Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_14975 and OKGIIK_14980 overlap by 4 nucleotides OKGIIK_14980 and OKGIIK_14985 overlap by 4 nucleotides OKGIIK_14985 and OKGIIK_14990 are separated by 23 nucleotides OKGIIK_14990 and OKGIIK_14995 are separated by 53 nucleotides
OKGIIK_14975: OKGIIK_14975 - AI-2E family transporter, at 3,263,039 to 3,264,229
_14975
OKGIIK_14980: OKGIIK_14980 - DUF883 domain-containing protein, at 3,264,226 to 3,264,561
_14980
OKGIIK_14985: OKGIIK_14985 - hypothetical protein, at 3,264,558 to 3,265,037
_14985
OKGIIK_14990: OKGIIK_14990 - DUF883 domain-containing protein, at 3,265,061 to 3,265,423
_14990
OKGIIK_14995: OKGIIK_14995 - UPF0391 membrane protein DEO45_00650, at 3,265,477 to 3,265,632
_14995
Position (kb)
3264
3265 Strain fitness (log2 ratio)
-2
-1
0
1 at 3263.304 kb on + strand, within OKGIIK_14975 at 3263.304 kb on + strand, within OKGIIK_14975 at 3263.304 kb on + strand, within OKGIIK_14975 at 3263.305 kb on - strand, within OKGIIK_14975 at 3263.305 kb on - strand, within OKGIIK_14975 at 3263.305 kb on - strand, within OKGIIK_14975 at 3263.305 kb on - strand, within OKGIIK_14975 at 3263.355 kb on + strand, within OKGIIK_14975 at 3263.355 kb on + strand, within OKGIIK_14975 at 3263.355 kb on + strand, within OKGIIK_14975 at 3263.355 kb on + strand, within OKGIIK_14975 at 3263.356 kb on - strand, within OKGIIK_14975 at 3263.356 kb on - strand, within OKGIIK_14975 at 3263.356 kb on - strand, within OKGIIK_14975 at 3263.356 kb on - strand, within OKGIIK_14975 at 3263.356 kb on - strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.415 kb on + strand, within OKGIIK_14975 at 3263.416 kb on - strand, within OKGIIK_14975 at 3263.416 kb on - strand, within OKGIIK_14975 at 3263.416 kb on - strand, within OKGIIK_14975 at 3263.416 kb on - strand, within OKGIIK_14975 at 3263.416 kb on - strand, within OKGIIK_14975 at 3263.481 kb on + strand, within OKGIIK_14975 at 3263.481 kb on + strand, within OKGIIK_14975 at 3263.481 kb on + strand, within OKGIIK_14975 at 3263.481 kb on + strand, within OKGIIK_14975 at 3263.482 kb on - strand, within OKGIIK_14975 at 3263.490 kb on - strand, within OKGIIK_14975 at 3263.490 kb on - strand, within OKGIIK_14975 at 3263.535 kb on + strand, within OKGIIK_14975 at 3263.535 kb on + strand, within OKGIIK_14975 at 3263.536 kb on - strand, within OKGIIK_14975 at 3263.586 kb on + strand, within OKGIIK_14975 at 3263.586 kb on + strand, within OKGIIK_14975 at 3263.586 kb on + strand, within OKGIIK_14975 at 3263.586 kb on + strand, within OKGIIK_14975 at 3263.586 kb on + strand, within OKGIIK_14975 at 3263.587 kb on - strand, within OKGIIK_14975 at 3263.587 kb on - strand, within OKGIIK_14975 at 3263.587 kb on - strand, within OKGIIK_14975 at 3263.587 kb on - strand, within OKGIIK_14975 at 3263.587 kb on - strand, within OKGIIK_14975 at 3263.625 kb on - strand, within OKGIIK_14975 at 3264.024 kb on + strand, within OKGIIK_14975 at 3264.024 kb on + strand, within OKGIIK_14975 at 3264.024 kb on + strand, within OKGIIK_14975 at 3264.024 kb on + strand, within OKGIIK_14975 at 3264.024 kb on + strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.025 kb on - strand, within OKGIIK_14975 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.453 kb on + strand, within OKGIIK_14980 at 3264.454 kb on - strand, within OKGIIK_14980 at 3264.454 kb on - strand, within OKGIIK_14980 at 3264.454 kb on - strand, within OKGIIK_14980 at 3264.454 kb on - strand, within OKGIIK_14980 at 3264.486 kb on + strand, within OKGIIK_14980 at 3264.486 kb on + strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.487 kb on - strand, within OKGIIK_14980 at 3264.807 kb on + strand, within OKGIIK_14985 at 3264.807 kb on + strand, within OKGIIK_14985 at 3264.807 kb on + strand, within OKGIIK_14985 at 3264.807 kb on + strand, within OKGIIK_14985 at 3264.808 kb on - strand, within OKGIIK_14985 at 3264.808 kb on - strand, within OKGIIK_14985 at 3264.808 kb on - strand, within OKGIIK_14985 at 3264.808 kb on - strand, within OKGIIK_14985 at 3264.808 kb on - strand, within OKGIIK_14985 at 3264.808 kb on - strand, within OKGIIK_14985 at 3265.140 kb on + strand, within OKGIIK_14990 at 3265.140 kb on + strand, within OKGIIK_14990 at 3265.140 kb on + strand, within OKGIIK_14990 at 3265.140 kb on + strand, within OKGIIK_14990 at 3265.140 kb on + strand, within OKGIIK_14990 at 3265.141 kb on - strand, within OKGIIK_14990 at 3265.141 kb on - strand, within OKGIIK_14990 at 3265.141 kb on - strand, within OKGIIK_14990 at 3265.141 kb on - strand, within OKGIIK_14990 at 3265.141 kb on - strand, within OKGIIK_14990 at 3265.447 kb on + strand at 3265.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 3,263,304 + OKGIIK_14975 0.22 +0.5 3,263,304 + OKGIIK_14975 0.22 -0.2 3,263,304 + OKGIIK_14975 0.22 -0.4 3,263,305 - OKGIIK_14975 0.22 -0.5 3,263,305 - OKGIIK_14975 0.22 -1.7 3,263,305 - OKGIIK_14975 0.22 -0.7 3,263,305 - OKGIIK_14975 0.22 +0.6 3,263,355 + OKGIIK_14975 0.27 +0.7 3,263,355 + OKGIIK_14975 0.27 -1.0 3,263,355 + OKGIIK_14975 0.27 +0.9 3,263,355 + OKGIIK_14975 0.27 -0.7 3,263,356 - OKGIIK_14975 0.27 +0.3 3,263,356 - OKGIIK_14975 0.27 +0.2 3,263,356 - OKGIIK_14975 0.27 -0.3 3,263,356 - OKGIIK_14975 0.27 +0.0 3,263,356 - OKGIIK_14975 0.27 -2.3 3,263,415 + OKGIIK_14975 0.32 -2.4 3,263,415 + OKGIIK_14975 0.32 +0.0 3,263,415 + OKGIIK_14975 0.32 -1.7 3,263,415 + OKGIIK_14975 0.32 -2.5 3,263,415 + OKGIIK_14975 0.32 +0.2 3,263,415 + OKGIIK_14975 0.32 -0.8 3,263,415 + OKGIIK_14975 0.32 -1.9 3,263,415 + OKGIIK_14975 0.32 -0.9 3,263,415 + OKGIIK_14975 0.32 -0.2 3,263,415 + OKGIIK_14975 0.32 -1.7 3,263,415 + OKGIIK_14975 0.32 -1.5 3,263,415 + OKGIIK_14975 0.32 +0.0 3,263,415 + OKGIIK_14975 0.32 -2.1 3,263,415 + OKGIIK_14975 0.32 -0.6 3,263,416 - OKGIIK_14975 0.32 -0.2 3,263,416 - OKGIIK_14975 0.32 -0.1 3,263,416 - OKGIIK_14975 0.32 -0.5 3,263,416 - OKGIIK_14975 0.32 -1.2 3,263,416 - OKGIIK_14975 0.32 +0.9 3,263,481 + OKGIIK_14975 0.37 -0.1 3,263,481 + OKGIIK_14975 0.37 -0.3 3,263,481 + OKGIIK_14975 0.37 -0.4 3,263,481 + OKGIIK_14975 0.37 -0.3 3,263,482 - OKGIIK_14975 0.37 -0.7 3,263,490 - OKGIIK_14975 0.38 -1.4 3,263,490 - OKGIIK_14975 0.38 -0.9 3,263,535 + OKGIIK_14975 0.42 -0.2 3,263,535 + OKGIIK_14975 0.42 -0.3 3,263,536 - OKGIIK_14975 0.42 -0.6 3,263,586 + OKGIIK_14975 0.46 -1.7 3,263,586 + OKGIIK_14975 0.46 -0.1 3,263,586 + OKGIIK_14975 0.46 -0.3 3,263,586 + OKGIIK_14975 0.46 -1.3 3,263,586 + OKGIIK_14975 0.46 -0.2 3,263,587 - OKGIIK_14975 0.46 -0.7 3,263,587 - OKGIIK_14975 0.46 +0.3 3,263,587 - OKGIIK_14975 0.46 +0.9 3,263,587 - OKGIIK_14975 0.46 -0.9 3,263,587 - OKGIIK_14975 0.46 -0.8 3,263,625 - OKGIIK_14975 0.49 -2.1 3,264,024 + OKGIIK_14975 0.83 -1.2 3,264,024 + OKGIIK_14975 0.83 +0.5 3,264,024 + OKGIIK_14975 0.83 -0.9 3,264,024 + OKGIIK_14975 0.83 -1.4 3,264,024 + OKGIIK_14975 0.83 +0.2 3,264,025 - OKGIIK_14975 0.83 +1.3 3,264,025 - OKGIIK_14975 0.83 -0.2 3,264,025 - OKGIIK_14975 0.83 +0.7 3,264,025 - OKGIIK_14975 0.83 +0.5 3,264,025 - OKGIIK_14975 0.83 +0.5 3,264,025 - OKGIIK_14975 0.83 +1.6 3,264,025 - OKGIIK_14975 0.83 +1.5 3,264,025 - OKGIIK_14975 0.83 -0.9 3,264,025 - OKGIIK_14975 0.83 -1.7 3,264,025 - OKGIIK_14975 0.83 -1.4 3,264,025 - OKGIIK_14975 0.83 -1.7 3,264,453 + OKGIIK_14980 0.68 -0.1 3,264,453 + OKGIIK_14980 0.68 -0.7 3,264,453 + OKGIIK_14980 0.68 -1.2 3,264,453 + OKGIIK_14980 0.68 -0.2 3,264,453 + OKGIIK_14980 0.68 -0.8 3,264,453 + OKGIIK_14980 0.68 +0.7 3,264,453 + OKGIIK_14980 0.68 -1.4 3,264,454 - OKGIIK_14980 0.68 -0.7 3,264,454 - OKGIIK_14980 0.68 -1.1 3,264,454 - OKGIIK_14980 0.68 +0.6 3,264,454 - OKGIIK_14980 0.68 +0.7 3,264,486 + OKGIIK_14980 0.77 -0.3 3,264,486 + OKGIIK_14980 0.77 +0.8 3,264,487 - OKGIIK_14980 0.78 -0.4 3,264,487 - OKGIIK_14980 0.78 -1.7 3,264,487 - OKGIIK_14980 0.78 -0.4 3,264,487 - OKGIIK_14980 0.78 -1.1 3,264,487 - OKGIIK_14980 0.78 -0.6 3,264,487 - OKGIIK_14980 0.78 -1.7 3,264,487 - OKGIIK_14980 0.78 -0.7 3,264,487 - OKGIIK_14980 0.78 -1.0 3,264,807 + OKGIIK_14985 0.52 -0.1 3,264,807 + OKGIIK_14985 0.52 -0.3 3,264,807 + OKGIIK_14985 0.52 -1.4 3,264,807 + OKGIIK_14985 0.52 -0.8 3,264,808 - OKGIIK_14985 0.52 -0.5 3,264,808 - OKGIIK_14985 0.52 -0.3 3,264,808 - OKGIIK_14985 0.52 -0.7 3,264,808 - OKGIIK_14985 0.52 -0.1 3,264,808 - OKGIIK_14985 0.52 -0.3 3,264,808 - OKGIIK_14985 0.52 +1.6 3,265,140 + OKGIIK_14990 0.22 -1.4 3,265,140 + OKGIIK_14990 0.22 +1.1 3,265,140 + OKGIIK_14990 0.22 -2.2 3,265,140 + OKGIIK_14990 0.22 +0.7 3,265,140 + OKGIIK_14990 0.22 +0.8 3,265,141 - OKGIIK_14990 0.22 +0.7 3,265,141 - OKGIIK_14990 0.22 -2.1 3,265,141 - OKGIIK_14990 0.22 +0.4 3,265,141 - OKGIIK_14990 0.22 +0.2 3,265,141 - OKGIIK_14990 0.22 +0.9 3,265,447 + -1.1 3,265,448 - -0.1
Or see this region's nucleotide sequence