Experiment: Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00579 and BACOVA_00580 are separated by 152 nucleotides BACOVA_00580 and BACOVA_00581 are separated by 137 nucleotides BACOVA_00581 and BACOVA_00582 are separated by 126 nucleotides
BACOVA_00579: BACOVA_00579 - VirE N-terminal domain protein, at 12,217 to 14,544
_00579
BACOVA_00580: BACOVA_00580 - hypothetical protein, at 14,697 to 15,056
_00580
BACOVA_00581: BACOVA_00581 - hypothetical protein, at 15,194 to 15,700
_00581
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.287 kb on - strand, within BACOVA_00579 at 14.287 kb on - strand, within BACOVA_00579 at 14.416 kb on - strand at 14.422 kb on + strand at 14.435 kb on + strand at 14.436 kb on - strand at 14.436 kb on - strand at 14.436 kb on - strand at 14.455 kb on - strand at 14.455 kb on - strand at 14.458 kb on - strand at 14.533 kb on + strand at 14.546 kb on + strand at 14.546 kb on + strand at 14.547 kb on - strand at 14.571 kb on + strand at 14.587 kb on - strand at 14.630 kb on + strand at 14.638 kb on + strand at 14.670 kb on - strand at 14.688 kb on + strand at 14.821 kb on + strand, within BACOVA_00580 at 14.893 kb on - strand, within BACOVA_00580 at 14.919 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.945 kb on - strand, within BACOVA_00580 at 14.975 kb on + strand, within BACOVA_00580 at 15.026 kb on - strand at 15.032 kb on - strand at 15.242 kb on + strand at 15.269 kb on - strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.270 kb on + strand, within BACOVA_00581 at 15.271 kb on - strand, within BACOVA_00581 at 15.300 kb on + strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.301 kb on - strand, within BACOVA_00581 at 15.304 kb on + strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.473 kb on - strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.497 kb on + strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.498 kb on - strand, within BACOVA_00581 at 15.517 kb on + strand, within BACOVA_00581 at 15.522 kb on + strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.523 kb on - strand, within BACOVA_00581 at 15.530 kb on - strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.588 kb on + strand, within BACOVA_00581 at 15.699 kb on - strand at 15.763 kb on - strand at 15.766 kb on - strand at 15.778 kb on - strand at 15.806 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.826 kb on + strand at 15.827 kb on - strand at 15.830 kb on + strand at 15.830 kb on + strand at 15.831 kb on - strand at 15.832 kb on + strand at 15.833 kb on - strand at 15.833 kb on - strand at 15.837 kb on + strand at 15.846 kb on + strand at 15.847 kb on - strand at 15.952 kb on - strand at 15.952 kb on - strand at 15.954 kb on + strand at 15.956 kb on + strand at 16.012 kb on + strand at 16.017 kb on + strand at 16.018 kb on - strand at 16.022 kb on - strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.040 kb on + strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.041 kb on - strand at 16.054 kb on + strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.055 kb on - strand, within BACOVA_00582 at 16.096 kb on + strand, within BACOVA_00582 at 16.097 kb on - strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.114 kb on + strand, within BACOVA_00582 at 16.177 kb on + strand, within BACOVA_00582 at 16.191 kb on + strand, within BACOVA_00582 at 16.192 kb on - strand, within BACOVA_00582 at 16.325 kb on - strand, within BACOVA_00582 at 16.426 kb on + strand, within BACOVA_00582 at 16.542 kb on + strand, within BACOVA_00582 at 16.543 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.604 kb on - strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.626 kb on + strand, within BACOVA_00582 at 16.628 kb on + strand, within BACOVA_00582 at 16.691 kb on + strand, within BACOVA_00582
Per-strain Table
Position Strand Gene LocusTag Fraction Pustulan (b-1-6 glucan) 2.5 mg/mL (C) remove 14,287 - BACOVA_00579 0.89 +1.2 14,287 - BACOVA_00579 0.89 -0.2 14,416 - +2.9 14,422 + +0.4 14,435 + +0.8 14,436 - -0.8 14,436 - -1.1 14,436 - -0.7 14,455 - -0.1 14,455 - -1.0 14,458 - +0.0 14,533 + -0.4 14,546 + -0.1 14,546 + +0.9 14,547 - -0.2 14,571 + -0.4 14,587 - -0.1 14,630 + +1.5 14,638 + -1.4 14,670 - -0.3 14,688 + +1.0 14,821 + BACOVA_00580 0.34 +0.0 14,893 - BACOVA_00580 0.54 +0.7 14,919 - BACOVA_00580 0.62 +1.3 14,945 - BACOVA_00580 0.69 +1.1 14,945 - BACOVA_00580 0.69 +0.2 14,975 + BACOVA_00580 0.77 -0.4 15,026 - +0.9 15,032 - +2.2 15,242 + -0.4 15,269 - BACOVA_00581 0.15 +1.5 15,270 + BACOVA_00581 0.15 +0.2 15,270 + BACOVA_00581 0.15 -1.5 15,270 + BACOVA_00581 0.15 -0.3 15,271 - BACOVA_00581 0.15 +0.1 15,300 + BACOVA_00581 0.21 -0.9 15,301 - BACOVA_00581 0.21 -1.5 15,301 - BACOVA_00581 0.21 +0.9 15,304 + BACOVA_00581 0.22 +0.9 15,473 - BACOVA_00581 0.55 -0.9 15,473 - BACOVA_00581 0.55 +0.8 15,497 + BACOVA_00581 0.60 -1.2 15,497 + BACOVA_00581 0.60 -1.0 15,497 + BACOVA_00581 0.60 -0.0 15,497 + BACOVA_00581 0.60 -0.3 15,498 - BACOVA_00581 0.60 -0.4 15,498 - BACOVA_00581 0.60 -0.5 15,517 + BACOVA_00581 0.64 +0.1 15,522 + BACOVA_00581 0.65 +2.7 15,523 - BACOVA_00581 0.65 -1.6 15,523 - BACOVA_00581 0.65 -1.3 15,523 - BACOVA_00581 0.65 -1.4 15,530 - BACOVA_00581 0.66 -0.8 15,588 + BACOVA_00581 0.78 -1.3 15,588 + BACOVA_00581 0.78 -0.3 15,699 - +0.5 15,763 - +1.9 15,766 - -0.1 15,778 - -0.9 15,806 + +0.9 15,826 + +0.5 15,826 + +1.0 15,826 + -0.6 15,827 - +1.0 15,830 + +0.9 15,830 + +0.0 15,831 - -0.3 15,832 + +0.5 15,833 - -0.4 15,833 - +0.9 15,837 + +0.9 15,846 + -1.4 15,847 - -0.3 15,952 - +0.6 15,952 - -0.8 15,954 + +2.2 15,956 + +0.2 16,012 + -1.1 16,017 + -1.1 16,018 - +1.6 16,022 - -0.3 16,040 + -1.5 16,040 + -0.4 16,040 + -0.3 16,041 - +1.4 16,041 - -0.9 16,041 - -2.2 16,041 - -1.1 16,054 + BACOVA_00582 0.10 +0.7 16,055 - BACOVA_00582 0.10 -0.4 16,055 - BACOVA_00582 0.10 -0.3 16,096 + BACOVA_00582 0.12 +0.6 16,097 - BACOVA_00582 0.12 -0.6 16,114 + BACOVA_00582 0.13 +1.1 16,114 + BACOVA_00582 0.13 +0.4 16,177 + BACOVA_00582 0.15 +0.5 16,191 + BACOVA_00582 0.16 -0.9 16,192 - BACOVA_00582 0.16 +0.5 16,325 - BACOVA_00582 0.22 +0.6 16,426 + BACOVA_00582 0.27 +1.5 16,542 + BACOVA_00582 0.32 +0.3 16,543 - BACOVA_00582 0.32 +0.1 16,604 - BACOVA_00582 0.34 +0.2 16,604 - BACOVA_00582 0.34 -0.1 16,626 + BACOVA_00582 0.35 -0.2 16,626 + BACOVA_00582 0.35 +0.0 16,628 + BACOVA_00582 0.35 -0.7 16,691 + BACOVA_00582 0.38 +0.6
Or see this region's nucleotide sequence