Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08520

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08515 and OKGIIK_08520 are separated by 106 nucleotidesOKGIIK_08520 and OKGIIK_08525 overlap by 4 nucleotides OKGIIK_08515: OKGIIK_08515 - DNAase, at 1,864,173 to 1,864,940 _08515 OKGIIK_08520: OKGIIK_08520 - MarR family transcriptional regulator, at 1,865,047 to 1,865,544 _08520 OKGIIK_08525: OKGIIK_08525 - RND transporter, at 1,865,541 to 1,867,028 _08525 Position (kb) 1865 1866Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1864.102 kb on + strandat 1864.102 kb on + strandat 1864.102 kb on + strandat 1864.102 kb on + strandat 1864.102 kb on + strandat 1864.102 kb on + strandat 1864.103 kb on - strandat 1864.103 kb on - strandat 1864.103 kb on - strandat 1864.103 kb on - strandat 1864.103 kb on - strandat 1864.116 kb on + strandat 1864.116 kb on + strandat 1864.117 kb on - strandat 1864.117 kb on - strandat 1864.121 kb on + strandat 1864.121 kb on + strandat 1864.121 kb on + strandat 1864.121 kb on + strandat 1864.121 kb on + strandat 1864.121 kb on + strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.122 kb on - strandat 1864.348 kb on - strand, within OKGIIK_08515at 1864.348 kb on - strand, within OKGIIK_08515at 1864.348 kb on - strand, within OKGIIK_08515at 1864.348 kb on - strand, within OKGIIK_08515at 1864.356 kb on + strand, within OKGIIK_08515at 1864.506 kb on + strand, within OKGIIK_08515at 1864.506 kb on + strand, within OKGIIK_08515at 1864.506 kb on + strand, within OKGIIK_08515at 1864.507 kb on - strand, within OKGIIK_08515at 1864.507 kb on - strand, within OKGIIK_08515at 1864.710 kb on + strand, within OKGIIK_08515at 1864.710 kb on + strand, within OKGIIK_08515at 1864.710 kb on + strand, within OKGIIK_08515at 1864.710 kb on + strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.711 kb on - strand, within OKGIIK_08515at 1864.983 kb on + strandat 1864.983 kb on + strandat 1864.984 kb on - strandat 1864.984 kb on - strandat 1864.984 kb on - strandat 1864.984 kb on - strandat 1865.006 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.040 kb on + strandat 1865.041 kb on - strandat 1865.041 kb on - strandat 1865.221 kb on + strand, within OKGIIK_08520at 1865.221 kb on + strand, within OKGIIK_08520at 1865.221 kb on + strand, within OKGIIK_08520at 1865.221 kb on + strand, within OKGIIK_08520at 1865.221 kb on + strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.222 kb on - strand, within OKGIIK_08520at 1865.737 kb on - strand, within OKGIIK_08525at 1865.737 kb on - strand, within OKGIIK_08525at 1865.757 kb on - strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.949 kb on + strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.950 kb on - strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.982 kb on + strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1865.983 kb on - strand, within OKGIIK_08525at 1866.087 kb on + strand, within OKGIIK_08525at 1866.087 kb on + strand, within OKGIIK_08525at 1866.087 kb on + strand, within OKGIIK_08525at 1866.101 kb on + strand, within OKGIIK_08525at 1866.101 kb on + strand, within OKGIIK_08525at 1866.101 kb on + strand, within OKGIIK_08525at 1866.101 kb on + strand, within OKGIIK_08525at 1866.102 kb on - strand, within OKGIIK_08525at 1866.102 kb on - strand, within OKGIIK_08525at 1866.102 kb on - strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.105 kb on + strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525at 1866.106 kb on - strand, within OKGIIK_08525

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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1,864,102 + -1.0
1,864,102 + +0.0
1,864,102 + +0.3
1,864,102 + -2.0
1,864,102 + -2.0
1,864,102 + -0.8
1,864,103 - -2.3
1,864,103 - +2.0
1,864,103 - -0.9
1,864,103 - -2.1
1,864,103 - -0.2
1,864,116 + +0.6
1,864,116 + -0.8
1,864,117 - -1.1
1,864,117 - +1.6
1,864,121 + -1.3
1,864,121 + -1.6
1,864,121 + -1.0
1,864,121 + -2.1
1,864,121 + +0.3
1,864,121 + -1.1
1,864,122 - -1.2
1,864,122 - +2.8
1,864,122 - +1.0
1,864,122 - -1.3
1,864,122 - -0.2
1,864,122 - -1.8
1,864,122 - +1.0
1,864,122 - +0.6
1,864,122 - -2.0
1,864,348 - OKGIIK_08515 0.23 -0.7
1,864,348 - OKGIIK_08515 0.23 +0.8
1,864,348 - OKGIIK_08515 0.23 -1.7
1,864,348 - OKGIIK_08515 0.23 -1.0
1,864,356 + OKGIIK_08515 0.24 +0.2
1,864,506 + OKGIIK_08515 0.43 +0.0
1,864,506 + OKGIIK_08515 0.43 +0.0
1,864,506 + OKGIIK_08515 0.43 +1.2
1,864,507 - OKGIIK_08515 0.43 +0.1
1,864,507 - OKGIIK_08515 0.43 +0.2
1,864,710 + OKGIIK_08515 0.70 +0.7
1,864,710 + OKGIIK_08515 0.70 -0.1
1,864,710 + OKGIIK_08515 0.70 -0.3
1,864,710 + OKGIIK_08515 0.70 +0.4
1,864,711 - OKGIIK_08515 0.70 -0.5
1,864,711 - OKGIIK_08515 0.70 -0.5
1,864,711 - OKGIIK_08515 0.70 +0.5
1,864,711 - OKGIIK_08515 0.70 +0.2
1,864,711 - OKGIIK_08515 0.70 -0.5
1,864,711 - OKGIIK_08515 0.70 -1.8
1,864,711 - OKGIIK_08515 0.70 +0.9
1,864,711 - OKGIIK_08515 0.70 +0.0
1,864,983 + +0.0
1,864,983 + -0.0
1,864,984 - +0.0
1,864,984 - -1.3
1,864,984 - +0.0
1,864,984 - +0.0
1,865,006 + +1.5
1,865,040 + +0.3
1,865,040 + +0.7
1,865,040 + +0.6
1,865,040 + +1.3
1,865,040 + -1.6
1,865,040 + -0.5
1,865,040 + -0.5
1,865,040 + +0.0
1,865,041 - +0.0
1,865,041 - +0.5
1,865,221 + OKGIIK_08520 0.35 +0.9
1,865,221 + OKGIIK_08520 0.35 +0.8
1,865,221 + OKGIIK_08520 0.35 +0.4
1,865,221 + OKGIIK_08520 0.35 -0.6
1,865,221 + OKGIIK_08520 0.35 +2.9
1,865,222 - OKGIIK_08520 0.35 +2.6
1,865,222 - OKGIIK_08520 0.35 -0.4
1,865,222 - OKGIIK_08520 0.35 +1.0
1,865,222 - OKGIIK_08520 0.35 -1.0
1,865,222 - OKGIIK_08520 0.35 -1.3
1,865,222 - OKGIIK_08520 0.35 -2.4
1,865,222 - OKGIIK_08520 0.35 +1.3
1,865,222 - OKGIIK_08520 0.35 +1.0
1,865,222 - OKGIIK_08520 0.35 -1.8
1,865,737 - OKGIIK_08525 0.13 +0.5
1,865,737 - OKGIIK_08525 0.13 -0.2
1,865,757 - OKGIIK_08525 0.15 -1.3
1,865,949 + OKGIIK_08525 0.27 +0.0
1,865,949 + OKGIIK_08525 0.27 -0.3
1,865,949 + OKGIIK_08525 0.27 -1.4
1,865,949 + OKGIIK_08525 0.27 +1.0
1,865,949 + OKGIIK_08525 0.27 +0.7
1,865,949 + OKGIIK_08525 0.27 -1.5
1,865,949 + OKGIIK_08525 0.27 -0.2
1,865,949 + OKGIIK_08525 0.27 +0.0
1,865,949 + OKGIIK_08525 0.27 +0.7
1,865,949 + OKGIIK_08525 0.27 -1.1
1,865,949 + OKGIIK_08525 0.27 -2.0
1,865,949 + OKGIIK_08525 0.27 +0.4
1,865,949 + OKGIIK_08525 0.27 +0.2
1,865,949 + OKGIIK_08525 0.27 +0.0
1,865,949 + OKGIIK_08525 0.27 +0.0
1,865,949 + OKGIIK_08525 0.27 -0.4
1,865,950 - OKGIIK_08525 0.27 -2.0
1,865,950 - OKGIIK_08525 0.27 +2.4
1,865,950 - OKGIIK_08525 0.27 -0.8
1,865,950 - OKGIIK_08525 0.27 +1.3
1,865,950 - OKGIIK_08525 0.27 -0.8
1,865,950 - OKGIIK_08525 0.27 -2.3
1,865,950 - OKGIIK_08525 0.27 +0.0
1,865,982 + OKGIIK_08525 0.30 +0.2
1,865,982 + OKGIIK_08525 0.30 -0.8
1,865,982 + OKGIIK_08525 0.30 +0.5
1,865,982 + OKGIIK_08525 0.30 -0.7
1,865,982 + OKGIIK_08525 0.30 +0.8
1,865,982 + OKGIIK_08525 0.30 +0.0
1,865,982 + OKGIIK_08525 0.30 +0.9
1,865,982 + OKGIIK_08525 0.30 -0.3
1,865,983 - OKGIIK_08525 0.30 +1.0
1,865,983 - OKGIIK_08525 0.30 +0.6
1,865,983 - OKGIIK_08525 0.30 -0.2
1,865,983 - OKGIIK_08525 0.30 +2.0
1,865,983 - OKGIIK_08525 0.30 -1.0
1,865,983 - OKGIIK_08525 0.30 -1.0
1,865,983 - OKGIIK_08525 0.30 -1.5
1,865,983 - OKGIIK_08525 0.30 +0.2
1,865,983 - OKGIIK_08525 0.30 -1.1
1,866,087 + OKGIIK_08525 0.37 +0.7
1,866,087 + OKGIIK_08525 0.37 +0.5
1,866,087 + OKGIIK_08525 0.37 +1.5
1,866,101 + OKGIIK_08525 0.38 -0.5
1,866,101 + OKGIIK_08525 0.38 -0.4
1,866,101 + OKGIIK_08525 0.38 -2.0
1,866,101 + OKGIIK_08525 0.38 +1.6
1,866,102 - OKGIIK_08525 0.38 -0.8
1,866,102 - OKGIIK_08525 0.38 +0.6
1,866,102 - OKGIIK_08525 0.38 +0.0
1,866,105 + OKGIIK_08525 0.38 +0.9
1,866,105 + OKGIIK_08525 0.38 +0.0
1,866,105 + OKGIIK_08525 0.38 +1.5
1,866,105 + OKGIIK_08525 0.38 +0.8
1,866,105 + OKGIIK_08525 0.38 -0.4
1,866,105 + OKGIIK_08525 0.38 +0.5
1,866,105 + OKGIIK_08525 0.38 +0.0
1,866,105 + OKGIIK_08525 0.38 +0.8
1,866,105 + OKGIIK_08525 0.38 +0.0
1,866,105 + OKGIIK_08525 0.38 +0.2
1,866,105 + OKGIIK_08525 0.38 -1.8
1,866,105 + OKGIIK_08525 0.38 -1.1
1,866,105 + OKGIIK_08525 0.38 -0.4
1,866,105 + OKGIIK_08525 0.38 -1.2
1,866,105 + OKGIIK_08525 0.38 -0.4
1,866,106 - OKGIIK_08525 0.38 +0.3
1,866,106 - OKGIIK_08525 0.38 +0.7
1,866,106 - OKGIIK_08525 0.38 -2.7
1,866,106 - OKGIIK_08525 0.38 +0.0
1,866,106 - OKGIIK_08525 0.38 +0.3
1,866,106 - OKGIIK_08525 0.38 +0.3
1,866,106 - OKGIIK_08525 0.38 -1.5
1,866,106 - OKGIIK_08525 0.38 +1.2
1,866,106 - OKGIIK_08525 0.38 +0.3
1,866,106 - OKGIIK_08525 0.38 +1.0
1,866,106 - OKGIIK_08525 0.38 +0.0
1,866,106 - OKGIIK_08525 0.38 +0.6
1,866,106 - OKGIIK_08525 0.38 +1.4
1,866,106 - OKGIIK_08525 0.38 +0.0
1,866,106 - OKGIIK_08525 0.38 +0.7

Or see this region's nucleotide sequence