Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04693

Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04690 and BACOVA_04691 overlap by 4 nucleotidesBACOVA_04691 and BACOVA_04692 overlap by 10 nucleotidesBACOVA_04692 and BACOVA_04693 overlap by 17 nucleotidesBACOVA_04693 and BACOVA_04694 are separated by 88 nucleotidesBACOVA_04694 and BACOVA_04695 overlap by 26 nucleotides BACOVA_04690: BACOVA_04690 - hypothetical protein, at 59,326 to 59,796 _04690 BACOVA_04691: BACOVA_04691 - hypothetical protein, at 59,793 to 60,194 _04691 BACOVA_04692: BACOVA_04692 - hypothetical protein, at 60,185 to 60,775 _04692 BACOVA_04693: BACOVA_04693 - hypothetical protein, at 60,759 to 61,610 _04693 BACOVA_04694: BACOVA_04694 - hypothetical protein, at 61,699 to 61,854 _04694 BACOVA_04695: BACOVA_04695 - putative plasmid recombination enzyme, at 61,829 to 63,286 _04695 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.806 kb on + strandat 59.824 kb on - strandat 59.824 kb on - strandat 59.885 kb on + strand, within BACOVA_04691at 59.885 kb on + strand, within BACOVA_04691at 59.885 kb on + strand, within BACOVA_04691at 59.963 kb on - strand, within BACOVA_04691at 59.963 kb on - strand, within BACOVA_04691at 60.041 kb on + strand, within BACOVA_04691at 60.076 kb on - strand, within BACOVA_04691at 60.180 kb on + strandat 60.185 kb on - strandat 60.185 kb on - strandat 60.222 kb on + strandat 60.281 kb on + strand, within BACOVA_04692at 60.282 kb on - strand, within BACOVA_04692at 60.320 kb on + strand, within BACOVA_04692at 60.320 kb on + strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.331 kb on - strand, within BACOVA_04692at 60.339 kb on + strand, within BACOVA_04692at 60.340 kb on - strand, within BACOVA_04692at 60.359 kb on + strand, within BACOVA_04692at 60.360 kb on - strand, within BACOVA_04692at 60.363 kb on + strand, within BACOVA_04692at 60.363 kb on + strand, within BACOVA_04692at 60.364 kb on - strand, within BACOVA_04692at 60.364 kb on - strand, within BACOVA_04692at 60.379 kb on + strand, within BACOVA_04692at 60.380 kb on - strand, within BACOVA_04692at 60.400 kb on - strand, within BACOVA_04692at 60.536 kb on + strand, within BACOVA_04692at 60.537 kb on - strand, within BACOVA_04692at 60.557 kb on - strand, within BACOVA_04692at 60.560 kb on + strand, within BACOVA_04692at 60.730 kb on - strandat 60.740 kb on + strandat 60.741 kb on - strandat 60.741 kb on - strandat 60.785 kb on - strandat 60.814 kb on + strandat 60.823 kb on - strandat 60.868 kb on - strand, within BACOVA_04693at 60.930 kb on + strand, within BACOVA_04693at 61.091 kb on - strand, within BACOVA_04693at 61.091 kb on - strand, within BACOVA_04693at 61.163 kb on - strand, within BACOVA_04693at 61.163 kb on - strand, within BACOVA_04693at 61.228 kb on + strand, within BACOVA_04693at 61.681 kb on + strandat 61.683 kb on + strandat 61.684 kb on - strandat 61.736 kb on + strand, within BACOVA_04694at 61.936 kb on + strandat 61.942 kb on + strandat 61.952 kb on + strandat 61.952 kb on + strandat 61.952 kb on + strandat 62.005 kb on - strand, within BACOVA_04695at 62.005 kb on - strand, within BACOVA_04695at 62.005 kb on - strand, within BACOVA_04695at 62.053 kb on - strand, within BACOVA_04695at 62.206 kb on + strand, within BACOVA_04695at 62.207 kb on - strand, within BACOVA_04695at 62.213 kb on - strand, within BACOVA_04695at 62.256 kb on - strand, within BACOVA_04695at 62.256 kb on - strand, within BACOVA_04695at 62.277 kb on - strand, within BACOVA_04695at 62.437 kb on + strand, within BACOVA_04695at 62.462 kb on - strand, within BACOVA_04695at 62.493 kb on + strand, within BACOVA_04695

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Per-strain Table

Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
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59,806 + -0.8
59,824 - +0.1
59,824 - -0.4
59,885 + BACOVA_04691 0.23 +2.5
59,885 + BACOVA_04691 0.23 -1.1
59,885 + BACOVA_04691 0.23 +1.4
59,963 - BACOVA_04691 0.42 +0.1
59,963 - BACOVA_04691 0.42 -1.3
60,041 + BACOVA_04691 0.62 +0.4
60,076 - BACOVA_04691 0.70 -0.5
60,180 + -0.0
60,185 - -0.6
60,185 - -0.8
60,222 + -1.7
60,281 + BACOVA_04692 0.16 +0.5
60,282 - BACOVA_04692 0.16 -1.0
60,320 + BACOVA_04692 0.23 -0.1
60,320 + BACOVA_04692 0.23 +0.3
60,321 - BACOVA_04692 0.23 -0.1
60,321 - BACOVA_04692 0.23 -1.4
60,321 - BACOVA_04692 0.23 +0.4
60,331 - BACOVA_04692 0.25 -0.0
60,339 + BACOVA_04692 0.26 +0.5
60,340 - BACOVA_04692 0.26 +1.0
60,359 + BACOVA_04692 0.29 -0.3
60,360 - BACOVA_04692 0.30 -2.4
60,363 + BACOVA_04692 0.30 -0.6
60,363 + BACOVA_04692 0.30 -0.5
60,364 - BACOVA_04692 0.30 -0.0
60,364 - BACOVA_04692 0.30 -0.3
60,379 + BACOVA_04692 0.33 -1.1
60,380 - BACOVA_04692 0.33 -0.0
60,400 - BACOVA_04692 0.36 -1.1
60,536 + BACOVA_04692 0.59 +0.8
60,537 - BACOVA_04692 0.60 -1.4
60,557 - BACOVA_04692 0.63 -0.4
60,560 + BACOVA_04692 0.63 +0.7
60,730 - -1.5
60,740 + +0.3
60,741 - +0.9
60,741 - -0.0
60,785 - -0.1
60,814 + +0.7
60,823 - -1.6
60,868 - BACOVA_04693 0.13 +0.1
60,930 + BACOVA_04693 0.20 -0.2
61,091 - BACOVA_04693 0.39 -1.0
61,091 - BACOVA_04693 0.39 -1.3
61,163 - BACOVA_04693 0.47 -1.1
61,163 - BACOVA_04693 0.47 -0.3
61,228 + BACOVA_04693 0.55 +1.3
61,681 + -0.1
61,683 + +0.4
61,684 - -2.0
61,736 + BACOVA_04694 0.24 +1.0
61,936 + +1.3
61,942 + +0.3
61,952 + -0.8
61,952 + -0.1
61,952 + +0.7
62,005 - BACOVA_04695 0.12 +0.7
62,005 - BACOVA_04695 0.12 +0.6
62,005 - BACOVA_04695 0.12 -1.0
62,053 - BACOVA_04695 0.15 -2.0
62,206 + BACOVA_04695 0.26 +0.9
62,207 - BACOVA_04695 0.26 +0.1
62,213 - BACOVA_04695 0.26 -0.3
62,256 - BACOVA_04695 0.29 -1.7
62,256 - BACOVA_04695 0.29 -1.2
62,277 - BACOVA_04695 0.31 -1.0
62,437 + BACOVA_04695 0.42 +0.0
62,462 - BACOVA_04695 0.43 +0.5
62,493 + BACOVA_04695 0.46 -1.5

Or see this region's nucleotide sequence