Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03979 and BACOVA_03980 are separated by 91 nucleotides BACOVA_03980 and BACOVA_03981 overlap by 23 nucleotides BACOVA_03981 and BACOVA_03982 are separated by 164 nucleotides
BACOVA_03979: BACOVA_03979 - Sigma-70 region 2, at 308,823 to 309,326
_03979
BACOVA_03980: BACOVA_03980 - monofunctional biosynthetic peptidoglycan transglycosylase, at 309,418 to 310,161
_03980
BACOVA_03981: BACOVA_03981 - OmpA family protein, at 310,139 to 310,855
_03981
BACOVA_03982: BACOVA_03982 - MATE efflux family protein, at 311,020 to 312,372
_03982
Position (kb) 310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.184 kb on - strand, within BACOVA_03979 at 309.185 kb on + strand, within BACOVA_03979 at 309.185 kb on + strand, within BACOVA_03979 at 309.209 kb on - strand, within BACOVA_03979 at 309.257 kb on - strand, within BACOVA_03979 at 309.299 kb on - strand at 309.324 kb on + strand at 309.325 kb on - strand at 309.325 kb on - strand at 309.353 kb on + strand at 309.353 kb on + strand at 309.354 kb on - strand at 309.354 kb on - strand at 309.377 kb on - strand at 309.377 kb on - strand at 309.405 kb on + strand at 309.503 kb on - strand, within BACOVA_03980 at 309.523 kb on + strand, within BACOVA_03980 at 309.524 kb on - strand, within BACOVA_03980 at 309.527 kb on - strand, within BACOVA_03980 at 309.531 kb on - strand, within BACOVA_03980 at 309.531 kb on - strand, within BACOVA_03980 at 309.531 kb on - strand, within BACOVA_03980 at 309.531 kb on - strand, within BACOVA_03980 at 309.586 kb on - strand, within BACOVA_03980 at 309.660 kb on - strand, within BACOVA_03980 at 309.679 kb on + strand, within BACOVA_03980 at 309.680 kb on - strand, within BACOVA_03980 at 309.692 kb on + strand, within BACOVA_03980 at 309.767 kb on - strand, within BACOVA_03980 at 309.787 kb on + strand, within BACOVA_03980 at 309.788 kb on - strand, within BACOVA_03980 at 309.956 kb on - strand, within BACOVA_03980 at 309.996 kb on + strand, within BACOVA_03980 at 309.997 kb on - strand, within BACOVA_03980 at 309.997 kb on - strand, within BACOVA_03980 at 310.029 kb on + strand, within BACOVA_03980 at 310.049 kb on + strand, within BACOVA_03980 at 310.049 kb on + strand, within BACOVA_03980 at 310.060 kb on - strand, within BACOVA_03980 at 310.123 kb on - strand at 310.124 kb on + strand at 310.145 kb on - strand at 310.166 kb on - strand at 310.185 kb on + strand at 310.185 kb on + strand at 310.186 kb on - strand at 310.191 kb on + strand at 310.192 kb on - strand at 310.194 kb on - strand at 310.231 kb on + strand, within BACOVA_03981 at 310.232 kb on - strand, within BACOVA_03981 at 310.272 kb on - strand, within BACOVA_03981 at 310.272 kb on - strand, within BACOVA_03981 at 310.314 kb on + strand, within BACOVA_03981 at 310.410 kb on + strand, within BACOVA_03981 at 310.420 kb on + strand, within BACOVA_03981 at 310.484 kb on - strand, within BACOVA_03981 at 310.496 kb on + strand, within BACOVA_03981 at 310.497 kb on - strand, within BACOVA_03981 at 310.541 kb on + strand, within BACOVA_03981 at 310.665 kb on - strand, within BACOVA_03981 at 310.703 kb on - strand, within BACOVA_03981 at 310.763 kb on - strand, within BACOVA_03981 at 310.774 kb on + strand, within BACOVA_03981 at 310.838 kb on - strand at 310.855 kb on + strand at 310.874 kb on - strand at 310.888 kb on + strand at 310.889 kb on - strand at 310.919 kb on - strand at 310.919 kb on - strand at 310.937 kb on - strand at 310.941 kb on - strand at 310.943 kb on + strand at 310.959 kb on - strand at 311.021 kb on + strand at 311.021 kb on + strand at 311.029 kb on + strand at 311.044 kb on - strand at 311.047 kb on + strand at 311.048 kb on - strand at 311.048 kb on - strand at 311.068 kb on - strand at 311.178 kb on + strand, within BACOVA_03982 at 311.179 kb on - strand, within BACOVA_03982 at 311.185 kb on - strand, within BACOVA_03982 at 311.272 kb on - strand, within BACOVA_03982 at 311.344 kb on + strand, within BACOVA_03982 at 311.436 kb on + strand, within BACOVA_03982 at 311.560 kb on + strand, within BACOVA_03982 at 311.742 kb on - strand, within BACOVA_03982
Per-strain Table
Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C) remove 309,184 - BACOVA_03979 0.72 +1.4 309,185 + BACOVA_03979 0.72 +0.9 309,185 + BACOVA_03979 0.72 +0.3 309,209 - BACOVA_03979 0.77 -0.1 309,257 - BACOVA_03979 0.86 -0.2 309,299 - -0.6 309,324 + -1.4 309,325 - +0.1 309,325 - +1.0 309,353 + +0.1 309,353 + +0.1 309,354 - -0.4 309,354 - +0.7 309,377 - +0.8 309,377 - -0.7 309,405 + -1.9 309,503 - BACOVA_03980 0.11 -0.7 309,523 + BACOVA_03980 0.14 -0.3 309,524 - BACOVA_03980 0.14 -0.3 309,527 - BACOVA_03980 0.15 -1.2 309,531 - BACOVA_03980 0.15 +1.6 309,531 - BACOVA_03980 0.15 -0.6 309,531 - BACOVA_03980 0.15 -0.8 309,531 - BACOVA_03980 0.15 -1.6 309,586 - BACOVA_03980 0.23 +0.5 309,660 - BACOVA_03980 0.33 +1.2 309,679 + BACOVA_03980 0.35 +0.9 309,680 - BACOVA_03980 0.35 -0.7 309,692 + BACOVA_03980 0.37 -1.3 309,767 - BACOVA_03980 0.47 +0.7 309,787 + BACOVA_03980 0.50 +0.6 309,788 - BACOVA_03980 0.50 +1.1 309,956 - BACOVA_03980 0.72 -0.6 309,996 + BACOVA_03980 0.78 +0.8 309,997 - BACOVA_03980 0.78 -0.5 309,997 - BACOVA_03980 0.78 +0.9 310,029 + BACOVA_03980 0.82 +0.6 310,049 + BACOVA_03980 0.85 +0.5 310,049 + BACOVA_03980 0.85 -0.3 310,060 - BACOVA_03980 0.86 +0.5 310,123 - +0.6 310,124 + -0.4 310,145 - +0.7 310,166 - +1.1 310,185 + -1.0 310,185 + -0.2 310,186 - +1.1 310,191 + +0.3 310,192 - -0.3 310,194 - +2.2 310,231 + BACOVA_03981 0.13 -1.6 310,232 - BACOVA_03981 0.13 +0.4 310,272 - BACOVA_03981 0.19 -0.7 310,272 - BACOVA_03981 0.19 +2.2 310,314 + BACOVA_03981 0.24 +0.2 310,410 + BACOVA_03981 0.38 +0.8 310,420 + BACOVA_03981 0.39 -1.1 310,484 - BACOVA_03981 0.48 -0.2 310,496 + BACOVA_03981 0.50 -1.5 310,497 - BACOVA_03981 0.50 +0.2 310,541 + BACOVA_03981 0.56 +1.0 310,665 - BACOVA_03981 0.73 +1.1 310,703 - BACOVA_03981 0.79 +0.5 310,763 - BACOVA_03981 0.87 +1.3 310,774 + BACOVA_03981 0.89 -0.2 310,838 - -0.5 310,855 + -0.8 310,874 - +1.3 310,888 + -1.5 310,889 - +1.2 310,919 - -0.8 310,919 - -1.7 310,937 - -2.6 310,941 - +0.4 310,943 + +0.2 310,959 - +0.9 311,021 + -1.5 311,021 + -0.3 311,029 + +1.2 311,044 - +0.7 311,047 + +1.4 311,048 - +1.1 311,048 - +1.2 311,068 - +0.1 311,178 + BACOVA_03982 0.12 +0.4 311,179 - BACOVA_03982 0.12 -1.2 311,185 - BACOVA_03982 0.12 +1.2 311,272 - BACOVA_03982 0.19 -0.1 311,344 + BACOVA_03982 0.24 +0.9 311,436 + BACOVA_03982 0.31 +0.4 311,560 + BACOVA_03982 0.40 +1.4 311,742 - BACOVA_03982 0.53 +0.1
Or see this region's nucleotide sequence