Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00860 and BACOVA_00861 are separated by 150 nucleotides BACOVA_00861 and BACOVA_00862 are separated by 126 nucleotides BACOVA_00862 and BACOVA_00863 are separated by 44 nucleotides BACOVA_00863 and BACOVA_00864 are separated by 207 nucleotides
BACOVA_00860: BACOVA_00860 - transcriptional regulator, LacI family, at 114,851 to 115,924
_00860
BACOVA_00861: BACOVA_00861 - hypothetical protein, at 116,075 to 116,188
_00861
BACOVA_00862: BACOVA_00862 - hypothetical protein, at 116,315 to 116,602
_00862
BACOVA_00863: BACOVA_00863 - transglycosylase associated protein, at 116,647 to 116,892
_00863
BACOVA_00864: BACOVA_00864 - transporter, major facilitator family protein, at 117,100 to 118,305
_00864
Position (kb)
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 115.101 kb on + strand, within BACOVA_00860 at 115.136 kb on - strand, within BACOVA_00860 at 115.148 kb on + strand, within BACOVA_00860 at 115.148 kb on + strand, within BACOVA_00860 at 115.148 kb on + strand, within BACOVA_00860 at 115.193 kb on - strand, within BACOVA_00860 at 115.195 kb on - strand, within BACOVA_00860 at 115.297 kb on + strand, within BACOVA_00860 at 115.337 kb on + strand, within BACOVA_00860 at 115.338 kb on - strand, within BACOVA_00860 at 115.399 kb on - strand, within BACOVA_00860 at 115.416 kb on + strand, within BACOVA_00860 at 115.455 kb on + strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.456 kb on - strand, within BACOVA_00860 at 115.461 kb on + strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.462 kb on - strand, within BACOVA_00860 at 115.466 kb on + strand, within BACOVA_00860 at 115.467 kb on - strand, within BACOVA_00860 at 115.467 kb on - strand, within BACOVA_00860 at 115.532 kb on + strand, within BACOVA_00860 at 115.570 kb on + strand, within BACOVA_00860 at 115.591 kb on + strand, within BACOVA_00860 at 115.591 kb on + strand, within BACOVA_00860 at 115.592 kb on - strand, within BACOVA_00860 at 115.594 kb on - strand, within BACOVA_00860 at 115.594 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.659 kb on - strand, within BACOVA_00860 at 115.661 kb on - strand, within BACOVA_00860 at 115.684 kb on - strand, within BACOVA_00860 at 115.708 kb on + strand, within BACOVA_00860 at 115.725 kb on + strand, within BACOVA_00860 at 115.726 kb on - strand, within BACOVA_00860 at 115.726 kb on - strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.778 kb on + strand, within BACOVA_00860 at 115.779 kb on - strand, within BACOVA_00860 at 115.779 kb on - strand, within BACOVA_00860 at 115.823 kb on + strand at 115.854 kb on - strand at 115.883 kb on - strand at 115.892 kb on + strand at 115.933 kb on - strand at 115.936 kb on + strand at 116.098 kb on + strand, within BACOVA_00861 at 116.099 kb on - strand, within BACOVA_00861 at 116.101 kb on + strand, within BACOVA_00861 at 116.120 kb on - strand, within BACOVA_00861 at 116.194 kb on + strand at 116.316 kb on + strand at 116.330 kb on - strand at 116.374 kb on + strand, within BACOVA_00862 at 116.407 kb on + strand, within BACOVA_00862 at 116.451 kb on - strand, within BACOVA_00862 at 116.479 kb on + strand, within BACOVA_00862 at 116.479 kb on + strand, within BACOVA_00862 at 116.485 kb on + strand, within BACOVA_00862 at 116.486 kb on - strand, within BACOVA_00862 at 116.486 kb on - strand, within BACOVA_00862 at 116.488 kb on - strand, within BACOVA_00862 at 116.535 kb on + strand, within BACOVA_00862 at 116.594 kb on - strand at 116.619 kb on + strand at 116.620 kb on - strand at 116.640 kb on + strand at 116.644 kb on + strand at 116.644 kb on + strand at 116.683 kb on + strand, within BACOVA_00863 at 116.684 kb on - strand, within BACOVA_00863 at 116.684 kb on - strand, within BACOVA_00863 at 116.710 kb on + strand, within BACOVA_00863 at 116.806 kb on - strand, within BACOVA_00863 at 116.862 kb on + strand, within BACOVA_00863 at 116.875 kb on - strand at 116.875 kb on - strand at 116.876 kb on + strand at 116.877 kb on - strand at 116.882 kb on - strand at 116.883 kb on + strand at 116.883 kb on + strand at 116.893 kb on - strand at 116.895 kb on - strand at 116.925 kb on + strand at 116.925 kb on + strand at 116.926 kb on - strand at 116.992 kb on + strand at 116.998 kb on + strand at 117.003 kb on + strand at 117.004 kb on - strand at 117.025 kb on - strand at 117.027 kb on - strand at 117.052 kb on - strand at 117.096 kb on + strand at 117.099 kb on + strand at 117.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C) remove 115,101 + BACOVA_00860 0.23 -1.5 115,136 - BACOVA_00860 0.27 -0.9 115,148 + BACOVA_00860 0.28 -1.7 115,148 + BACOVA_00860 0.28 +0.1 115,148 + BACOVA_00860 0.28 +0.5 115,193 - BACOVA_00860 0.32 -0.1 115,195 - BACOVA_00860 0.32 -1.5 115,297 + BACOVA_00860 0.42 +0.3 115,337 + BACOVA_00860 0.45 -1.4 115,338 - BACOVA_00860 0.45 +1.0 115,399 - BACOVA_00860 0.51 +0.3 115,416 + BACOVA_00860 0.53 -2.3 115,455 + BACOVA_00860 0.56 +0.4 115,456 - BACOVA_00860 0.56 -0.8 115,456 - BACOVA_00860 0.56 -0.5 115,456 - BACOVA_00860 0.56 -0.2 115,461 + BACOVA_00860 0.57 -0.3 115,462 - BACOVA_00860 0.57 +0.4 115,462 - BACOVA_00860 0.57 -0.0 115,462 - BACOVA_00860 0.57 -1.2 115,462 - BACOVA_00860 0.57 +1.1 115,466 + BACOVA_00860 0.57 -0.8 115,467 - BACOVA_00860 0.57 -0.6 115,467 - BACOVA_00860 0.57 -1.1 115,532 + BACOVA_00860 0.63 +1.3 115,570 + BACOVA_00860 0.67 +1.8 115,591 + BACOVA_00860 0.69 +0.6 115,591 + BACOVA_00860 0.69 +0.8 115,592 - BACOVA_00860 0.69 -0.2 115,594 - BACOVA_00860 0.69 -0.8 115,594 - BACOVA_00860 0.69 +0.2 115,659 - BACOVA_00860 0.75 -2.5 115,659 - BACOVA_00860 0.75 +0.6 115,659 - BACOVA_00860 0.75 -1.5 115,661 - BACOVA_00860 0.75 +0.7 115,684 - BACOVA_00860 0.78 -0.4 115,708 + BACOVA_00860 0.80 -0.6 115,725 + BACOVA_00860 0.81 -0.1 115,726 - BACOVA_00860 0.81 -2.1 115,726 - BACOVA_00860 0.81 +0.1 115,778 + BACOVA_00860 0.86 -0.7 115,778 + BACOVA_00860 0.86 -2.4 115,778 + BACOVA_00860 0.86 -0.9 115,779 - BACOVA_00860 0.86 -0.5 115,779 - BACOVA_00860 0.86 +0.5 115,823 + -1.6 115,854 - +0.2 115,883 - +0.3 115,892 + -0.5 115,933 - -0.0 115,936 + +1.2 116,098 + BACOVA_00861 0.20 -0.4 116,099 - BACOVA_00861 0.21 -0.9 116,101 + BACOVA_00861 0.23 -1.3 116,120 - BACOVA_00861 0.39 -0.1 116,194 + +1.2 116,316 + +0.5 116,330 - -1.4 116,374 + BACOVA_00862 0.20 +1.1 116,407 + BACOVA_00862 0.32 +1.9 116,451 - BACOVA_00862 0.47 +0.1 116,479 + BACOVA_00862 0.57 -1.2 116,479 + BACOVA_00862 0.57 -0.3 116,485 + BACOVA_00862 0.59 +0.6 116,486 - BACOVA_00862 0.59 -0.3 116,486 - BACOVA_00862 0.59 -0.6 116,488 - BACOVA_00862 0.60 -1.8 116,535 + BACOVA_00862 0.76 -2.1 116,594 - -0.4 116,619 + -3.0 116,620 - -1.1 116,640 + +0.1 116,644 + -0.7 116,644 + +0.1 116,683 + BACOVA_00863 0.15 -0.5 116,684 - BACOVA_00863 0.15 +0.4 116,684 - BACOVA_00863 0.15 -1.9 116,710 + BACOVA_00863 0.26 -1.7 116,806 - BACOVA_00863 0.65 +0.2 116,862 + BACOVA_00863 0.87 +1.4 116,875 - +0.4 116,875 - -0.4 116,876 + -0.4 116,877 - -2.5 116,882 - -1.1 116,883 + +2.9 116,883 + -0.1 116,893 - -0.0 116,895 - -0.7 116,925 + -1.3 116,925 + +0.4 116,926 - +0.9 116,992 + -1.1 116,998 + +1.0 117,003 + +0.2 117,004 - -1.5 117,025 - -0.1 117,027 - -0.1 117,052 - +0.6 117,096 + +1.4 117,099 + -1.8 117,100 - +0.1
Or see this region's nucleotide sequence