Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04412 and BACOVA_04414 overlap by 4 nucleotides BACOVA_04414 and BACOVA_04415 are separated by 93 nucleotides BACOVA_04415 and BACOVA_04416 are separated by 106 nucleotides
BACOVA_04412: BACOVA_04412 - transporter, major facilitator family protein, at 327,992 to 329,191
_04412
BACOVA_04414: BACOVA_04414 - endonuclease III, at 329,188 to 329,865
_04414
BACOVA_04415: BACOVA_04415 - phosphoglycerate kinase, at 329,959 to 331,218
_04415
BACOVA_04416: BACOVA_04416 - hypothetical protein, at 331,325 to 332,302
_04416
Position (kb) 329
330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.038 kb on - strand, within BACOVA_04412 at 329.071 kb on + strand, within BACOVA_04412 at 329.072 kb on - strand at 329.086 kb on + strand at 329.086 kb on + strand at 329.087 kb on - strand at 329.102 kb on + strand at 329.184 kb on + strand at 329.185 kb on - strand at 329.185 kb on - strand at 329.241 kb on - strand at 329.241 kb on - strand at 329.241 kb on - strand at 329.278 kb on + strand, within BACOVA_04414 at 329.355 kb on + strand, within BACOVA_04414 at 329.413 kb on + strand, within BACOVA_04414 at 329.414 kb on - strand, within BACOVA_04414 at 329.415 kb on + strand, within BACOVA_04414 at 329.415 kb on + strand, within BACOVA_04414 at 329.416 kb on - strand, within BACOVA_04414 at 329.417 kb on + strand, within BACOVA_04414 at 329.417 kb on + strand, within BACOVA_04414 at 329.432 kb on - strand, within BACOVA_04414 at 329.494 kb on - strand, within BACOVA_04414 at 329.600 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.711 kb on + strand, within BACOVA_04414 at 329.749 kb on + strand, within BACOVA_04414 at 329.824 kb on + strand at 329.890 kb on + strand at 329.890 kb on + strand at 329.890 kb on + strand at 331.284 kb on - strand at 331.284 kb on - strand at 331.339 kb on - strand at 331.341 kb on + strand at 331.342 kb on - strand at 331.370 kb on + strand at 331.371 kb on - strand at 331.397 kb on - strand at 331.397 kb on - strand at 331.397 kb on - strand at 331.450 kb on + strand, within BACOVA_04416 at 331.475 kb on - strand, within BACOVA_04416 at 331.477 kb on - strand, within BACOVA_04416 at 331.618 kb on - strand, within BACOVA_04416 at 331.618 kb on - strand, within BACOVA_04416 at 331.618 kb on - strand, within BACOVA_04416 at 331.624 kb on + strand, within BACOVA_04416 at 331.641 kb on + strand, within BACOVA_04416 at 331.769 kb on - strand, within BACOVA_04416 at 331.812 kb on + strand, within BACOVA_04416 at 331.863 kb on - strand, within BACOVA_04416 at 331.921 kb on + strand, within BACOVA_04416 at 331.922 kb on - strand, within BACOVA_04416 at 332.023 kb on - strand, within BACOVA_04416 at 332.036 kb on + strand, within BACOVA_04416 at 332.037 kb on - strand, within BACOVA_04416 at 332.039 kb on - strand, within BACOVA_04416 at 332.039 kb on - strand, within BACOVA_04416 at 332.054 kb on + strand, within BACOVA_04416 at 332.054 kb on + strand, within BACOVA_04416 at 332.054 kb on + strand, within BACOVA_04416 at 332.055 kb on - strand, within BACOVA_04416 at 332.091 kb on + strand, within BACOVA_04416 at 332.092 kb on - strand, within BACOVA_04416 at 332.103 kb on + strand, within BACOVA_04416 at 332.104 kb on - strand, within BACOVA_04416 at 332.104 kb on - strand, within BACOVA_04416 at 332.104 kb on - strand, within BACOVA_04416 at 332.104 kb on - strand, within BACOVA_04416 at 332.193 kb on + strand, within BACOVA_04416 at 332.193 kb on + strand, within BACOVA_04416
Per-strain Table
Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C) remove 329,038 - BACOVA_04412 0.87 -0.2 329,071 + BACOVA_04412 0.90 -0.2 329,072 - +0.5 329,086 + +0.5 329,086 + -0.6 329,087 - -0.2 329,102 + +0.7 329,184 + -1.3 329,185 - +0.4 329,185 - +0.8 329,241 - -1.1 329,241 - -1.4 329,241 - -0.2 329,278 + BACOVA_04414 0.13 +0.7 329,355 + BACOVA_04414 0.25 +0.8 329,413 + BACOVA_04414 0.33 -1.6 329,414 - BACOVA_04414 0.33 -0.8 329,415 + BACOVA_04414 0.33 +0.0 329,415 + BACOVA_04414 0.33 -0.7 329,416 - BACOVA_04414 0.34 -0.9 329,417 + BACOVA_04414 0.34 -2.4 329,417 + BACOVA_04414 0.34 -2.2 329,432 - BACOVA_04414 0.36 -0.1 329,494 - BACOVA_04414 0.45 +0.7 329,600 + BACOVA_04414 0.61 -2.0 329,604 + BACOVA_04414 0.61 +1.3 329,604 + BACOVA_04414 0.61 +2.7 329,604 + BACOVA_04414 0.61 -1.4 329,604 + BACOVA_04414 0.61 -1.1 329,711 + BACOVA_04414 0.77 -1.6 329,749 + BACOVA_04414 0.83 -1.3 329,824 + -0.6 329,890 + -2.6 329,890 + -1.1 329,890 + -1.4 331,284 - +0.7 331,284 - -0.9 331,339 - -0.1 331,341 + -0.1 331,342 - -0.6 331,370 + -1.2 331,371 - -0.4 331,397 - -0.7 331,397 - +0.2 331,397 - -1.4 331,450 + BACOVA_04416 0.13 +1.1 331,475 - BACOVA_04416 0.15 -1.1 331,477 - BACOVA_04416 0.16 +0.1 331,618 - BACOVA_04416 0.30 +0.2 331,618 - BACOVA_04416 0.30 -0.5 331,618 - BACOVA_04416 0.30 -0.6 331,624 + BACOVA_04416 0.31 -0.4 331,641 + BACOVA_04416 0.32 -1.4 331,769 - BACOVA_04416 0.45 +0.9 331,812 + BACOVA_04416 0.50 -1.2 331,863 - BACOVA_04416 0.55 -1.1 331,921 + BACOVA_04416 0.61 +1.5 331,922 - BACOVA_04416 0.61 +1.5 332,023 - BACOVA_04416 0.71 -0.7 332,036 + BACOVA_04416 0.73 +1.3 332,037 - BACOVA_04416 0.73 -0.8 332,039 - BACOVA_04416 0.73 -1.6 332,039 - BACOVA_04416 0.73 +0.2 332,054 + BACOVA_04416 0.75 -1.2 332,054 + BACOVA_04416 0.75 -0.4 332,054 + BACOVA_04416 0.75 +0.9 332,055 - BACOVA_04416 0.75 +0.2 332,091 + BACOVA_04416 0.78 -0.7 332,092 - BACOVA_04416 0.78 +1.2 332,103 + BACOVA_04416 0.80 -1.1 332,104 - BACOVA_04416 0.80 +1.1 332,104 - BACOVA_04416 0.80 -0.5 332,104 - BACOVA_04416 0.80 -0.7 332,104 - BACOVA_04416 0.80 -1.7 332,193 + BACOVA_04416 0.89 +0.9 332,193 + BACOVA_04416 0.89 +0.7
Or see this region's nucleotide sequence