Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03213

Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03211 and BACOVA_03212 are separated by 81 nucleotidesBACOVA_03212 and BACOVA_03213 are separated by 13 nucleotidesBACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702 _03211 BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293 _03212 BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672 _03213 BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012 _03214 Position (kb) 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 301.358 kb on + strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.359 kb on - strand, within BACOVA_03211at 301.364 kb on + strand, within BACOVA_03211at 301.365 kb on - strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.372 kb on + strand, within BACOVA_03211at 301.373 kb on - strand, within BACOVA_03211at 301.376 kb on - strand, within BACOVA_03211at 301.415 kb on - strand, within BACOVA_03211at 301.417 kb on + strand, within BACOVA_03211at 301.426 kb on - strand, within BACOVA_03211at 301.426 kb on - strand, within BACOVA_03211at 301.449 kb on - strand, within BACOVA_03211at 301.451 kb on + strand, within BACOVA_03211at 301.486 kb on + strand, within BACOVA_03211at 301.557 kb on - strand, within BACOVA_03211at 301.557 kb on - strand, within BACOVA_03211at 301.626 kb on - strandat 301.656 kb on + strandat 301.684 kb on + strandat 301.685 kb on - strandat 301.689 kb on - strandat 301.701 kb on - strandat 301.721 kb on + strandat 301.743 kb on + strandat 301.743 kb on + strandat 301.743 kb on + strandat 301.744 kb on - strandat 301.774 kb on - strandat 301.789 kb on + strandat 301.819 kb on - strandat 301.861 kb on + strand, within BACOVA_03212at 301.862 kb on - strand, within BACOVA_03212at 301.862 kb on - strand, within BACOVA_03212at 301.873 kb on + strand, within BACOVA_03212at 301.897 kb on + strand, within BACOVA_03212at 301.898 kb on - strand, within BACOVA_03212at 301.898 kb on - strand, within BACOVA_03212at 301.903 kb on + strand, within BACOVA_03212at 301.927 kb on + strand, within BACOVA_03212at 302.028 kb on + strand, within BACOVA_03212at 302.028 kb on + strand, within BACOVA_03212at 302.037 kb on + strand, within BACOVA_03212at 302.065 kb on + strand, within BACOVA_03212at 302.079 kb on + strand, within BACOVA_03212at 302.083 kb on + strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.084 kb on - strand, within BACOVA_03212at 302.153 kb on + strand, within BACOVA_03212at 302.162 kb on - strand, within BACOVA_03212at 302.162 kb on - strand, within BACOVA_03212at 302.178 kb on + strand, within BACOVA_03212at 302.181 kb on + strand, within BACOVA_03212at 302.182 kb on - strand, within BACOVA_03212at 302.182 kb on - strand, within BACOVA_03212at 302.185 kb on + strand, within BACOVA_03212at 302.185 kb on + strand, within BACOVA_03212at 302.186 kb on - strand, within BACOVA_03212at 302.275 kb on - strandat 302.281 kb on - strandat 302.281 kb on - strandat 302.346 kb on + strand, within BACOVA_03213at 302.347 kb on - strand, within BACOVA_03213at 302.347 kb on - strand, within BACOVA_03213at 302.351 kb on + strand, within BACOVA_03213at 302.351 kb on + strand, within BACOVA_03213at 302.352 kb on - strand, within BACOVA_03213at 302.357 kb on - strand, within BACOVA_03213at 302.368 kb on - strand, within BACOVA_03213at 302.368 kb on - strand, within BACOVA_03213at 302.395 kb on - strand, within BACOVA_03213at 302.411 kb on - strand, within BACOVA_03213at 302.462 kb on + strand, within BACOVA_03213at 302.464 kb on + strand, within BACOVA_03213at 302.464 kb on + strand, within BACOVA_03213at 302.563 kb on + strand, within BACOVA_03213at 302.564 kb on - strand, within BACOVA_03213at 302.585 kb on + strand, within BACOVA_03213at 302.587 kb on + strand, within BACOVA_03213at 302.588 kb on - strand, within BACOVA_03213at 302.647 kb on + strandat 302.647 kb on + strandat 302.647 kb on + strandat 302.647 kb on + strandat 302.648 kb on - strandat 302.648 kb on - strandat 302.654 kb on + strandat 302.692 kb on - strandat 302.692 kb on - strandat 302.695 kb on + strandat 302.696 kb on - strandat 302.698 kb on + strandat 302.731 kb on + strandat 302.732 kb on - strandat 302.750 kb on + strandat 302.757 kb on + strandat 302.787 kb on + strandat 302.788 kb on - strandat 302.788 kb on - strandat 302.790 kb on + strandat 302.805 kb on - strandat 302.894 kb on - strand, within BACOVA_03214at 302.894 kb on - strand, within BACOVA_03214at 302.894 kb on - strand, within BACOVA_03214at 302.904 kb on - strand, within BACOVA_03214at 302.905 kb on + strand, within BACOVA_03214at 302.905 kb on + strand, within BACOVA_03214at 302.911 kb on - strand, within BACOVA_03214at 302.921 kb on - strand, within BACOVA_03214at 302.964 kb on + strand, within BACOVA_03214at 302.972 kb on - strand, within BACOVA_03214at 302.973 kb on + strand, within BACOVA_03214at 303.004 kb on + strand, within BACOVA_03214at 303.049 kb on + strand, within BACOVA_03214at 303.049 kb on + strand, within BACOVA_03214at 303.050 kb on - strand, within BACOVA_03214at 303.067 kb on - strand, within BACOVA_03214at 303.089 kb on + strand, within BACOVA_03214at 303.120 kb on - strand, within BACOVA_03214at 303.175 kb on - strand, within BACOVA_03214at 303.190 kb on + strand, within BACOVA_03214at 303.210 kb on - strand, within BACOVA_03214at 303.255 kb on - strand, within BACOVA_03214at 303.281 kb on + strand, within BACOVA_03214at 303.291 kb on - strand, within BACOVA_03214at 303.314 kb on - strand, within BACOVA_03214at 303.314 kb on - strand, within BACOVA_03214at 303.324 kb on - strand, within BACOVA_03214at 303.324 kb on - strand, within BACOVA_03214at 303.324 kb on - strand, within BACOVA_03214at 303.326 kb on + strand, within BACOVA_03214at 303.362 kb on - strand, within BACOVA_03214at 303.411 kb on - strand, within BACOVA_03214at 303.435 kb on - strand, within BACOVA_03214at 303.437 kb on + strand, within BACOVA_03214at 303.437 kb on + strand, within BACOVA_03214at 303.438 kb on - strand, within BACOVA_03214at 303.438 kb on - strand, within BACOVA_03214at 303.439 kb on + strand, within BACOVA_03214at 303.439 kb on + strand, within BACOVA_03214at 303.470 kb on + strand, within BACOVA_03214at 303.473 kb on - strand, within BACOVA_03214at 303.473 kb on - strand, within BACOVA_03214at 303.498 kb on - strand, within BACOVA_03214at 303.547 kb on - strand, within BACOVA_03214at 303.615 kb on + strand, within BACOVA_03214at 303.615 kb on + strand, within BACOVA_03214at 303.615 kb on + strand, within BACOVA_03214at 303.672 kb on - strand, within BACOVA_03214

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
remove
301,358 + BACOVA_03211 0.67 -0.4
301,359 - BACOVA_03211 0.67 +0.6
301,359 - BACOVA_03211 0.67 -0.6
301,359 - BACOVA_03211 0.67 +2.0
301,364 + BACOVA_03211 0.68 +0.7
301,365 - BACOVA_03211 0.68 +1.7
301,372 + BACOVA_03211 0.69 +0.1
301,372 + BACOVA_03211 0.69 -0.2
301,372 + BACOVA_03211 0.69 +0.6
301,373 - BACOVA_03211 0.69 -0.4
301,376 - BACOVA_03211 0.69 -1.3
301,415 - BACOVA_03211 0.73 +0.5
301,417 + BACOVA_03211 0.73 -0.5
301,426 - BACOVA_03211 0.74 +0.3
301,426 - BACOVA_03211 0.74 +1.9
301,449 - BACOVA_03211 0.76 -0.5
301,451 + BACOVA_03211 0.76 +0.6
301,486 + BACOVA_03211 0.79 -0.6
301,557 - BACOVA_03211 0.86 -0.8
301,557 - BACOVA_03211 0.86 -1.6
301,626 - -0.7
301,656 + +0.5
301,684 + -0.0
301,685 - -2.1
301,689 - -0.5
301,701 - -1.5
301,721 + -0.2
301,743 + +1.5
301,743 + -0.8
301,743 + +0.1
301,744 - +1.4
301,774 - +1.4
301,789 + +0.3
301,819 - +0.2
301,861 + BACOVA_03212 0.15 -0.0
301,862 - BACOVA_03212 0.15 -0.9
301,862 - BACOVA_03212 0.15 -0.0
301,873 + BACOVA_03212 0.17 -0.3
301,897 + BACOVA_03212 0.22 -0.2
301,898 - BACOVA_03212 0.22 -0.2
301,898 - BACOVA_03212 0.22 +1.3
301,903 + BACOVA_03212 0.23 -0.1
301,927 + BACOVA_03212 0.28 -2.1
302,028 + BACOVA_03212 0.48 -0.9
302,028 + BACOVA_03212 0.48 +0.6
302,037 + BACOVA_03212 0.50 +1.4
302,065 + BACOVA_03212 0.55 -0.8
302,079 + BACOVA_03212 0.58 +0.3
302,083 + BACOVA_03212 0.59 -1.8
302,084 - BACOVA_03212 0.59 -0.7
302,084 - BACOVA_03212 0.59 -0.2
302,084 - BACOVA_03212 0.59 +0.3
302,084 - BACOVA_03212 0.59 -0.3
302,153 + BACOVA_03212 0.72 +0.3
302,162 - BACOVA_03212 0.74 +0.3
302,162 - BACOVA_03212 0.74 +0.4
302,178 + BACOVA_03212 0.77 -0.8
302,181 + BACOVA_03212 0.78 -2.5
302,182 - BACOVA_03212 0.78 +0.8
302,182 - BACOVA_03212 0.78 -1.5
302,185 + BACOVA_03212 0.79 -1.2
302,185 + BACOVA_03212 0.79 +1.8
302,186 - BACOVA_03212 0.79 -0.4
302,275 - -0.3
302,281 - -0.7
302,281 - -3.5
302,346 + BACOVA_03213 0.11 -0.4
302,347 - BACOVA_03213 0.11 +1.1
302,347 - BACOVA_03213 0.11 +1.3
302,351 + BACOVA_03213 0.12 -0.8
302,351 + BACOVA_03213 0.12 -0.5
302,352 - BACOVA_03213 0.12 -1.0
302,357 - BACOVA_03213 0.14 +0.2
302,368 - BACOVA_03213 0.17 -0.4
302,368 - BACOVA_03213 0.17 -0.5
302,395 - BACOVA_03213 0.24 -1.3
302,411 - BACOVA_03213 0.28 +0.9
302,462 + BACOVA_03213 0.42 -0.0
302,464 + BACOVA_03213 0.43 +0.3
302,464 + BACOVA_03213 0.43 +1.0
302,563 + BACOVA_03213 0.70 -1.9
302,564 - BACOVA_03213 0.70 -0.6
302,585 + BACOVA_03213 0.76 -0.3
302,587 + BACOVA_03213 0.77 +1.0
302,588 - BACOVA_03213 0.77 +2.8
302,647 + +0.6
302,647 + -0.5
302,647 + -0.2
302,647 + +0.7
302,648 - -1.3
302,648 - -2.0
302,654 + +1.5
302,692 - -0.2
302,692 - -2.0
302,695 + +1.2
302,696 - -1.1
302,698 + -0.1
302,731 + +0.1
302,732 - +0.7
302,750 + +0.3
302,757 + -1.2
302,787 + -0.0
302,788 - -0.2
302,788 - +0.1
302,790 + -1.3
302,805 - -0.3
302,894 - BACOVA_03214 0.15 +1.0
302,894 - BACOVA_03214 0.15 +0.4
302,894 - BACOVA_03214 0.15 -0.6
302,904 - BACOVA_03214 0.15 -1.0
302,905 + BACOVA_03214 0.15 +0.7
302,905 + BACOVA_03214 0.15 -1.0
302,911 - BACOVA_03214 0.16 +0.1
302,921 - BACOVA_03214 0.17 +0.4
302,964 + BACOVA_03214 0.20 -0.7
302,972 - BACOVA_03214 0.21 -0.2
302,973 + BACOVA_03214 0.21 +1.6
303,004 + BACOVA_03214 0.23 -0.0
303,049 + BACOVA_03214 0.26 +0.3
303,049 + BACOVA_03214 0.26 +0.4
303,050 - BACOVA_03214 0.27 -1.6
303,067 - BACOVA_03214 0.28 -0.1
303,089 + BACOVA_03214 0.30 -0.4
303,120 - BACOVA_03214 0.32 -0.8
303,175 - BACOVA_03214 0.36 +0.9
303,190 + BACOVA_03214 0.37 +0.2
303,210 - BACOVA_03214 0.39 +0.3
303,255 - BACOVA_03214 0.42 +0.7
303,281 + BACOVA_03214 0.44 -1.9
303,291 - BACOVA_03214 0.45 -1.1
303,314 - BACOVA_03214 0.47 +0.4
303,314 - BACOVA_03214 0.47 +1.3
303,324 - BACOVA_03214 0.47 -0.2
303,324 - BACOVA_03214 0.47 -0.4
303,324 - BACOVA_03214 0.47 -0.9
303,326 + BACOVA_03214 0.48 -0.7
303,362 - BACOVA_03214 0.50 -1.2
303,411 - BACOVA_03214 0.54 +1.0
303,435 - BACOVA_03214 0.56 +0.4
303,437 + BACOVA_03214 0.56 +0.7
303,437 + BACOVA_03214 0.56 -1.8
303,438 - BACOVA_03214 0.56 -1.4
303,438 - BACOVA_03214 0.56 -1.7
303,439 + BACOVA_03214 0.56 -0.9
303,439 + BACOVA_03214 0.56 -1.3
303,470 + BACOVA_03214 0.59 +1.1
303,473 - BACOVA_03214 0.59 -1.4
303,473 - BACOVA_03214 0.59 +1.1
303,498 - BACOVA_03214 0.61 -2.1
303,547 - BACOVA_03214 0.64 -0.2
303,615 + BACOVA_03214 0.70 -0.8
303,615 + BACOVA_03214 0.70 -0.5
303,615 + BACOVA_03214 0.70 +1.1
303,672 - BACOVA_03214 0.74 +0.4

Or see this region's nucleotide sequence