Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08905

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08895 and OKGIIK_08900 overlap by 4 nucleotidesOKGIIK_08900 and recT are separated by 28 nucleotidesrecT and OKGIIK_08910 are separated by 131 nucleotidesOKGIIK_08910 and OKGIIK_08915 are separated by 25 nucleotidesOKGIIK_08915 and OKGIIK_08920 overlap by 4 nucleotides OKGIIK_08895: OKGIIK_08895 - hypothetical protein, at 1,916,749 to 1,916,934 _08895 OKGIIK_08900: OKGIIK_08900 - YqaJ domain-containing protein, at 1,916,931 to 1,917,773 _08900 OKGIIK_08905: recT - recombination protein RecT, at 1,917,802 to 1,918,875 recT OKGIIK_08910: OKGIIK_08910 - hypothetical protein, at 1,919,007 to 1,919,471 _08910 OKGIIK_08915: OKGIIK_08915 - hypothetical protein, at 1,919,497 to 1,919,757 _08915 OKGIIK_08920: OKGIIK_08920 - hypothetical protein, at 1,919,754 to 1,919,972 _08920 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1917.036 kb on + strand, within OKGIIK_08900at 1917.036 kb on + strand, within OKGIIK_08900at 1917.037 kb on - strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.321 kb on + strand, within OKGIIK_08900at 1917.321 kb on + strand, within OKGIIK_08900at 1917.322 kb on - strand, within OKGIIK_08900at 1917.375 kb on + strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.541 kb on - strand, within OKGIIK_08900at 1917.772 kb on - strandat 1917.782 kb on - strandat 1917.782 kb on - strandat 1917.782 kb on - strandat 1917.782 kb on - strandat 1918.103 kb on - strand, within recTat 1918.103 kb on - strand, within recTat 1918.103 kb on - strand, within recTat 1918.253 kb on - strand, within recTat 1918.253 kb on - strand, within recTat 1918.273 kb on + strand, within recTat 1918.274 kb on - strand, within recTat 1918.274 kb on - strand, within recTat 1918.279 kb on + strand, within recTat 1918.349 kb on - strand, within recTat 1918.349 kb on - strand, within recTat 1918.468 kb on + strand, within recTat 1918.468 kb on + strand, within recTat 1918.469 kb on - strand, within recTat 1918.469 kb on - strand, within recTat 1918.469 kb on - strand, within recTat 1918.469 kb on - strand, within recTat 1918.549 kb on + strand, within recTat 1918.550 kb on - strand, within recTat 1918.550 kb on - strand, within recTat 1918.700 kb on + strand, within recTat 1918.838 kb on - strandat 1918.972 kb on - strandat 1919.018 kb on + strandat 1919.019 kb on - strandat 1919.019 kb on - strandat 1919.170 kb on - strand, within OKGIIK_08910at 1919.389 kb on - strand, within OKGIIK_08910at 1919.662 kb on + strand, within OKGIIK_08915at 1919.663 kb on - strand, within OKGIIK_08915at 1919.663 kb on - strand, within OKGIIK_08915at 1919.663 kb on - strand, within OKGIIK_08915

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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1,917,036 + OKGIIK_08900 0.12 -1.3
1,917,036 + OKGIIK_08900 0.12 -0.7
1,917,037 - OKGIIK_08900 0.13 -1.3
1,917,180 + OKGIIK_08900 0.30 -1.7
1,917,180 + OKGIIK_08900 0.30 -2.0
1,917,180 + OKGIIK_08900 0.30 -1.0
1,917,180 + OKGIIK_08900 0.30 +0.0
1,917,180 + OKGIIK_08900 0.30 +1.3
1,917,181 - OKGIIK_08900 0.30 -2.3
1,917,181 - OKGIIK_08900 0.30 +0.4
1,917,181 - OKGIIK_08900 0.30 +0.4
1,917,181 - OKGIIK_08900 0.30 +1.6
1,917,181 - OKGIIK_08900 0.30 -2.3
1,917,321 + OKGIIK_08900 0.46 +0.6
1,917,321 + OKGIIK_08900 0.46 -0.5
1,917,322 - OKGIIK_08900 0.46 +0.2
1,917,375 + OKGIIK_08900 0.53 -1.3
1,917,376 - OKGIIK_08900 0.53 +0.5
1,917,376 - OKGIIK_08900 0.53 -1.7
1,917,376 - OKGIIK_08900 0.53 +0.2
1,917,376 - OKGIIK_08900 0.53 -1.8
1,917,481 - OKGIIK_08900 0.65 +0.7
1,917,481 - OKGIIK_08900 0.65 -0.2
1,917,481 - OKGIIK_08900 0.65 +1.9
1,917,481 - OKGIIK_08900 0.65 -0.2
1,917,481 - OKGIIK_08900 0.65 -1.3
1,917,541 - OKGIIK_08900 0.72 -0.7
1,917,772 - +1.1
1,917,782 - +0.8
1,917,782 - -1.2
1,917,782 - -0.4
1,917,782 - +1.6
1,918,103 - recT OKGIIK_08905 0.28 -2.3
1,918,103 - recT OKGIIK_08905 0.28 +0.7
1,918,103 - recT OKGIIK_08905 0.28 +1.6
1,918,253 - recT OKGIIK_08905 0.42 -1.8
1,918,253 - recT OKGIIK_08905 0.42 +1.9
1,918,273 + recT OKGIIK_08905 0.44 +0.7
1,918,274 - recT OKGIIK_08905 0.44 -3.3
1,918,274 - recT OKGIIK_08905 0.44 -0.1
1,918,279 + recT OKGIIK_08905 0.44 +1.0
1,918,349 - recT OKGIIK_08905 0.51 +1.0
1,918,349 - recT OKGIIK_08905 0.51 +0.4
1,918,468 + recT OKGIIK_08905 0.62 +0.9
1,918,468 + recT OKGIIK_08905 0.62 +0.3
1,918,469 - recT OKGIIK_08905 0.62 +1.4
1,918,469 - recT OKGIIK_08905 0.62 +0.2
1,918,469 - recT OKGIIK_08905 0.62 -0.1
1,918,469 - recT OKGIIK_08905 0.62 +1.6
1,918,549 + recT OKGIIK_08905 0.70 +1.0
1,918,550 - recT OKGIIK_08905 0.70 -0.5
1,918,550 - recT OKGIIK_08905 0.70 +0.3
1,918,700 + recT OKGIIK_08905 0.84 -1.3
1,918,838 - +1.0
1,918,972 - +1.0
1,919,018 + +0.2
1,919,019 - -0.2
1,919,019 - +0.7
1,919,170 - OKGIIK_08910 0.35 +1.4
1,919,389 - OKGIIK_08910 0.82 -0.5
1,919,662 + OKGIIK_08915 0.63 -0.1
1,919,663 - OKGIIK_08915 0.64 +0.0
1,919,663 - OKGIIK_08915 0.64 -2.0
1,919,663 - OKGIIK_08915 0.64 -2.7

Or see this region's nucleotide sequence