Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02441

Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02440 and BACOVA_02441 are separated by 175 nucleotidesBACOVA_02441 and BACOVA_02442 are separated by 22 nucleotides BACOVA_02440: BACOVA_02440 - TonB-dependent receptor, at 203,863 to 205,971 _02440 BACOVA_02441: BACOVA_02441 - aspartate 4-decarboxylase, at 206,147 to 207,790 _02441 BACOVA_02442: BACOVA_02442 - aspartate-alanine antiporter, at 207,813 to 209,507 _02442 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1at 205.186 kb on + strand, within BACOVA_02440at 205.188 kb on + strand, within BACOVA_02440at 205.188 kb on + strand, within BACOVA_02440at 205.188 kb on + strand, within BACOVA_02440at 205.188 kb on + strand, within BACOVA_02440at 205.188 kb on + strand, within BACOVA_02440at 205.240 kb on + strand, within BACOVA_02440at 205.270 kb on - strand, within BACOVA_02440at 205.277 kb on - strand, within BACOVA_02440at 205.306 kb on - strand, within BACOVA_02440at 205.313 kb on - strand, within BACOVA_02440at 205.313 kb on - strand, within BACOVA_02440at 205.317 kb on + strand, within BACOVA_02440at 205.333 kb on + strand, within BACOVA_02440at 205.352 kb on - strand, within BACOVA_02440at 205.353 kb on + strand, within BACOVA_02440at 205.353 kb on + strand, within BACOVA_02440at 205.353 kb on + strand, within BACOVA_02440at 205.354 kb on - strand, within BACOVA_02440at 205.354 kb on - strand, within BACOVA_02440at 205.369 kb on + strand, within BACOVA_02440at 205.369 kb on + strand, within BACOVA_02440at 205.389 kb on + strand, within BACOVA_02440at 205.393 kb on + strand, within BACOVA_02440at 205.396 kb on - strand, within BACOVA_02440at 205.453 kb on + strand, within BACOVA_02440at 205.453 kb on + strand, within BACOVA_02440at 205.453 kb on + strand, within BACOVA_02440at 205.454 kb on - strand, within BACOVA_02440at 205.539 kb on + strand, within BACOVA_02440at 205.542 kb on + strand, within BACOVA_02440at 205.542 kb on + strand, within BACOVA_02440at 205.543 kb on - strand, within BACOVA_02440at 205.543 kb on - strand, within BACOVA_02440at 205.610 kb on + strand, within BACOVA_02440at 205.610 kb on + strand, within BACOVA_02440at 205.611 kb on - strand, within BACOVA_02440at 205.611 kb on - strand, within BACOVA_02440at 205.698 kb on + strand, within BACOVA_02440at 205.787 kb on + strandat 205.807 kb on - strandat 205.808 kb on + strandat 205.808 kb on + strandat 205.809 kb on - strandat 205.809 kb on - strandat 205.809 kb on - strandat 205.859 kb on + strandat 205.860 kb on - strandat 205.860 kb on - strandat 205.870 kb on + strandat 205.872 kb on + strandat 205.873 kb on - strandat 205.911 kb on + strandat 205.925 kb on - strandat 205.949 kb on + strandat 205.949 kb on + strandat 205.950 kb on - strandat 205.950 kb on - strandat 205.950 kb on - strandat 205.966 kb on - strandat 205.993 kb on + strandat 205.993 kb on + strandat 206.128 kb on - strandat 206.143 kb on + strandat 206.143 kb on + strandat 206.144 kb on - strandat 206.144 kb on - strandat 206.244 kb on - strandat 206.347 kb on - strand, within BACOVA_02441at 206.361 kb on + strand, within BACOVA_02441at 206.366 kb on - strand, within BACOVA_02441at 206.366 kb on - strand, within BACOVA_02441at 206.407 kb on + strand, within BACOVA_02441at 206.421 kb on + strand, within BACOVA_02441at 206.448 kb on - strand, within BACOVA_02441at 206.464 kb on + strand, within BACOVA_02441at 206.497 kb on + strand, within BACOVA_02441at 206.498 kb on - strand, within BACOVA_02441at 206.498 kb on - strand, within BACOVA_02441at 206.520 kb on + strand, within BACOVA_02441at 206.521 kb on - strand, within BACOVA_02441at 206.599 kb on + strand, within BACOVA_02441at 206.697 kb on - strand, within BACOVA_02441at 206.785 kb on + strand, within BACOVA_02441at 206.825 kb on - strand, within BACOVA_02441at 206.825 kb on - strand, within BACOVA_02441at 206.825 kb on - strand, within BACOVA_02441at 206.825 kb on - strand, within BACOVA_02441at 206.877 kb on + strand, within BACOVA_02441at 206.964 kb on + strand, within BACOVA_02441at 206.965 kb on - strand, within BACOVA_02441at 206.965 kb on - strand, within BACOVA_02441at 207.030 kb on - strand, within BACOVA_02441at 207.032 kb on - strand, within BACOVA_02441at 207.044 kb on - strand, within BACOVA_02441at 207.044 kb on - strand, within BACOVA_02441at 207.045 kb on + strand, within BACOVA_02441at 207.046 kb on - strand, within BACOVA_02441at 207.055 kb on + strand, within BACOVA_02441at 207.056 kb on - strand, within BACOVA_02441at 207.136 kb on + strand, within BACOVA_02441at 207.138 kb on + strand, within BACOVA_02441at 207.138 kb on + strand, within BACOVA_02441at 207.139 kb on - strand, within BACOVA_02441at 207.139 kb on - strand, within BACOVA_02441at 207.139 kb on - strand, within BACOVA_02441at 207.139 kb on - strand, within BACOVA_02441at 207.169 kb on + strand, within BACOVA_02441at 207.170 kb on - strand, within BACOVA_02441at 207.236 kb on - strand, within BACOVA_02441at 207.307 kb on - strand, within BACOVA_02441at 207.321 kb on - strand, within BACOVA_02441at 207.321 kb on - strand, within BACOVA_02441at 207.341 kb on - strand, within BACOVA_02441at 207.433 kb on - strand, within BACOVA_02441at 207.438 kb on + strand, within BACOVA_02441at 207.536 kb on + strand, within BACOVA_02441at 207.638 kb on - strandat 207.661 kb on + strandat 207.662 kb on - strandat 207.662 kb on - strandat 207.668 kb on + strandat 207.680 kb on - strandat 207.773 kb on - strandat 207.819 kb on - strandat 207.822 kb on + strandat 207.822 kb on + strandat 207.858 kb on - strandat 207.871 kb on + strandat 207.872 kb on - strandat 207.872 kb on - strandat 207.881 kb on + strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.888 kb on + strandat 207.888 kb on + strandat 207.924 kb on - strandat 207.948 kb on - strandat 207.962 kb on + strandat 208.059 kb on - strand, within BACOVA_02442at 208.074 kb on + strand, within BACOVA_02442at 208.147 kb on - strand, within BACOVA_02442at 208.152 kb on - strand, within BACOVA_02442at 208.340 kb on + strand, within BACOVA_02442at 208.406 kb on + strand, within BACOVA_02442at 208.487 kb on + strand, within BACOVA_02442at 208.512 kb on - strand, within BACOVA_02442at 208.675 kb on - strand, within BACOVA_02442at 208.714 kb on - strand, within BACOVA_02442at 208.714 kb on - strand, within BACOVA_02442at 208.777 kb on - strand, within BACOVA_02442at 208.780 kb on + strand, within BACOVA_02442at 208.781 kb on - strand, within BACOVA_02442

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Per-strain Table

Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
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205,186 + BACOVA_02440 0.63 +1.2
205,188 + BACOVA_02440 0.63 -0.8
205,188 + BACOVA_02440 0.63 -0.2
205,188 + BACOVA_02440 0.63 -1.8
205,188 + BACOVA_02440 0.63 +0.1
205,188 + BACOVA_02440 0.63 +0.3
205,240 + BACOVA_02440 0.65 -0.8
205,270 - BACOVA_02440 0.67 +0.8
205,277 - BACOVA_02440 0.67 +0.2
205,306 - BACOVA_02440 0.68 -0.8
205,313 - BACOVA_02440 0.69 -0.0
205,313 - BACOVA_02440 0.69 -0.8
205,317 + BACOVA_02440 0.69 +0.8
205,333 + BACOVA_02440 0.70 +0.8
205,352 - BACOVA_02440 0.71 +1.3
205,353 + BACOVA_02440 0.71 -1.0
205,353 + BACOVA_02440 0.71 -0.0
205,353 + BACOVA_02440 0.71 +0.3
205,354 - BACOVA_02440 0.71 +1.1
205,354 - BACOVA_02440 0.71 +0.6
205,369 + BACOVA_02440 0.71 +0.8
205,369 + BACOVA_02440 0.71 -1.5
205,389 + BACOVA_02440 0.72 +1.0
205,393 + BACOVA_02440 0.73 -0.2
205,396 - BACOVA_02440 0.73 -0.8
205,453 + BACOVA_02440 0.75 +1.3
205,453 + BACOVA_02440 0.75 -1.5
205,453 + BACOVA_02440 0.75 +0.2
205,454 - BACOVA_02440 0.75 -2.3
205,539 + BACOVA_02440 0.79 -0.4
205,542 + BACOVA_02440 0.80 -1.3
205,542 + BACOVA_02440 0.80 -0.7
205,543 - BACOVA_02440 0.80 +0.1
205,543 - BACOVA_02440 0.80 +0.5
205,610 + BACOVA_02440 0.83 -0.8
205,610 + BACOVA_02440 0.83 -1.4
205,611 - BACOVA_02440 0.83 -1.9
205,611 - BACOVA_02440 0.83 +0.7
205,698 + BACOVA_02440 0.87 +0.6
205,787 + -0.3
205,807 - -0.4
205,808 + +0.3
205,808 + +1.5
205,809 - -1.5
205,809 - -2.9
205,809 - +0.8
205,859 + +1.3
205,860 - -0.1
205,860 - +0.8
205,870 + -2.9
205,872 + +0.7
205,873 - -0.2
205,911 + -1.6
205,925 - +0.2
205,949 + -0.5
205,949 + +0.1
205,950 - -1.1
205,950 - -1.7
205,950 - +0.8
205,966 - -0.9
205,993 + +0.4
205,993 + +0.4
206,128 - +0.4
206,143 + -0.4
206,143 + -0.3
206,144 - +0.8
206,144 - +0.5
206,244 - +0.2
206,347 - BACOVA_02441 0.12 -1.0
206,361 + BACOVA_02441 0.13 +1.6
206,366 - BACOVA_02441 0.13 +0.1
206,366 - BACOVA_02441 0.13 +0.6
206,407 + BACOVA_02441 0.16 +1.2
206,421 + BACOVA_02441 0.17 +0.9
206,448 - BACOVA_02441 0.18 -1.6
206,464 + BACOVA_02441 0.19 -0.2
206,497 + BACOVA_02441 0.21 +0.6
206,498 - BACOVA_02441 0.21 -0.6
206,498 - BACOVA_02441 0.21 -0.3
206,520 + BACOVA_02441 0.23 -0.0
206,521 - BACOVA_02441 0.23 +1.7
206,599 + BACOVA_02441 0.27 +0.4
206,697 - BACOVA_02441 0.33 +0.8
206,785 + BACOVA_02441 0.39 -0.6
206,825 - BACOVA_02441 0.41 +0.1
206,825 - BACOVA_02441 0.41 +0.4
206,825 - BACOVA_02441 0.41 -1.9
206,825 - BACOVA_02441 0.41 -0.0
206,877 + BACOVA_02441 0.44 +0.3
206,964 + BACOVA_02441 0.50 -0.7
206,965 - BACOVA_02441 0.50 -0.5
206,965 - BACOVA_02441 0.50 +0.2
207,030 - BACOVA_02441 0.54 +0.7
207,032 - BACOVA_02441 0.54 -1.0
207,044 - BACOVA_02441 0.55 -0.6
207,044 - BACOVA_02441 0.55 +0.3
207,045 + BACOVA_02441 0.55 +1.5
207,046 - BACOVA_02441 0.55 -0.3
207,055 + BACOVA_02441 0.55 +0.6
207,056 - BACOVA_02441 0.55 -0.6
207,136 + BACOVA_02441 0.60 +0.9
207,138 + BACOVA_02441 0.60 -1.5
207,138 + BACOVA_02441 0.60 +1.4
207,139 - BACOVA_02441 0.60 -0.3
207,139 - BACOVA_02441 0.60 -1.3
207,139 - BACOVA_02441 0.60 -0.7
207,139 - BACOVA_02441 0.60 -0.3
207,169 + BACOVA_02441 0.62 -0.0
207,170 - BACOVA_02441 0.62 +1.2
207,236 - BACOVA_02441 0.66 -0.2
207,307 - BACOVA_02441 0.71 -0.3
207,321 - BACOVA_02441 0.71 -0.7
207,321 - BACOVA_02441 0.71 -0.1
207,341 - BACOVA_02441 0.73 -0.1
207,433 - BACOVA_02441 0.78 +0.4
207,438 + BACOVA_02441 0.79 +0.8
207,536 + BACOVA_02441 0.84 +0.6
207,638 - +0.4
207,661 + +0.7
207,662 - +0.3
207,662 - -0.6
207,668 + +0.2
207,680 - -0.7
207,773 - -0.0
207,819 - -0.2
207,822 + +0.6
207,822 + -1.5
207,858 - -0.4
207,871 + +0.8
207,872 - -0.2
207,872 - -1.3
207,881 + +0.6
207,882 - +0.8
207,882 - -1.3
207,882 - -1.4
207,888 + +1.6
207,888 + +1.6
207,924 - +0.2
207,948 - +0.3
207,962 + +0.7
208,059 - BACOVA_02442 0.15 -1.6
208,074 + BACOVA_02442 0.15 +0.2
208,147 - BACOVA_02442 0.20 +0.2
208,152 - BACOVA_02442 0.20 -0.2
208,340 + BACOVA_02442 0.31 +0.7
208,406 + BACOVA_02442 0.35 -0.2
208,487 + BACOVA_02442 0.40 +1.7
208,512 - BACOVA_02442 0.41 -0.5
208,675 - BACOVA_02442 0.51 +1.6
208,714 - BACOVA_02442 0.53 +1.2
208,714 - BACOVA_02442 0.53 -0.2
208,777 - BACOVA_02442 0.57 -1.1
208,780 + BACOVA_02442 0.57 +0.4
208,781 - BACOVA_02442 0.57 -0.1

Or see this region's nucleotide sequence