Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02080

Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02078 and BACOVA_02079 are separated by 218 nucleotidesBACOVA_02079 and BACOVA_02080 overlap by 20 nucleotidesBACOVA_02080 and BACOVA_02081 are separated by 4 nucleotides BACOVA_02078: BACOVA_02078 - DNA-binding protein HU, at 404,923 to 405,195 _02078 BACOVA_02079: BACOVA_02079 - peptidase, S54 family, at 405,414 to 406,091 _02079 BACOVA_02080: BACOVA_02080 - peptidase, S54 family, at 406,072 to 406,977 _02080 BACOVA_02081: BACOVA_02081 - endonuclease/exonuclease/phosphatase family protein, at 406,982 to 408,067 _02081 Position (kb) 406 407Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 405.096 kb on + strand, within BACOVA_02078at 405.096 kb on + strand, within BACOVA_02078at 405.189 kb on + strandat 405.190 kb on - strandat 405.190 kb on - strandat 405.198 kb on + strandat 405.199 kb on - strandat 405.216 kb on - strandat 405.219 kb on - strandat 405.220 kb on + strandat 405.223 kb on - strandat 405.223 kb on - strandat 405.223 kb on - strandat 405.286 kb on + strandat 405.287 kb on - strandat 405.334 kb on + strandat 405.334 kb on + strandat 405.391 kb on + strandat 405.409 kb on + strandat 405.431 kb on + strandat 405.454 kb on + strandat 405.457 kb on + strandat 405.567 kb on + strand, within BACOVA_02079at 405.567 kb on + strand, within BACOVA_02079at 405.569 kb on + strand, within BACOVA_02079at 405.569 kb on + strand, within BACOVA_02079at 405.608 kb on + strand, within BACOVA_02079at 405.608 kb on + strand, within BACOVA_02079at 405.680 kb on + strand, within BACOVA_02079at 405.707 kb on + strand, within BACOVA_02079at 405.726 kb on + strand, within BACOVA_02079at 405.728 kb on + strand, within BACOVA_02079at 405.776 kb on + strand, within BACOVA_02079at 405.801 kb on + strand, within BACOVA_02079at 405.866 kb on + strand, within BACOVA_02079at 405.866 kb on + strand, within BACOVA_02079at 405.942 kb on + strand, within BACOVA_02079at 405.958 kb on + strand, within BACOVA_02079at 405.958 kb on + strand, within BACOVA_02079at 406.047 kb on + strandat 406.080 kb on + strandat 406.080 kb on + strandat 406.140 kb on + strandat 406.203 kb on - strand, within BACOVA_02080at 406.218 kb on - strand, within BACOVA_02080at 406.218 kb on - strand, within BACOVA_02080at 406.226 kb on + strand, within BACOVA_02080at 406.257 kb on + strand, within BACOVA_02080at 406.258 kb on - strand, within BACOVA_02080at 406.278 kb on - strand, within BACOVA_02080at 406.339 kb on + strand, within BACOVA_02080at 406.340 kb on - strand, within BACOVA_02080at 406.394 kb on + strand, within BACOVA_02080at 406.395 kb on - strand, within BACOVA_02080at 406.396 kb on + strand, within BACOVA_02080at 406.396 kb on + strand, within BACOVA_02080at 406.397 kb on - strand, within BACOVA_02080at 406.397 kb on - strand, within BACOVA_02080at 406.400 kb on + strand, within BACOVA_02080at 406.400 kb on + strand, within BACOVA_02080at 406.400 kb on + strand, within BACOVA_02080at 406.429 kb on + strand, within BACOVA_02080at 406.626 kb on - strand, within BACOVA_02080at 406.657 kb on - strand, within BACOVA_02080at 406.706 kb on + strand, within BACOVA_02080at 406.710 kb on + strand, within BACOVA_02080at 406.809 kb on - strand, within BACOVA_02080at 406.990 kb on + strandat 407.010 kb on - strandat 407.016 kb on + strandat 407.017 kb on - strandat 407.017 kb on - strandat 407.052 kb on + strandat 407.055 kb on + strandat 407.055 kb on + strandat 407.056 kb on - strandat 407.066 kb on - strandat 407.173 kb on - strand, within BACOVA_02081at 407.183 kb on + strand, within BACOVA_02081at 407.184 kb on - strand, within BACOVA_02081at 407.212 kb on - strand, within BACOVA_02081at 407.229 kb on + strand, within BACOVA_02081at 407.237 kb on + strand, within BACOVA_02081at 407.238 kb on - strand, within BACOVA_02081at 407.239 kb on + strand, within BACOVA_02081at 407.304 kb on + strand, within BACOVA_02081at 407.305 kb on - strand, within BACOVA_02081at 407.357 kb on + strand, within BACOVA_02081at 407.358 kb on - strand, within BACOVA_02081at 407.364 kb on + strand, within BACOVA_02081at 407.364 kb on + strand, within BACOVA_02081at 407.365 kb on - strand, within BACOVA_02081at 407.368 kb on + strand, within BACOVA_02081at 407.368 kb on + strand, within BACOVA_02081at 407.369 kb on - strand, within BACOVA_02081at 407.371 kb on + strand, within BACOVA_02081at 407.383 kb on + strand, within BACOVA_02081at 407.383 kb on + strand, within BACOVA_02081at 407.384 kb on - strand, within BACOVA_02081at 407.399 kb on + strand, within BACOVA_02081at 407.400 kb on - strand, within BACOVA_02081at 407.400 kb on - strand, within BACOVA_02081at 407.400 kb on - strand, within BACOVA_02081at 407.401 kb on + strand, within BACOVA_02081at 407.401 kb on + strand, within BACOVA_02081at 407.401 kb on + strand, within BACOVA_02081at 407.402 kb on - strand, within BACOVA_02081at 407.402 kb on - strand, within BACOVA_02081at 407.402 kb on - strand, within BACOVA_02081at 407.402 kb on - strand, within BACOVA_02081at 407.443 kb on + strand, within BACOVA_02081at 407.462 kb on + strand, within BACOVA_02081at 407.541 kb on + strand, within BACOVA_02081at 407.542 kb on - strand, within BACOVA_02081at 407.555 kb on + strand, within BACOVA_02081at 407.563 kb on + strand, within BACOVA_02081at 407.564 kb on - strand, within BACOVA_02081at 407.569 kb on + strand, within BACOVA_02081at 407.614 kb on + strand, within BACOVA_02081at 407.614 kb on + strand, within BACOVA_02081at 407.614 kb on + strand, within BACOVA_02081at 407.614 kb on + strand, within BACOVA_02081at 407.615 kb on - strand, within BACOVA_02081at 407.615 kb on - strand, within BACOVA_02081at 407.680 kb on + strand, within BACOVA_02081at 407.722 kb on + strand, within BACOVA_02081at 407.734 kb on - strand, within BACOVA_02081at 407.810 kb on + strand, within BACOVA_02081at 407.827 kb on - strand, within BACOVA_02081at 407.827 kb on - strand, within BACOVA_02081at 407.827 kb on - strand, within BACOVA_02081at 407.851 kb on + strand, within BACOVA_02081at 407.858 kb on + strand, within BACOVA_02081at 407.858 kb on + strand, within BACOVA_02081at 407.860 kb on + strand, within BACOVA_02081at 407.861 kb on - strand, within BACOVA_02081at 407.924 kb on - strand, within BACOVA_02081at 407.931 kb on - strand, within BACOVA_02081at 407.949 kb on - strand, within BACOVA_02081at 407.959 kb on - strandat 407.965 kb on + strandat 407.966 kb on - strandat 407.966 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
remove
405,096 + BACOVA_02078 0.63 +0.0
405,096 + BACOVA_02078 0.63 -1.0
405,189 + -0.2
405,190 - -0.2
405,190 - -1.6
405,198 + -3.3
405,199 - -1.7
405,216 - -1.9
405,219 - -1.0
405,220 + -0.9
405,223 - +0.2
405,223 - +0.4
405,223 - -1.1
405,286 + -3.2
405,287 - +1.2
405,334 + -0.9
405,334 + +0.4
405,391 + -1.3
405,409 + -0.3
405,431 + -0.3
405,454 + +2.6
405,457 + +0.8
405,567 + BACOVA_02079 0.23 +2.1
405,567 + BACOVA_02079 0.23 -0.7
405,569 + BACOVA_02079 0.23 +2.0
405,569 + BACOVA_02079 0.23 -0.1
405,608 + BACOVA_02079 0.29 +1.0
405,608 + BACOVA_02079 0.29 +1.0
405,680 + BACOVA_02079 0.39 -0.0
405,707 + BACOVA_02079 0.43 -1.2
405,726 + BACOVA_02079 0.46 +1.0
405,728 + BACOVA_02079 0.46 -0.6
405,776 + BACOVA_02079 0.53 +1.5
405,801 + BACOVA_02079 0.57 +0.8
405,866 + BACOVA_02079 0.67 -2.3
405,866 + BACOVA_02079 0.67 -0.3
405,942 + BACOVA_02079 0.78 +0.9
405,958 + BACOVA_02079 0.80 -1.0
405,958 + BACOVA_02079 0.80 -0.2
406,047 + -0.6
406,080 + +0.8
406,080 + +0.8
406,140 + +0.0
406,203 - BACOVA_02080 0.14 -0.1
406,218 - BACOVA_02080 0.16 -0.7
406,218 - BACOVA_02080 0.16 +1.8
406,226 + BACOVA_02080 0.17 +0.5
406,257 + BACOVA_02080 0.20 +1.4
406,258 - BACOVA_02080 0.21 +0.2
406,278 - BACOVA_02080 0.23 +2.9
406,339 + BACOVA_02080 0.29 +1.8
406,340 - BACOVA_02080 0.30 -0.7
406,394 + BACOVA_02080 0.36 +0.5
406,395 - BACOVA_02080 0.36 -0.3
406,396 + BACOVA_02080 0.36 +0.9
406,396 + BACOVA_02080 0.36 +1.8
406,397 - BACOVA_02080 0.36 -1.1
406,397 - BACOVA_02080 0.36 +0.5
406,400 + BACOVA_02080 0.36 +0.4
406,400 + BACOVA_02080 0.36 +1.1
406,400 + BACOVA_02080 0.36 +0.4
406,429 + BACOVA_02080 0.39 +0.4
406,626 - BACOVA_02080 0.61 +0.4
406,657 - BACOVA_02080 0.65 -0.3
406,706 + BACOVA_02080 0.70 -0.2
406,710 + BACOVA_02080 0.70 -1.6
406,809 - BACOVA_02080 0.81 +0.4
406,990 + -0.2
407,010 - +1.1
407,016 + -0.1
407,017 - -1.6
407,017 - +0.5
407,052 + -0.5
407,055 + +0.4
407,055 + -0.4
407,056 - -0.9
407,066 - +0.0
407,173 - BACOVA_02081 0.18 +2.2
407,183 + BACOVA_02081 0.19 -0.2
407,184 - BACOVA_02081 0.19 +0.8
407,212 - BACOVA_02081 0.21 -0.1
407,229 + BACOVA_02081 0.23 -0.9
407,237 + BACOVA_02081 0.23 -1.2
407,238 - BACOVA_02081 0.24 +0.0
407,239 + BACOVA_02081 0.24 +1.0
407,304 + BACOVA_02081 0.30 -0.8
407,305 - BACOVA_02081 0.30 -0.5
407,357 + BACOVA_02081 0.35 +0.3
407,358 - BACOVA_02081 0.35 +1.4
407,364 + BACOVA_02081 0.35 +1.1
407,364 + BACOVA_02081 0.35 -0.4
407,365 - BACOVA_02081 0.35 +0.3
407,368 + BACOVA_02081 0.36 -0.8
407,368 + BACOVA_02081 0.36 -0.3
407,369 - BACOVA_02081 0.36 -0.1
407,371 + BACOVA_02081 0.36 -1.6
407,383 + BACOVA_02081 0.37 -1.1
407,383 + BACOVA_02081 0.37 -1.3
407,384 - BACOVA_02081 0.37 -1.4
407,399 + BACOVA_02081 0.38 +1.4
407,400 - BACOVA_02081 0.38 -0.8
407,400 - BACOVA_02081 0.38 -0.5
407,400 - BACOVA_02081 0.38 -1.1
407,401 + BACOVA_02081 0.39 -0.3
407,401 + BACOVA_02081 0.39 +0.3
407,401 + BACOVA_02081 0.39 -1.1
407,402 - BACOVA_02081 0.39 -0.6
407,402 - BACOVA_02081 0.39 -0.3
407,402 - BACOVA_02081 0.39 -0.3
407,402 - BACOVA_02081 0.39 +1.8
407,443 + BACOVA_02081 0.42 -3.0
407,462 + BACOVA_02081 0.44 +0.4
407,541 + BACOVA_02081 0.51 +0.2
407,542 - BACOVA_02081 0.52 +1.1
407,555 + BACOVA_02081 0.53 -1.1
407,563 + BACOVA_02081 0.53 -0.3
407,564 - BACOVA_02081 0.54 -0.1
407,569 + BACOVA_02081 0.54 -0.8
407,614 + BACOVA_02081 0.58 -0.7
407,614 + BACOVA_02081 0.58 -1.0
407,614 + BACOVA_02081 0.58 -0.2
407,614 + BACOVA_02081 0.58 +0.4
407,615 - BACOVA_02081 0.58 -0.1
407,615 - BACOVA_02081 0.58 -1.0
407,680 + BACOVA_02081 0.64 +0.3
407,722 + BACOVA_02081 0.68 +0.0
407,734 - BACOVA_02081 0.69 -1.2
407,810 + BACOVA_02081 0.76 +0.5
407,827 - BACOVA_02081 0.78 +0.2
407,827 - BACOVA_02081 0.78 -0.3
407,827 - BACOVA_02081 0.78 +1.1
407,851 + BACOVA_02081 0.80 +0.1
407,858 + BACOVA_02081 0.81 -0.3
407,858 + BACOVA_02081 0.81 +0.5
407,860 + BACOVA_02081 0.81 -2.0
407,861 - BACOVA_02081 0.81 +0.4
407,924 - BACOVA_02081 0.87 -0.6
407,931 - BACOVA_02081 0.87 -2.6
407,949 - BACOVA_02081 0.89 +1.8
407,959 - -0.3
407,965 + -0.4
407,966 - -0.2
407,966 - -0.6

Or see this region's nucleotide sequence