Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15710

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_15705 and oapA are separated by 13 nucleotidesoapA and tyrS are separated by 184 nucleotides OKGIIK_15705: OKGIIK_15705 - anhydro-N-acetylmuramic acid kinase, at 3,429,599 to 3,430,729 _15705 OKGIIK_15710: oapA - peptidase M23, at 3,430,743 to 3,432,188 oapA OKGIIK_15715: tyrS - tyrosine--tRNA ligase, at 3,432,373 to 3,433,584 tyrS Position (kb) 3430 3431 3432 3433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3429.987 kb on + strand, within OKGIIK_15705at 3429.987 kb on + strand, within OKGIIK_15705at 3429.988 kb on - strand, within OKGIIK_15705at 3429.988 kb on - strand, within OKGIIK_15705at 3429.988 kb on - strand, within OKGIIK_15705at 3429.988 kb on - strand, within OKGIIK_15705at 3429.988 kb on - strand, within OKGIIK_15705at 3430.026 kb on + strand, within OKGIIK_15705at 3430.026 kb on + strand, within OKGIIK_15705at 3430.026 kb on + strand, within OKGIIK_15705at 3430.027 kb on - strand, within OKGIIK_15705at 3430.027 kb on - strand, within OKGIIK_15705at 3430.027 kb on - strand, within OKGIIK_15705at 3430.027 kb on - strand, within OKGIIK_15705at 3430.027 kb on - strand, within OKGIIK_15705at 3430.083 kb on + strand, within OKGIIK_15705at 3430.083 kb on + strand, within OKGIIK_15705at 3430.083 kb on + strand, within OKGIIK_15705at 3430.084 kb on - strand, within OKGIIK_15705at 3430.084 kb on - strand, within OKGIIK_15705at 3430.084 kb on - strand, within OKGIIK_15705at 3430.084 kb on - strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.592 kb on + strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.593 kb on - strand, within OKGIIK_15705at 3430.638 kb on - strandat 3430.638 kb on - strandat 3430.707 kb on + strandat 3430.707 kb on + strandat 3430.707 kb on + strandat 3430.707 kb on + strandat 3430.708 kb on - strandat 3430.708 kb on - strandat 3430.708 kb on - strandat 3430.708 kb on - strandat 3430.708 kb on - strandat 3430.708 kb on - strandat 3430.933 kb on + strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.934 kb on - strand, within oapAat 3430.975 kb on + strand, within oapAat 3430.976 kb on - strand, within oapAat 3430.976 kb on - strand, within oapAat 3430.976 kb on - strand, within oapAat 3430.976 kb on - strand, within oapAat 3431.048 kb on - strand, within oapAat 3431.048 kb on - strand, within oapAat 3431.078 kb on + strand, within oapAat 3431.095 kb on + strand, within oapAat 3431.170 kb on + strand, within oapAat 3431.170 kb on + strand, within oapAat 3431.171 kb on - strand, within oapAat 3431.171 kb on - strand, within oapAat 3431.171 kb on - strand, within oapAat 3431.305 kb on + strand, within oapAat 3431.306 kb on - strand, within oapAat 3431.306 kb on - strand, within oapAat 3431.306 kb on - strand, within oapAat 3431.306 kb on - strand, within oapAat 3431.314 kb on + strand, within oapAat 3431.314 kb on + strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.315 kb on - strand, within oapAat 3431.349 kb on - strand, within oapAat 3431.350 kb on + strand, within oapAat 3431.351 kb on - strand, within oapAat 3431.351 kb on - strand, within oapAat 3431.351 kb on - strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.419 kb on + strand, within oapAat 3431.420 kb on - strand, within oapAat 3431.420 kb on - strand, within oapAat 3431.420 kb on - strand, within oapAat 3431.420 kb on - strand, within oapAat 3431.420 kb on - strand, within oapAat 3431.420 kb on - strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.431 kb on + strand, within oapAat 3431.432 kb on - strand, within oapAat 3431.432 kb on - strand, within oapAat 3431.432 kb on - strand, within oapAat 3431.432 kb on - strand, within oapAat 3431.432 kb on - strand, within oapAat 3431.432 kb on - strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.485 kb on + strand, within oapAat 3431.486 kb on - strand, within oapAat 3431.486 kb on - strand, within oapAat 3431.486 kb on - strand, within oapAat 3431.486 kb on - strand, within oapAat 3431.551 kb on + strand, within oapAat 3431.551 kb on + strand, within oapAat 3431.551 kb on + strand, within oapAat 3431.551 kb on + strand, within oapAat 3431.552 kb on - strand, within oapAat 3431.552 kb on - strand, within oapAat 3431.552 kb on - strand, within oapAat 3431.552 kb on - strand, within oapAat 3431.825 kb on + strand, within oapAat 3431.825 kb on + strand, within oapAat 3431.826 kb on - strand, within oapAat 3431.856 kb on + strand, within oapAat 3431.856 kb on + strand, within oapAat 3431.856 kb on + strand, within oapAat 3431.856 kb on + strand, within oapAat 3432.106 kb on + strandat 3432.106 kb on + strandat 3432.106 kb on + strandat 3432.106 kb on + strandat 3432.207 kb on + strandat 3432.228 kb on + strandat 3432.228 kb on + strandat 3432.228 kb on + strandat 3432.228 kb on + strandat 3432.229 kb on - strandat 3432.233 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.246 kb on + strandat 3432.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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3,429,987 + OKGIIK_15705 0.34 -0.7
3,429,987 + OKGIIK_15705 0.34 +0.3
3,429,988 - OKGIIK_15705 0.34 -1.9
3,429,988 - OKGIIK_15705 0.34 -1.7
3,429,988 - OKGIIK_15705 0.34 -1.4
3,429,988 - OKGIIK_15705 0.34 -0.1
3,429,988 - OKGIIK_15705 0.34 +0.0
3,430,026 + OKGIIK_15705 0.38 -1.1
3,430,026 + OKGIIK_15705 0.38 -0.1
3,430,026 + OKGIIK_15705 0.38 +0.2
3,430,027 - OKGIIK_15705 0.38 -0.5
3,430,027 - OKGIIK_15705 0.38 -1.7
3,430,027 - OKGIIK_15705 0.38 +1.6
3,430,027 - OKGIIK_15705 0.38 -2.0
3,430,027 - OKGIIK_15705 0.38 -0.5
3,430,083 + OKGIIK_15705 0.43 -0.1
3,430,083 + OKGIIK_15705 0.43 +1.9
3,430,083 + OKGIIK_15705 0.43 +1.2
3,430,084 - OKGIIK_15705 0.43 -0.9
3,430,084 - OKGIIK_15705 0.43 -1.1
3,430,084 - OKGIIK_15705 0.43 +1.5
3,430,084 - OKGIIK_15705 0.43 +0.5
3,430,592 + OKGIIK_15705 0.88 +0.7
3,430,592 + OKGIIK_15705 0.88 -0.0
3,430,592 + OKGIIK_15705 0.88 -0.7
3,430,592 + OKGIIK_15705 0.88 -0.3
3,430,592 + OKGIIK_15705 0.88 -0.7
3,430,592 + OKGIIK_15705 0.88 -0.1
3,430,592 + OKGIIK_15705 0.88 +0.5
3,430,593 - OKGIIK_15705 0.88 -0.1
3,430,593 - OKGIIK_15705 0.88 +2.0
3,430,593 - OKGIIK_15705 0.88 -3.1
3,430,593 - OKGIIK_15705 0.88 -0.1
3,430,593 - OKGIIK_15705 0.88 -1.3
3,430,593 - OKGIIK_15705 0.88 -1.4
3,430,593 - OKGIIK_15705 0.88 +0.5
3,430,638 - +0.3
3,430,638 - +0.5
3,430,707 + -1.1
3,430,707 + -3.0
3,430,707 + -1.4
3,430,707 + +0.9
3,430,708 - -1.1
3,430,708 - -1.4
3,430,708 - -0.4
3,430,708 - +1.1
3,430,708 - +0.4
3,430,708 - +0.3
3,430,933 + oapA OKGIIK_15710 0.13 +0.9
3,430,934 - oapA OKGIIK_15710 0.13 +0.1
3,430,934 - oapA OKGIIK_15710 0.13 -1.3
3,430,934 - oapA OKGIIK_15710 0.13 -0.1
3,430,934 - oapA OKGIIK_15710 0.13 -1.8
3,430,934 - oapA OKGIIK_15710 0.13 +1.2
3,430,934 - oapA OKGIIK_15710 0.13 -1.4
3,430,934 - oapA OKGIIK_15710 0.13 -1.9
3,430,975 + oapA OKGIIK_15710 0.16 +0.1
3,430,976 - oapA OKGIIK_15710 0.16 +0.6
3,430,976 - oapA OKGIIK_15710 0.16 -1.7
3,430,976 - oapA OKGIIK_15710 0.16 -1.3
3,430,976 - oapA OKGIIK_15710 0.16 -0.1
3,431,048 - oapA OKGIIK_15710 0.21 +2.1
3,431,048 - oapA OKGIIK_15710 0.21 +0.3
3,431,078 + oapA OKGIIK_15710 0.23 -0.9
3,431,095 + oapA OKGIIK_15710 0.24 -0.1
3,431,170 + oapA OKGIIK_15710 0.30 +1.9
3,431,170 + oapA OKGIIK_15710 0.30 +0.4
3,431,171 - oapA OKGIIK_15710 0.30 -0.5
3,431,171 - oapA OKGIIK_15710 0.30 -3.5
3,431,171 - oapA OKGIIK_15710 0.30 +0.3
3,431,305 + oapA OKGIIK_15710 0.39 +1.5
3,431,306 - oapA OKGIIK_15710 0.39 -2.2
3,431,306 - oapA OKGIIK_15710 0.39 -0.3
3,431,306 - oapA OKGIIK_15710 0.39 -1.7
3,431,306 - oapA OKGIIK_15710 0.39 -2.1
3,431,314 + oapA OKGIIK_15710 0.39 +0.9
3,431,314 + oapA OKGIIK_15710 0.39 +0.9
3,431,315 - oapA OKGIIK_15710 0.40 -1.7
3,431,315 - oapA OKGIIK_15710 0.40 +0.0
3,431,315 - oapA OKGIIK_15710 0.40 -0.6
3,431,315 - oapA OKGIIK_15710 0.40 +0.3
3,431,315 - oapA OKGIIK_15710 0.40 +0.1
3,431,315 - oapA OKGIIK_15710 0.40 -1.9
3,431,315 - oapA OKGIIK_15710 0.40 -0.7
3,431,349 - oapA OKGIIK_15710 0.42 +0.3
3,431,350 + oapA OKGIIK_15710 0.42 -1.2
3,431,351 - oapA OKGIIK_15710 0.42 -1.5
3,431,351 - oapA OKGIIK_15710 0.42 -0.4
3,431,351 - oapA OKGIIK_15710 0.42 -0.8
3,431,419 + oapA OKGIIK_15710 0.47 -0.7
3,431,419 + oapA OKGIIK_15710 0.47 -1.4
3,431,419 + oapA OKGIIK_15710 0.47 -1.7
3,431,419 + oapA OKGIIK_15710 0.47 +0.5
3,431,419 + oapA OKGIIK_15710 0.47 +2.5
3,431,419 + oapA OKGIIK_15710 0.47 -1.4
3,431,419 + oapA OKGIIK_15710 0.47 +0.6
3,431,420 - oapA OKGIIK_15710 0.47 +1.3
3,431,420 - oapA OKGIIK_15710 0.47 +0.0
3,431,420 - oapA OKGIIK_15710 0.47 +1.6
3,431,420 - oapA OKGIIK_15710 0.47 -0.1
3,431,420 - oapA OKGIIK_15710 0.47 +1.3
3,431,420 - oapA OKGIIK_15710 0.47 -0.7
3,431,431 + oapA OKGIIK_15710 0.48 -0.1
3,431,431 + oapA OKGIIK_15710 0.48 -1.4
3,431,431 + oapA OKGIIK_15710 0.48 -1.0
3,431,431 + oapA OKGIIK_15710 0.48 -0.1
3,431,431 + oapA OKGIIK_15710 0.48 +2.1
3,431,431 + oapA OKGIIK_15710 0.48 -1.0
3,431,431 + oapA OKGIIK_15710 0.48 -1.9
3,431,431 + oapA OKGIIK_15710 0.48 -1.2
3,431,432 - oapA OKGIIK_15710 0.48 -1.2
3,431,432 - oapA OKGIIK_15710 0.48 +0.1
3,431,432 - oapA OKGIIK_15710 0.48 +0.3
3,431,432 - oapA OKGIIK_15710 0.48 -2.4
3,431,432 - oapA OKGIIK_15710 0.48 -1.9
3,431,432 - oapA OKGIIK_15710 0.48 +0.9
3,431,485 + oapA OKGIIK_15710 0.51 -0.9
3,431,485 + oapA OKGIIK_15710 0.51 -0.9
3,431,485 + oapA OKGIIK_15710 0.51 -1.4
3,431,485 + oapA OKGIIK_15710 0.51 -1.7
3,431,485 + oapA OKGIIK_15710 0.51 +0.5
3,431,485 + oapA OKGIIK_15710 0.51 +2.9
3,431,485 + oapA OKGIIK_15710 0.51 -2.6
3,431,485 + oapA OKGIIK_15710 0.51 -1.7
3,431,485 + oapA OKGIIK_15710 0.51 -1.4
3,431,485 + oapA OKGIIK_15710 0.51 -2.3
3,431,485 + oapA OKGIIK_15710 0.51 -1.0
3,431,485 + oapA OKGIIK_15710 0.51 -2.1
3,431,486 - oapA OKGIIK_15710 0.51 +0.9
3,431,486 - oapA OKGIIK_15710 0.51 +3.5
3,431,486 - oapA OKGIIK_15710 0.51 -0.5
3,431,486 - oapA OKGIIK_15710 0.51 -1.4
3,431,551 + oapA OKGIIK_15710 0.56 +0.2
3,431,551 + oapA OKGIIK_15710 0.56 -0.4
3,431,551 + oapA OKGIIK_15710 0.56 -0.4
3,431,551 + oapA OKGIIK_15710 0.56 -0.1
3,431,552 - oapA OKGIIK_15710 0.56 +1.3
3,431,552 - oapA OKGIIK_15710 0.56 +1.3
3,431,552 - oapA OKGIIK_15710 0.56 -0.3
3,431,552 - oapA OKGIIK_15710 0.56 -0.4
3,431,825 + oapA OKGIIK_15710 0.75 -0.1
3,431,825 + oapA OKGIIK_15710 0.75 -1.1
3,431,826 - oapA OKGIIK_15710 0.75 -2.0
3,431,856 + oapA OKGIIK_15710 0.77 +3.0
3,431,856 + oapA OKGIIK_15710 0.77 +2.5
3,431,856 + oapA OKGIIK_15710 0.77 -0.4
3,431,856 + oapA OKGIIK_15710 0.77 -0.1
3,432,106 + -2.8
3,432,106 + -0.1
3,432,106 + +0.3
3,432,106 + -0.3
3,432,207 + +0.9
3,432,228 + -0.2
3,432,228 + +1.3
3,432,228 + +0.9
3,432,228 + -0.7
3,432,229 - +0.9
3,432,233 + +0.9
3,432,246 + -0.1
3,432,246 + +0.7
3,432,246 + -1.4
3,432,246 + -1.5
3,432,246 + -0.3
3,432,246 + -1.1
3,432,246 + -1.4
3,432,246 + +0.1
3,432,246 + -0.4
3,432,246 + +1.5
3,432,246 + +1.6
3,432,246 + +1.9
3,432,246 + +1.1
3,432,246 + -0.1
3,432,307 + -2.0

Or see this region's nucleotide sequence