Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00830 and BACOVA_00831 are separated by 39 nucleotides BACOVA_00831 and BACOVA_00832 are separated by 162 nucleotides BACOVA_00832 and BACOVA_00833 overlap by 4 nucleotides
BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549
_00830
BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188
_00831
BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842
_00832
BACOVA_00833: BACOVA_00833 - TonB-dependent receptor, at 83,839 to 85,998
_00833
Position (kb) 83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 82.351 kb on - strand, within BACOVA_00830 at 82.373 kb on - strand, within BACOVA_00830 at 82.488 kb on - strand at 82.488 kb on - strand at 82.552 kb on + strand at 82.552 kb on + strand at 82.552 kb on + strand at 82.553 kb on - strand at 82.553 kb on - strand at 82.571 kb on + strand at 82.572 kb on - strand at 82.574 kb on + strand at 82.575 kb on - strand at 82.594 kb on + strand at 82.739 kb on + strand, within BACOVA_00831 at 82.753 kb on + strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.754 kb on - strand, within BACOVA_00831 at 82.755 kb on + strand, within BACOVA_00831 at 82.787 kb on - strand, within BACOVA_00831 at 82.798 kb on + strand, within BACOVA_00831 at 82.822 kb on + strand, within BACOVA_00831 at 82.823 kb on - strand, within BACOVA_00831 at 82.877 kb on - strand, within BACOVA_00831 at 82.900 kb on + strand, within BACOVA_00831 at 82.915 kb on + strand, within BACOVA_00831 at 82.990 kb on + strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.011 kb on - strand, within BACOVA_00831 at 83.062 kb on - strand, within BACOVA_00831 at 83.065 kb on + strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.080 kb on + strand, within BACOVA_00831 at 83.081 kb on - strand, within BACOVA_00831 at 83.082 kb on + strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.086 kb on + strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.146 kb on + strand at 83.148 kb on + strand at 83.189 kb on - strand at 83.213 kb on + strand at 83.241 kb on + strand at 83.241 kb on + strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.246 kb on - strand at 83.276 kb on + strand at 83.281 kb on - strand at 83.344 kb on + strand at 83.352 kb on + strand at 83.389 kb on + strand at 83.416 kb on - strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.509 kb on + strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.585 kb on - strand, within BACOVA_00832 at 83.588 kb on - strand, within BACOVA_00832 at 83.617 kb on + strand, within BACOVA_00832 at 83.618 kb on - strand, within BACOVA_00832 at 83.618 kb on - strand, within BACOVA_00832 at 83.794 kb on + strand at 83.795 kb on - strand at 83.795 kb on - strand at 83.873 kb on - strand at 83.886 kb on + strand at 83.886 kb on + strand at 83.887 kb on - strand at 83.937 kb on - strand at 83.954 kb on - strand at 83.954 kb on - strand at 84.006 kb on + strand at 84.073 kb on - strand, within BACOVA_00833 at 84.111 kb on + strand, within BACOVA_00833 at 84.111 kb on + strand, within BACOVA_00833 at 84.112 kb on - strand, within BACOVA_00833 at 84.112 kb on - strand, within BACOVA_00833 at 84.133 kb on + strand, within BACOVA_00833 at 84.134 kb on - strand, within BACOVA_00833 at 84.138 kb on + strand, within BACOVA_00833 at 84.138 kb on + strand, within BACOVA_00833 at 84.139 kb on - strand, within BACOVA_00833 at 84.194 kb on + strand, within BACOVA_00833 at 84.200 kb on + strand, within BACOVA_00833 at 84.201 kb on - strand, within BACOVA_00833 at 84.207 kb on - strand, within BACOVA_00833 at 84.253 kb on + strand, within BACOVA_00833 at 84.253 kb on + strand, within BACOVA_00833 at 84.254 kb on - strand, within BACOVA_00833 at 84.259 kb on - strand, within BACOVA_00833 at 84.277 kb on + strand, within BACOVA_00833 at 84.277 kb on + strand, within BACOVA_00833 at 84.296 kb on + strand, within BACOVA_00833 at 84.302 kb on + strand, within BACOVA_00833 at 84.422 kb on + strand, within BACOVA_00833 at 84.423 kb on - strand, within BACOVA_00833 at 84.499 kb on + strand, within BACOVA_00833 at 84.500 kb on - strand, within BACOVA_00833 at 84.563 kb on - strand, within BACOVA_00833 at 84.620 kb on + strand, within BACOVA_00833 at 84.707 kb on + strand, within BACOVA_00833 at 84.708 kb on - strand, within BACOVA_00833 at 84.708 kb on - strand, within BACOVA_00833 at 84.712 kb on - strand, within BACOVA_00833 at 84.730 kb on - strand, within BACOVA_00833 at 84.735 kb on + strand, within BACOVA_00833 at 84.750 kb on - strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833
Per-strain Table
Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C) remove 82,351 - BACOVA_00830 0.87 -0.8 82,373 - BACOVA_00830 0.88 +0.3 82,488 - +0.4 82,488 - -2.1 82,552 + -0.9 82,552 + -0.5 82,552 + -2.0 82,553 - -0.9 82,553 - -0.4 82,571 + -0.5 82,572 - -0.5 82,574 + -1.9 82,575 - +0.2 82,594 + +0.2 82,739 + BACOVA_00831 0.25 +0.4 82,753 + BACOVA_00831 0.27 -0.0 82,754 - BACOVA_00831 0.28 +0.2 82,754 - BACOVA_00831 0.28 -0.7 82,754 - BACOVA_00831 0.28 +0.9 82,755 + BACOVA_00831 0.28 -0.6 82,787 - BACOVA_00831 0.33 +0.2 82,798 + BACOVA_00831 0.35 -0.5 82,822 + BACOVA_00831 0.39 -1.2 82,823 - BACOVA_00831 0.39 +0.1 82,877 - BACOVA_00831 0.48 +2.1 82,900 + BACOVA_00831 0.52 -0.8 82,915 + BACOVA_00831 0.54 -1.5 82,990 + BACOVA_00831 0.67 -0.2 83,008 - BACOVA_00831 0.70 +1.2 83,008 - BACOVA_00831 0.70 -1.1 83,008 - BACOVA_00831 0.70 -1.1 83,011 - BACOVA_00831 0.70 -0.1 83,062 - BACOVA_00831 0.79 +0.4 83,065 + BACOVA_00831 0.79 +0.4 83,066 - BACOVA_00831 0.80 +0.9 83,066 - BACOVA_00831 0.80 -0.6 83,066 - BACOVA_00831 0.80 -0.6 83,066 - BACOVA_00831 0.80 -1.1 83,080 + BACOVA_00831 0.82 -1.4 83,081 - BACOVA_00831 0.82 +0.9 83,082 + BACOVA_00831 0.82 +0.4 83,083 - BACOVA_00831 0.82 +1.8 83,083 - BACOVA_00831 0.82 +2.8 83,083 - BACOVA_00831 0.82 +0.6 83,083 - BACOVA_00831 0.82 +0.4 83,086 + BACOVA_00831 0.83 -0.9 83,087 - BACOVA_00831 0.83 +0.1 83,087 - BACOVA_00831 0.83 +2.8 83,087 - BACOVA_00831 0.83 -2.8 83,087 - BACOVA_00831 0.83 -0.2 83,146 + +0.8 83,148 + -1.0 83,189 - -1.2 83,213 + +0.4 83,241 + -1.4 83,241 + -1.9 83,242 - +1.9 83,242 - -0.8 83,242 - -0.5 83,246 - -2.2 83,276 + -0.9 83,281 - -0.2 83,344 + -0.9 83,352 + -1.3 83,389 + +1.4 83,416 - BACOVA_00832 0.13 -2.4 83,489 + BACOVA_00832 0.28 +0.4 83,489 + BACOVA_00832 0.28 +0.4 83,490 - BACOVA_00832 0.28 -0.6 83,490 - BACOVA_00832 0.28 +0.0 83,509 + BACOVA_00832 0.32 -1.7 83,510 - BACOVA_00832 0.32 +0.8 83,510 - BACOVA_00832 0.32 -1.4 83,510 - BACOVA_00832 0.32 +0.5 83,538 + BACOVA_00832 0.38 +0.1 83,538 + BACOVA_00832 0.38 +0.5 83,539 - BACOVA_00832 0.38 -0.6 83,539 - BACOVA_00832 0.38 +0.1 83,585 - BACOVA_00832 0.48 -0.9 83,588 - BACOVA_00832 0.48 -1.0 83,617 + BACOVA_00832 0.54 -2.9 83,618 - BACOVA_00832 0.54 -0.0 83,618 - BACOVA_00832 0.54 -0.4 83,794 + +0.8 83,795 - +0.4 83,795 - -0.6 83,873 - +1.9 83,886 + +0.5 83,886 + -0.5 83,887 - +1.5 83,937 - +1.6 83,954 - +0.0 83,954 - +0.0 84,006 + +0.4 84,073 - BACOVA_00833 0.11 -0.1 84,111 + BACOVA_00833 0.13 +2.2 84,111 + BACOVA_00833 0.13 +0.1 84,112 - BACOVA_00833 0.13 -0.2 84,112 - BACOVA_00833 0.13 -0.1 84,133 + BACOVA_00833 0.14 -0.7 84,134 - BACOVA_00833 0.14 +0.9 84,138 + BACOVA_00833 0.14 +0.9 84,138 + BACOVA_00833 0.14 -0.1 84,139 - BACOVA_00833 0.14 +0.5 84,194 + BACOVA_00833 0.16 -0.4 84,200 + BACOVA_00833 0.17 +1.5 84,201 - BACOVA_00833 0.17 -0.4 84,207 - BACOVA_00833 0.17 -0.6 84,253 + BACOVA_00833 0.19 -0.7 84,253 + BACOVA_00833 0.19 -1.8 84,254 - BACOVA_00833 0.19 -2.3 84,259 - BACOVA_00833 0.19 +0.9 84,277 + BACOVA_00833 0.20 +0.1 84,277 + BACOVA_00833 0.20 +0.1 84,296 + BACOVA_00833 0.21 -0.2 84,302 + BACOVA_00833 0.21 -0.8 84,422 + BACOVA_00833 0.27 +0.2 84,423 - BACOVA_00833 0.27 -0.5 84,499 + BACOVA_00833 0.31 +0.3 84,500 - BACOVA_00833 0.31 -1.4 84,563 - BACOVA_00833 0.34 -1.8 84,620 + BACOVA_00833 0.36 -0.7 84,707 + BACOVA_00833 0.40 +0.6 84,708 - BACOVA_00833 0.40 -0.4 84,708 - BACOVA_00833 0.40 -1.0 84,712 - BACOVA_00833 0.40 +0.1 84,730 - BACOVA_00833 0.41 -0.7 84,735 + BACOVA_00833 0.41 +1.2 84,750 - BACOVA_00833 0.42 -0.3 84,791 + BACOVA_00833 0.44 -1.2 84,791 + BACOVA_00833 0.44 +0.2 84,791 + BACOVA_00833 0.44 +1.1
Or see this region's nucleotide sequence