Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11725

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsL and rsmH overlap by 4 nucleotidesrsmH and mraZ are separated by 42 nucleotidesmraZ and rsmI are separated by 780 nucleotides OKGIIK_11715: ftsL - cell division protein FtsL, at 2,522,751 to 2,523,020 ftsL OKGIIK_11720: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,523,017 to 2,523,958 rsmH OKGIIK_11725: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 2,524,001 to 2,524,447 mraZ OKGIIK_11735: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 2,525,228 to 2,526,064 rsmI Position (kb) 2524 2525Strain fitness (log2 ratio) -2 -1 0 1 2at 2524.003 kb on - strandat 2524.003 kb on - strandat 2524.003 kb on - strandat 2524.003 kb on - strandat 2524.003 kb on - strandat 2524.003 kb on - strandat 2524.003 kb on - strandat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.336 kb on - strand, within mraZat 2524.547 kb on - strandat 2524.547 kb on - strandat 2524.625 kb on - strandat 2524.629 kb on - strandat 2524.629 kb on - strandat 2524.629 kb on - strandat 2524.629 kb on - strandat 2525.150 kb on + strandat 2525.150 kb on + strandat 2525.150 kb on + strandat 2525.150 kb on + strandat 2525.151 kb on - strandat 2525.151 kb on - strandat 2525.151 kb on - strandat 2525.151 kb on - strandat 2525.151 kb on - strandat 2525.151 kb on - strandat 2525.208 kb on - strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.239 kb on + strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.240 kb on - strandat 2525.241 kb on + strandat 2525.241 kb on + strandat 2525.241 kb on + strandat 2525.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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2,524,003 - +0.9
2,524,003 - -0.3
2,524,003 - +1.0
2,524,003 - -0.3
2,524,003 - -1.0
2,524,003 - +1.0
2,524,003 - +2.1
2,524,336 - mraZ OKGIIK_11725 0.75 -0.6
2,524,336 - mraZ OKGIIK_11725 0.75 +1.0
2,524,336 - mraZ OKGIIK_11725 0.75 +0.0
2,524,336 - mraZ OKGIIK_11725 0.75 -1.1
2,524,336 - mraZ OKGIIK_11725 0.75 +0.0
2,524,336 - mraZ OKGIIK_11725 0.75 -1.0
2,524,336 - mraZ OKGIIK_11725 0.75 +0.1
2,524,336 - mraZ OKGIIK_11725 0.75 +0.6
2,524,336 - mraZ OKGIIK_11725 0.75 -0.5
2,524,336 - mraZ OKGIIK_11725 0.75 -0.1
2,524,336 - mraZ OKGIIK_11725 0.75 +1.0
2,524,336 - mraZ OKGIIK_11725 0.75 -0.3
2,524,336 - mraZ OKGIIK_11725 0.75 -0.3
2,524,547 - -0.2
2,524,547 - -0.5
2,524,625 - +0.0
2,524,629 - +0.2
2,524,629 - +0.2
2,524,629 - +1.5
2,524,629 - +0.4
2,525,150 + +0.7
2,525,150 + +0.2
2,525,150 + -2.5
2,525,150 + -1.3
2,525,151 - -2.2
2,525,151 - +0.0
2,525,151 - -2.5
2,525,151 - -0.8
2,525,151 - +0.6
2,525,151 - -0.3
2,525,208 - -1.1
2,525,239 + +0.3
2,525,239 + -0.3
2,525,239 + +0.2
2,525,239 + -1.3
2,525,239 + +1.0
2,525,239 + -0.2
2,525,239 + -0.1
2,525,239 + +0.9
2,525,239 + -0.5
2,525,239 + -0.5
2,525,240 - -1.8
2,525,240 - +1.4
2,525,240 - +0.0
2,525,240 - -1.0
2,525,240 - -2.3
2,525,240 - -0.0
2,525,240 - +0.0
2,525,240 - -0.3
2,525,241 + -1.5
2,525,241 + -0.6
2,525,241 + -0.4
2,525,242 - -0.7

Or see this region's nucleotide sequence