Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02312

Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02308 and BACOVA_02309 are separated by 67 nucleotidesBACOVA_02309 and BACOVA_02310 are separated by 12 nucleotidesBACOVA_02310 and BACOVA_02312 are separated by 23 nucleotidesBACOVA_02312 and BACOVA_02311 overlap by 68 nucleotidesBACOVA_02311 and BACOVA_02313 are separated by 59 nucleotidesBACOVA_02313 and BACOVA_02314 are separated by 82 nucleotides BACOVA_02308: BACOVA_02308 - protein TraX, at 76,784 to 77,491 _02308 BACOVA_02309: BACOVA_02309 - DNA-binding helix-turn-helix protein, at 77,559 to 77,843 _02309 BACOVA_02310: BACOVA_02310 - hypothetical protein, at 77,856 to 78,038 _02310 BACOVA_02312: BACOVA_02312 - hypothetical protein, at 78,062 to 78,805 _02312 BACOVA_02311: BACOVA_02311 - hypothetical protein, at 78,738 to 78,881 _02311 BACOVA_02313: BACOVA_02313 - hypothetical protein, at 78,941 to 79,579 _02313 BACOVA_02314: BACOVA_02314 - hypothetical protein, at 79,662 to 80,447 _02314 Position (kb) 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.083 kb on + strand, within BACOVA_02308at 77.145 kb on + strand, within BACOVA_02308at 77.182 kb on - strand, within BACOVA_02308at 77.182 kb on - strand, within BACOVA_02308at 77.187 kb on + strand, within BACOVA_02308at 77.209 kb on - strand, within BACOVA_02308at 77.235 kb on + strand, within BACOVA_02308at 77.236 kb on - strand, within BACOVA_02308at 77.244 kb on + strand, within BACOVA_02308at 77.245 kb on - strand, within BACOVA_02308at 77.255 kb on + strand, within BACOVA_02308at 77.256 kb on - strand, within BACOVA_02308at 77.279 kb on + strand, within BACOVA_02308at 77.280 kb on - strand, within BACOVA_02308at 77.296 kb on + strand, within BACOVA_02308at 77.332 kb on - strand, within BACOVA_02308at 77.369 kb on - strand, within BACOVA_02308at 77.382 kb on + strand, within BACOVA_02308at 77.383 kb on - strand, within BACOVA_02308at 77.384 kb on + strand, within BACOVA_02308at 77.407 kb on - strand, within BACOVA_02308at 77.413 kb on + strand, within BACOVA_02308at 77.413 kb on + strand, within BACOVA_02308at 77.459 kb on - strandat 77.497 kb on + strandat 77.498 kb on - strandat 77.507 kb on - strandat 77.507 kb on - strandat 77.520 kb on - strandat 77.586 kb on + strandat 77.607 kb on - strand, within BACOVA_02309at 77.665 kb on + strand, within BACOVA_02309at 77.666 kb on - strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.744 kb on + strand, within BACOVA_02309at 77.836 kb on - strandat 77.880 kb on + strand, within BACOVA_02310at 77.882 kb on + strand, within BACOVA_02310at 78.000 kb on - strand, within BACOVA_02310at 78.009 kb on + strand, within BACOVA_02310at 78.122 kb on + strandat 78.124 kb on + strandat 78.125 kb on - strandat 78.130 kb on - strandat 78.144 kb on + strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.145 kb on - strand, within BACOVA_02312at 78.148 kb on + strand, within BACOVA_02312at 78.148 kb on + strand, within BACOVA_02312at 78.155 kb on + strand, within BACOVA_02312at 78.155 kb on + strand, within BACOVA_02312at 78.156 kb on - strand, within BACOVA_02312at 78.156 kb on - strand, within BACOVA_02312at 78.156 kb on - strand, within BACOVA_02312at 78.189 kb on + strand, within BACOVA_02312at 78.213 kb on + strand, within BACOVA_02312at 78.213 kb on + strand, within BACOVA_02312at 78.213 kb on + strand, within BACOVA_02312at 78.214 kb on - strand, within BACOVA_02312at 78.233 kb on + strand, within BACOVA_02312at 78.234 kb on - strand, within BACOVA_02312at 78.234 kb on - strand, within BACOVA_02312at 78.234 kb on - strand, within BACOVA_02312at 78.282 kb on + strand, within BACOVA_02312at 78.282 kb on + strand, within BACOVA_02312at 78.283 kb on - strand, within BACOVA_02312at 78.287 kb on - strand, within BACOVA_02312at 78.287 kb on - strand, within BACOVA_02312at 78.292 kb on + strand, within BACOVA_02312at 78.331 kb on + strand, within BACOVA_02312at 78.335 kb on + strand, within BACOVA_02312at 78.373 kb on + strand, within BACOVA_02312at 78.384 kb on - strand, within BACOVA_02312at 78.418 kb on + strand, within BACOVA_02312at 78.428 kb on + strand, within BACOVA_02312at 78.491 kb on - strand, within BACOVA_02312at 78.502 kb on + strand, within BACOVA_02312at 78.518 kb on - strand, within BACOVA_02312at 78.521 kb on + strand, within BACOVA_02312at 78.571 kb on - strand, within BACOVA_02312at 78.591 kb on + strand, within BACOVA_02312at 78.592 kb on - strand, within BACOVA_02312at 78.626 kb on + strand, within BACOVA_02312at 78.629 kb on - strand, within BACOVA_02312at 78.643 kb on + strand, within BACOVA_02312at 78.644 kb on - strand, within BACOVA_02312at 78.653 kb on - strand, within BACOVA_02312at 78.687 kb on - strand, within BACOVA_02312at 78.702 kb on - strand, within BACOVA_02312at 78.709 kb on + strand, within BACOVA_02312at 78.722 kb on + strand, within BACOVA_02312at 78.722 kb on + strand, within BACOVA_02312at 78.786 kb on - strandat 78.786 kb on - strandat 78.838 kb on + strand, within BACOVA_02311at 78.889 kb on - strandat 78.926 kb on - strandat 78.945 kb on - strandat 78.945 kb on - strandat 78.962 kb on + strandat 78.966 kb on - strandat 78.977 kb on - strandat 79.036 kb on + strand, within BACOVA_02313at 79.037 kb on - strand, within BACOVA_02313at 79.038 kb on + strand, within BACOVA_02313at 79.039 kb on - strand, within BACOVA_02313at 79.049 kb on + strand, within BACOVA_02313at 79.057 kb on + strand, within BACOVA_02313at 79.057 kb on + strand, within BACOVA_02313at 79.057 kb on + strand, within BACOVA_02313at 79.070 kb on + strand, within BACOVA_02313at 79.070 kb on + strand, within BACOVA_02313at 79.202 kb on + strand, within BACOVA_02313at 79.233 kb on - strand, within BACOVA_02313at 79.242 kb on + strand, within BACOVA_02313at 79.243 kb on - strand, within BACOVA_02313at 79.448 kb on - strand, within BACOVA_02313at 79.448 kb on - strand, within BACOVA_02313at 79.457 kb on + strand, within BACOVA_02313at 79.458 kb on - strand, within BACOVA_02313at 79.568 kb on - strandat 79.702 kb on - strandat 79.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
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77,083 + BACOVA_02308 0.42 -0.2
77,145 + BACOVA_02308 0.51 -0.1
77,182 - BACOVA_02308 0.56 -1.4
77,182 - BACOVA_02308 0.56 -0.8
77,187 + BACOVA_02308 0.57 +0.6
77,209 - BACOVA_02308 0.60 -0.6
77,235 + BACOVA_02308 0.64 +0.1
77,236 - BACOVA_02308 0.64 +1.5
77,244 + BACOVA_02308 0.65 +0.8
77,245 - BACOVA_02308 0.65 -1.2
77,255 + BACOVA_02308 0.67 +0.2
77,256 - BACOVA_02308 0.67 -0.2
77,279 + BACOVA_02308 0.70 -0.4
77,280 - BACOVA_02308 0.70 -1.6
77,296 + BACOVA_02308 0.72 +0.4
77,332 - BACOVA_02308 0.77 -0.2
77,369 - BACOVA_02308 0.83 -0.1
77,382 + BACOVA_02308 0.84 -1.1
77,383 - BACOVA_02308 0.85 -3.1
77,384 + BACOVA_02308 0.85 +0.3
77,407 - BACOVA_02308 0.88 +0.0
77,413 + BACOVA_02308 0.89 -0.3
77,413 + BACOVA_02308 0.89 -0.0
77,459 - -0.5
77,497 + -1.9
77,498 - +0.3
77,507 - -0.0
77,507 - -1.5
77,520 - -1.2
77,586 + -0.0
77,607 - BACOVA_02309 0.17 -0.3
77,665 + BACOVA_02309 0.37 +1.8
77,666 - BACOVA_02309 0.38 +1.6
77,744 + BACOVA_02309 0.65 +1.0
77,744 + BACOVA_02309 0.65 -1.4
77,744 + BACOVA_02309 0.65 +0.2
77,744 + BACOVA_02309 0.65 -1.4
77,836 - +0.6
77,880 + BACOVA_02310 0.13 -1.7
77,882 + BACOVA_02310 0.14 -0.9
78,000 - BACOVA_02310 0.79 -0.3
78,009 + BACOVA_02310 0.84 -0.6
78,122 + +1.0
78,124 + +0.6
78,125 - -1.7
78,130 - -0.8
78,144 + BACOVA_02312 0.11 +1.3
78,145 - BACOVA_02312 0.11 -0.7
78,145 - BACOVA_02312 0.11 +0.3
78,145 - BACOVA_02312 0.11 +0.8
78,145 - BACOVA_02312 0.11 -1.3
78,145 - BACOVA_02312 0.11 -0.9
78,148 + BACOVA_02312 0.12 -0.2
78,148 + BACOVA_02312 0.12 +1.1
78,155 + BACOVA_02312 0.12 +0.3
78,155 + BACOVA_02312 0.12 +0.4
78,156 - BACOVA_02312 0.13 -0.2
78,156 - BACOVA_02312 0.13 +0.1
78,156 - BACOVA_02312 0.13 -1.4
78,189 + BACOVA_02312 0.17 -1.1
78,213 + BACOVA_02312 0.20 +0.3
78,213 + BACOVA_02312 0.20 -0.7
78,213 + BACOVA_02312 0.20 -0.3
78,214 - BACOVA_02312 0.20 +0.3
78,233 + BACOVA_02312 0.23 -1.3
78,234 - BACOVA_02312 0.23 -0.5
78,234 - BACOVA_02312 0.23 -0.0
78,234 - BACOVA_02312 0.23 +0.6
78,282 + BACOVA_02312 0.30 -0.1
78,282 + BACOVA_02312 0.30 +0.8
78,283 - BACOVA_02312 0.30 -1.0
78,287 - BACOVA_02312 0.30 -1.8
78,287 - BACOVA_02312 0.30 +0.6
78,292 + BACOVA_02312 0.31 -0.1
78,331 + BACOVA_02312 0.36 +1.0
78,335 + BACOVA_02312 0.37 -0.0
78,373 + BACOVA_02312 0.42 +0.6
78,384 - BACOVA_02312 0.43 -0.4
78,418 + BACOVA_02312 0.48 -0.4
78,428 + BACOVA_02312 0.49 +0.6
78,491 - BACOVA_02312 0.58 +0.3
78,502 + BACOVA_02312 0.59 +0.3
78,518 - BACOVA_02312 0.61 +0.3
78,521 + BACOVA_02312 0.62 +0.1
78,571 - BACOVA_02312 0.68 -0.7
78,591 + BACOVA_02312 0.71 -0.1
78,592 - BACOVA_02312 0.71 -0.0
78,626 + BACOVA_02312 0.76 +0.4
78,629 - BACOVA_02312 0.76 -0.8
78,643 + BACOVA_02312 0.78 +1.9
78,644 - BACOVA_02312 0.78 +1.3
78,653 - BACOVA_02312 0.79 -2.1
78,687 - BACOVA_02312 0.84 +0.3
78,702 - BACOVA_02312 0.86 -0.4
78,709 + BACOVA_02312 0.87 +1.3
78,722 + BACOVA_02312 0.89 -0.4
78,722 + BACOVA_02312 0.89 +0.1
78,786 - -2.2
78,786 - -2.5
78,838 + BACOVA_02311 0.69 -1.8
78,889 - -0.2
78,926 - -0.8
78,945 - +1.6
78,945 - +1.2
78,962 + -1.9
78,966 - -0.4
78,977 - -1.7
79,036 + BACOVA_02313 0.15 -0.0
79,037 - BACOVA_02313 0.15 +0.0
79,038 + BACOVA_02313 0.15 +0.1
79,039 - BACOVA_02313 0.15 +1.0
79,049 + BACOVA_02313 0.17 +0.1
79,057 + BACOVA_02313 0.18 -1.0
79,057 + BACOVA_02313 0.18 -0.2
79,057 + BACOVA_02313 0.18 +1.0
79,070 + BACOVA_02313 0.20 +0.3
79,070 + BACOVA_02313 0.20 -1.4
79,202 + BACOVA_02313 0.41 +0.6
79,233 - BACOVA_02313 0.46 +0.6
79,242 + BACOVA_02313 0.47 +0.8
79,243 - BACOVA_02313 0.47 -0.4
79,448 - BACOVA_02313 0.79 +0.0
79,448 - BACOVA_02313 0.79 -1.4
79,457 + BACOVA_02313 0.81 +0.2
79,458 - BACOVA_02313 0.81 +0.3
79,568 - -0.6
79,702 - +1.1
79,702 - -0.8

Or see this region's nucleotide sequence