + BACOVA_05391 0.85 -0.0
872,953 + BACOVA_05391 0.88 +0.5
872,978 + -0.5
872,978 + -1.3
872,979 - -0.3
872,986 + -0.1
872,996 + +0.7
873,025 + -0.3
873,025 + +0.3
873,026 - -0.3
873,026 - +0.1
873,030 - -0.9
873,030 - +0.4
873,033 + +0.7
873,033 + -1.7
873,049 - -0.8
873,049 - +0.9
873,049 - +0.6
873,067 - -0.4
873,074 - -1.1
873,105 + +0.5
873,106 - -1.3
873,108 + +3.2
873,109 - -1.2
873,109 - +0.4
873,134 + +0.6
873,189 + +0.1
873,198 - BACOVA_05392 0.10 -1.4
873,230 + BACOVA_05392 0.23 -0.4
873,230 + BACOVA_05392 0.23 +1.4
873,231 - BACOVA_05392 0.24 +1.4
873,231 - BACOVA_05392 0.24 -1.3
873,231 - BACOVA_05392 0.24 -0.7

Or see this region's nucleotide sequence