Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13445

Experiment: R2A_PIPES pH 4.25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.25
2,904,349	+		OKGIIK_13440	0.54	+1.9
2,904,365	+		OKGIIK_13440	0.55	-1.9
2,904,365	+		OKGIIK_13440	0.55	-1.2
2,904,365	+		OKGIIK_13440	0.55	-1.2
2,904,365	+		OKGIIK_13440	0.55	+0.6
2,904,365	+		OKGIIK_13440	0.55	-0.1
2,904,365	+		OKGIIK_13440	0.55	-0.9
2,904,366	-		OKGIIK_13440	0.55	-0.0
2,904,366	-		OKGIIK_13440	0.55	-2.4
2,904,366	-		OKGIIK_13440	0.55	+0.4
2,904,374	+		OKGIIK_13440	0.56	-1.9
2,904,374	+		OKGIIK_13440	0.56	-1.0
2,904,374	+		OKGIIK_13440	0.56	-1.9
2,904,374	+		OKGIIK_13440	0.56	-1.1
2,904,375	-		OKGIIK_13440	0.56	+0.7
2,904,519	-		OKGIIK_13440	0.65	-1.5
2,904,519	-		OKGIIK_13440	0.65	-1.2
2,904,519	-		OKGIIK_13440	0.65	+1.5
2,904,619	+		OKGIIK_13440	0.71	+1.7
2,904,619	+		OKGIIK_13440	0.71	+0.3
2,904,619	+		OKGIIK_13440	0.71	-0.5
2,904,619	+		OKGIIK_13440	0.71	-1.8
2,904,619	+		OKGIIK_13440	0.71	-0.9
2,904,619	+		OKGIIK_13440	0.71	-1.3
2,904,619	+		OKGIIK_13440	0.71	-1.1
2,904,620	-		OKGIIK_13440	0.71	-1.7
2,904,620	-		OKGIIK_13440	0.71	-0.8
2,904,620	-		OKGIIK_13440	0.71	+0.4
2,904,620	-		OKGIIK_13440	0.71	-0.5
2,904,620	-		OKGIIK_13440	0.71	-0.7
2,904,620	-		OKGIIK_13440	0.71	-0.2
2,904,620	-		OKGIIK_13440	0.71	-1.5
2,904,620	-		OKGIIK_13440	0.71	-1.0
2,904,637	-		OKGIIK_13440	0.72	-0.1
2,904,825	-		OKGIIK_13440	0.84	-2.3
2,904,825	-		OKGIIK_13440	0.84	-0.5
2,904,825	-		OKGIIK_13440	0.84	-1.1
2,904,859	+		OKGIIK_13440	0.86	-2.3
2,904,899	+		OKGIIK_13440	0.89	-1.1
2,904,912	-		OKGIIK_13440	0.90	-1.8
2,904,912	-		OKGIIK_13440	0.90	+1.5
2,904,921	-				+0.6
2,904,921	-				-1.9
2,904,947	+				-2.1
2,904,947	+				-1.7
2,904,947	+				-1.1
2,904,947	+				-1.8
2,904,947	+				-0.9
2,904,948	-				+0.5
2,904,948	-				-0.2
2,904,948	-				-2.3
2,904,948	-				-0.4
2,904,948	-				-0.7
2,904,966	+				-0.4
2,904,967	-				-0.3
2,904,967	-				-1.7
2,904,967	-				-1.9
2,904,967	-				-1.8
2,904,967	-				-1.1
2,904,974	+				-0.5
2,904,974	+				-0.1
2,904,975	-				-0.1
2,904,975	-				+0.5
2,904,975	-				-1.0
2,904,975	-				+0.2
2,904,975	-				-2.6
2,904,975	-				-0.5
2,904,983	+				-1.3
2,904,984	-				-1.1
2,905,086	+				-0.5
2,905,086	+				+1.2
2,905,086	+				-1.6
2,905,086	+				-0.3
2,905,086	+				-0.2
2,905,086	+				-0.5
2,905,086	+				-0.1
2,905,086	+				-0.4
2,905,086	+				-1.3
2,905,302	-		OKGIIK_13445	0.44	+0.7
2,905,302	-		OKGIIK_13445	0.44	-1.3
2,905,382	+		OKGIIK_13445	0.61	-1.9
2,905,382	+		OKGIIK_13445	0.61	-2.4
2,905,382	+		OKGIIK_13445	0.61	-2.4
2,905,382	+		OKGIIK_13445	0.61	+0.2
2,905,382	+		OKGIIK_13445	0.61	-0.1
2,905,382	+		OKGIIK_13445	0.61	-0.4
2,905,382	+		OKGIIK_13445	0.61	-0.1
2,905,382	+		OKGIIK_13445	0.61	-0.3
2,905,382	+		OKGIIK_13445	0.61	-1.8
2,905,382	+		OKGIIK_13445	0.61	-1.1
2,905,383	-		OKGIIK_13445	0.61	-0.8
2,905,383	-		OKGIIK_13445	0.61	-0.7
2,905,383	-		OKGIIK_13445	0.61	-0.4
2,905,383	-		OKGIIK_13445	0.61	-1.1
2,905,383	-		OKGIIK_13445	0.61	-0.4
2,905,383	-		OKGIIK_13445	0.61	-0.9
2,905,383	-		OKGIIK_13445	0.61	-2.7
2,905,383	-		OKGIIK_13445	0.61	-0.4
2,905,395	+		OKGIIK_13445	0.64	-0.1
2,905,395	+		OKGIIK_13445	0.64	-1.1
2,905,396	-		OKGIIK_13445	0.64	-1.3
2,905,396	-		OKGIIK_13445	0.64	-1.1
2,905,396	-		OKGIIK_13445	0.64	+0.5
2,905,414	+		OKGIIK_13445	0.68	-0.0
2,905,415	-		OKGIIK_13445	0.68	-0.4
2,905,436	+		OKGIIK_13445	0.72	-1.9
2,905,437	-		OKGIIK_13445	0.73	-0.8
2,905,519	+				-1.7
2,905,555	+				+0.6
2,905,555	+				-2.1
2,905,555	+				-1.1
2,905,556	-				-0.2
2,905,556	-				-0.4
2,905,556	-				-0.8
2,905,556	-				-1.9
2,905,556	-				-0.7
2,905,556	-				-1.1
2,905,689	+				+0.2
2,905,690	-				-2.8
2,905,690	-				-0.2
2,905,706	+				+0.9
2,905,707	-				-0.5
2,905,707	-				-0.3
2,905,710	+				-1.9
2,905,710	+				-0.4
2,905,710	+				-0.5
2,905,710	+				-0.6
2,905,710	+				-0.7
2,905,711	-				+0.4
2,905,711	-				+0.3
2,905,711	-				+0.2
2,905,711	-				-0.3
2,905,711	-				-0.3
2,905,718	+				+0.8
2,905,718	+				-1.1
2,905,718	+				+0.2
2,905,718	+				+0.7
2,905,718	+				-0.8
2,905,718	+				+0.9
2,905,718	+				-2.4
2,905,719	-				-0.7
2,905,719	-				-0.3
2,905,719	-				-0.5
2,905,719	-				+1.8
2,905,719	-				-0.5
2,905,719	-				+0.2
2,905,719	-				-1.2
2,905,730	+				-2.1
2,905,735	+				-1.3
2,905,736	-				+0.6
2,905,736	-				+2.2
2,905,749	-				-0.0
2,905,749	-				-1.1
2,905,760	+				-1.2
2,905,760	+				-1.1
2,905,896	+				+0.3
2,905,896	+				-0.8
2,905,896	+				+0.2
2,905,896	+				-0.7
2,905,897	-				-0.3
2,905,897	-				-0.3
2,905,897	-				+1.1
2,905,897	-				+0.9
2,905,897	-				-0.1
2,905,897	-				-0.2
2,905,897	-				+1.1
2,905,897	-				+1.1
2,905,897	-				-1.6
2,905,897	-				+0.0
2,905,897	-				+0.2
2,905,897	-				+1.5
2,905,897	-				+1.6
2,905,897	-				+0.2
2,905,897	-				+0.2
2,906,011	+				-0.4
2,906,011	+				-0.9
2,906,011	+				+0.3
2,906,011	+				-1.9
2,906,011	+				-1.3
2,906,011	+				+0.4
2,906,011	+				+0.5
2,906,012	-				-1.1
2,906,012	-				-0.3
2,906,012	-				-1.4
2,906,012	-				-1.7
2,906,012	-				+0.8
2,906,012	-				-1.4
2,906,012	-				-1.1
2,906,012	-				+0.0
2,906,012	-				-0.1
2,906,114	+				+0.4
2,906,116	-				-1.9
2,906,128	+				-0.1
2,906,128	+				-0.7
2,906,128	+				-0.5
2,906,129	-				-1.4
2,906,129	-				+0.1
2,906,129	-				+0.9
2,906,197	+				-0.5
2,906,199	+				-0.1
2,906,199	+				-0.4
2,906,199	+				-1.5
2,906,199	+				+1.1
2,906,199	+				+0.4
2,906,199	+				+0.7
2,906,200	-				-0.1
2,906,200	-				+1.2
2,906,200	-				+0.5
2,906,200	-				-0.9
2,906,200	-				-1.9
2,906,200	-				+0.5
2,906,200	-				+1.7
2,906,200	-				+0.2
2,906,219	+				+1.2
2,906,219	+				+0.6
2,906,248	+				+0.1
2,906,248	+				-0.0
2,906,248	+				-0.6
2,906,248	+				-0.7
2,906,248	+				-1.1
2,906,248	+				-0.1
2,906,248	+				+0.5
2,906,249	-				-1.2
2,906,249	-				+0.9
2,906,249	-				+0.9
2,906,249	-				-1.9
2,906,249	-				-2.6
2,906,249	-				-3.3
2,906,249	-				-0.1
2,906,249	-				-0.6
2,906,300	+				+0.5
2,906,300	+				-1.7
2,906,300	+				+1.5
2,906,300	+				-1.9
2,906,301	-				-0.1
2,906,301	-				+0.1
2,906,380	+				-1.0
2,906,380	+				-0.4
2,906,380	+				-1.1
2,906,380	+				-0.8
2,906,380	+				+0.7
2,906,381	-				-0.8
2,906,381	-				-2.4
2,906,381	-				-0.5
2,906,381	-				-1.0
2,906,381	-				-0.5
2,906,398	+				+1.5
2,906,422	+		OKGIIK_13450	0.11	-0.8
2,906,422	+		OKGIIK_13450	0.11	-1.4
2,906,423	-		OKGIIK_13450	0.11	-1.2
2,906,449	+		OKGIIK_13450	0.12	+0.2
2,906,450	-		OKGIIK_13450	0.12	-0.4
2,906,450	-		OKGIIK_13450	0.12	-1.6
2,906,450	-		OKGIIK_13450	0.12	-1.4
2,906,450	-		OKGIIK_13450	0.12	+0.0
2,906,450	-		OKGIIK_13450	0.12	+0.2
2,906,499	+		OKGIIK_13450	0.14	-0.1
2,906,500	-		OKGIIK_13450	0.15	-0.0
2,906,500	-		OKGIIK_13450	0.15	-1.0
2,906,547	+		OKGIIK_13450	0.17	-0.6
2,906,556	+		OKGIIK_13450	0.17	-0.7