Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07305

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_07300 and OKGIIK_07305 are separated by 213 nucleotidesOKGIIK_07305 and OKGIIK_07310 are separated by 43 nucleotides OKGIIK_07300: OKGIIK_07300 - carbamoyl phosphate synthase small subunit, at 1,615,762 to 1,616,889 _07300 OKGIIK_07305: OKGIIK_07305 - 2OG-FeII-Oxy-4 domain-containing protein, at 1,617,103 to 1,617,798 _07305 OKGIIK_07310: OKGIIK_07310 - Sodium/calcium exchanger protein, at 1,617,842 to 1,618,846 _07310 Position (kb) 1617 1618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1616.151 kb on - strand, within OKGIIK_07300at 1616.366 kb on + strand, within OKGIIK_07300at 1616.747 kb on + strand, within OKGIIK_07300at 1616.890 kb on - strandat 1616.890 kb on - strandat 1616.890 kb on - strandat 1616.890 kb on - strandat 1616.986 kb on + strandat 1616.986 kb on + strandat 1616.986 kb on + strandat 1616.986 kb on + strandat 1616.987 kb on - strandat 1616.987 kb on - strandat 1616.987 kb on - strandat 1616.987 kb on - strandat 1616.987 kb on - strandat 1616.987 kb on - strandat 1617.067 kb on + strandat 1617.067 kb on + strandat 1617.068 kb on - strandat 1617.068 kb on - strandat 1617.068 kb on - strandat 1617.068 kb on - strandat 1617.072 kb on + strandat 1617.072 kb on + strandat 1617.072 kb on + strandat 1617.072 kb on + strandat 1617.072 kb on + strandat 1617.072 kb on + strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.073 kb on - strandat 1617.244 kb on + strand, within OKGIIK_07305at 1617.245 kb on - strand, within OKGIIK_07305at 1617.245 kb on - strand, within OKGIIK_07305at 1617.245 kb on - strand, within OKGIIK_07305at 1617.245 kb on - strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.246 kb on + strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.247 kb on - strand, within OKGIIK_07305at 1617.269 kb on - strand, within OKGIIK_07305at 1617.435 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.472 kb on + strand, within OKGIIK_07305at 1617.473 kb on - strand, within OKGIIK_07305at 1617.473 kb on - strand, within OKGIIK_07305at 1617.473 kb on - strand, within OKGIIK_07305at 1617.473 kb on - strand, within OKGIIK_07305at 1617.473 kb on - strand, within OKGIIK_07305at 1617.574 kb on + strand, within OKGIIK_07305at 1617.574 kb on + strand, within OKGIIK_07305at 1617.574 kb on + strand, within OKGIIK_07305at 1617.574 kb on + strand, within OKGIIK_07305at 1617.575 kb on - strand, within OKGIIK_07305at 1617.575 kb on - strand, within OKGIIK_07305at 1617.575 kb on - strand, within OKGIIK_07305at 1617.575 kb on - strand, within OKGIIK_07305at 1617.631 kb on + strand, within OKGIIK_07305at 1617.885 kb on + strandat 1617.885 kb on + strandat 1617.885 kb on + strandat 1617.885 kb on + strandat 1617.885 kb on + strandat 1617.885 kb on + strandat 1617.951 kb on + strand, within OKGIIK_07310at 1617.951 kb on + strand, within OKGIIK_07310at 1617.951 kb on + strand, within OKGIIK_07310at 1617.952 kb on - strand, within OKGIIK_07310at 1617.976 kb on + strand, within OKGIIK_07310at 1617.976 kb on + strand, within OKGIIK_07310at 1617.976 kb on + strand, within OKGIIK_07310at 1617.977 kb on - strand, within OKGIIK_07310at 1618.016 kb on - strand, within OKGIIK_07310at 1618.277 kb on + strand, within OKGIIK_07310at 1618.277 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.380 kb on + strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.381 kb on - strand, within OKGIIK_07310at 1618.389 kb on + strand, within OKGIIK_07310at 1618.389 kb on + strand, within OKGIIK_07310at 1618.389 kb on + strand, within OKGIIK_07310at 1618.390 kb on - strand, within OKGIIK_07310at 1618.390 kb on - strand, within OKGIIK_07310at 1618.406 kb on + strand, within OKGIIK_07310at 1618.406 kb on + strand, within OKGIIK_07310at 1618.406 kb on + strand, within OKGIIK_07310at 1618.406 kb on + strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.407 kb on - strand, within OKGIIK_07310at 1618.531 kb on + strand, within OKGIIK_07310at 1618.531 kb on + strand, within OKGIIK_07310at 1618.531 kb on + strand, within OKGIIK_07310at 1618.532 kb on - strand, within OKGIIK_07310at 1618.532 kb on - strand, within OKGIIK_07310at 1618.532 kb on - strand, within OKGIIK_07310at 1618.532 kb on - strand, within OKGIIK_07310at 1618.532 kb on - strand, within OKGIIK_07310at 1618.581 kb on + strand, within OKGIIK_07310at 1618.582 kb on - strand, within OKGIIK_07310at 1618.785 kb on + strandat 1618.785 kb on + strandat 1618.785 kb on + strandat 1618.785 kb on + strandat 1618.785 kb on + strandat 1618.786 kb on - strandat 1618.786 kb on - strandat 1618.786 kb on - strandat 1618.786 kb on - strandat 1618.786 kb on - strandat 1618.786 kb on - strandat 1618.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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1,616,151 - OKGIIK_07300 0.34 +0.7
1,616,366 + OKGIIK_07300 0.54 -0.6
1,616,747 + OKGIIK_07300 0.87 -0.8
1,616,890 - +1.1
1,616,890 - +0.3
1,616,890 - -1.1
1,616,890 - +0.1
1,616,986 + -1.2
1,616,986 + -0.0
1,616,986 + +0.2
1,616,986 + +1.1
1,616,987 - +1.3
1,616,987 - -1.5
1,616,987 - -1.5
1,616,987 - -0.4
1,616,987 - -1.9
1,616,987 - +0.9
1,617,067 + +0.5
1,617,067 + +1.9
1,617,068 - -0.9
1,617,068 - -0.3
1,617,068 - +0.5
1,617,068 - -0.0
1,617,072 + -0.3
1,617,072 + -0.3
1,617,072 + -1.0
1,617,072 + -0.7
1,617,072 + -0.7
1,617,072 + +0.3
1,617,073 - -0.1
1,617,073 - +0.0
1,617,073 - -0.3
1,617,073 - +0.1
1,617,073 - -0.5
1,617,073 - -0.2
1,617,073 - -1.5
1,617,073 - -1.5
1,617,073 - -0.0
1,617,073 - -1.7
1,617,073 - +1.1
1,617,244 + OKGIIK_07305 0.20 -0.7
1,617,245 - OKGIIK_07305 0.20 -0.4
1,617,245 - OKGIIK_07305 0.20 +1.3
1,617,245 - OKGIIK_07305 0.20 +0.5
1,617,245 - OKGIIK_07305 0.20 -0.9
1,617,246 + OKGIIK_07305 0.21 +0.6
1,617,246 + OKGIIK_07305 0.21 -1.3
1,617,246 + OKGIIK_07305 0.21 -0.8
1,617,246 + OKGIIK_07305 0.21 -1.7
1,617,246 + OKGIIK_07305 0.21 -0.8
1,617,246 + OKGIIK_07305 0.21 -0.7
1,617,246 + OKGIIK_07305 0.21 -0.2
1,617,246 + OKGIIK_07305 0.21 -0.7
1,617,246 + OKGIIK_07305 0.21 +0.6
1,617,246 + OKGIIK_07305 0.21 -1.5
1,617,246 + OKGIIK_07305 0.21 -0.8
1,617,247 - OKGIIK_07305 0.21 -0.2
1,617,247 - OKGIIK_07305 0.21 -4.0
1,617,247 - OKGIIK_07305 0.21 -0.8
1,617,247 - OKGIIK_07305 0.21 +1.1
1,617,247 - OKGIIK_07305 0.21 -1.2
1,617,247 - OKGIIK_07305 0.21 -0.2
1,617,247 - OKGIIK_07305 0.21 -1.9
1,617,247 - OKGIIK_07305 0.21 +0.3
1,617,247 - OKGIIK_07305 0.21 +1.8
1,617,247 - OKGIIK_07305 0.21 -0.4
1,617,247 - OKGIIK_07305 0.21 +0.2
1,617,247 - OKGIIK_07305 0.21 -1.4
1,617,247 - OKGIIK_07305 0.21 +1.0
1,617,247 - OKGIIK_07305 0.21 -0.5
1,617,247 - OKGIIK_07305 0.21 +1.2
1,617,269 - OKGIIK_07305 0.24 -1.2
1,617,435 + OKGIIK_07305 0.48 -0.8
1,617,472 + OKGIIK_07305 0.53 +0.2
1,617,472 + OKGIIK_07305 0.53 -1.5
1,617,472 + OKGIIK_07305 0.53 -0.8
1,617,472 + OKGIIK_07305 0.53 -0.2
1,617,472 + OKGIIK_07305 0.53 -0.6
1,617,472 + OKGIIK_07305 0.53 -1.2
1,617,472 + OKGIIK_07305 0.53 -1.0
1,617,472 + OKGIIK_07305 0.53 +0.7
1,617,473 - OKGIIK_07305 0.53 +0.4
1,617,473 - OKGIIK_07305 0.53 +0.0
1,617,473 - OKGIIK_07305 0.53 +0.3
1,617,473 - OKGIIK_07305 0.53 -0.5
1,617,473 - OKGIIK_07305 0.53 +0.1
1,617,574 + OKGIIK_07305 0.68 -1.4
1,617,574 + OKGIIK_07305 0.68 +0.6
1,617,574 + OKGIIK_07305 0.68 -1.7
1,617,574 + OKGIIK_07305 0.68 -2.1
1,617,575 - OKGIIK_07305 0.68 -1.5
1,617,575 - OKGIIK_07305 0.68 -0.1
1,617,575 - OKGIIK_07305 0.68 -1.1
1,617,575 - OKGIIK_07305 0.68 -1.5
1,617,631 + OKGIIK_07305 0.76 -1.7
1,617,885 + -0.9
1,617,885 + -0.3
1,617,885 + +0.3
1,617,885 + +0.2
1,617,885 + -0.3
1,617,885 + +0.1
1,617,951 + OKGIIK_07310 0.11 -0.3
1,617,951 + OKGIIK_07310 0.11 +0.4
1,617,951 + OKGIIK_07310 0.11 -1.7
1,617,952 - OKGIIK_07310 0.11 -0.4
1,617,976 + OKGIIK_07310 0.13 +1.5
1,617,976 + OKGIIK_07310 0.13 -1.2
1,617,976 + OKGIIK_07310 0.13 +0.1
1,617,977 - OKGIIK_07310 0.13 -0.6
1,618,016 - OKGIIK_07310 0.17 -1.3
1,618,277 + OKGIIK_07310 0.43 -0.2
1,618,277 + OKGIIK_07310 0.43 -1.7
1,618,380 + OKGIIK_07310 0.54 -0.2
1,618,380 + OKGIIK_07310 0.54 -1.5
1,618,380 + OKGIIK_07310 0.54 -1.2
1,618,380 + OKGIIK_07310 0.54 -0.2
1,618,380 + OKGIIK_07310 0.54 +0.5
1,618,380 + OKGIIK_07310 0.54 -1.5
1,618,380 + OKGIIK_07310 0.54 -0.5
1,618,380 + OKGIIK_07310 0.54 +0.6
1,618,380 + OKGIIK_07310 0.54 +0.2
1,618,380 + OKGIIK_07310 0.54 -0.0
1,618,380 + OKGIIK_07310 0.54 +1.5
1,618,380 + OKGIIK_07310 0.54 +0.9
1,618,380 + OKGIIK_07310 0.54 +0.6
1,618,380 + OKGIIK_07310 0.54 -2.2
1,618,380 + OKGIIK_07310 0.54 -0.5
1,618,380 + OKGIIK_07310 0.54 -0.2
1,618,380 + OKGIIK_07310 0.54 -0.6
1,618,380 + OKGIIK_07310 0.54 -2.7
1,618,380 + OKGIIK_07310 0.54 +0.1
1,618,380 + OKGIIK_07310 0.54 -0.0
1,618,381 - OKGIIK_07310 0.54 +1.1
1,618,381 - OKGIIK_07310 0.54 -1.0
1,618,381 - OKGIIK_07310 0.54 -0.3
1,618,381 - OKGIIK_07310 0.54 -1.9
1,618,381 - OKGIIK_07310 0.54 +0.1
1,618,381 - OKGIIK_07310 0.54 +0.6
1,618,381 - OKGIIK_07310 0.54 +0.9
1,618,381 - OKGIIK_07310 0.54 +0.5
1,618,381 - OKGIIK_07310 0.54 +1.1
1,618,381 - OKGIIK_07310 0.54 -1.1
1,618,381 - OKGIIK_07310 0.54 -0.3
1,618,381 - OKGIIK_07310 0.54 -0.4
1,618,381 - OKGIIK_07310 0.54 -0.2
1,618,381 - OKGIIK_07310 0.54 -0.8
1,618,381 - OKGIIK_07310 0.54 +1.1
1,618,389 + OKGIIK_07310 0.54 -0.8
1,618,389 + OKGIIK_07310 0.54 -0.5
1,618,389 + OKGIIK_07310 0.54 +1.3
1,618,390 - OKGIIK_07310 0.55 +0.1
1,618,390 - OKGIIK_07310 0.55 -1.2
1,618,406 + OKGIIK_07310 0.56 -0.7
1,618,406 + OKGIIK_07310 0.56 +0.2
1,618,406 + OKGIIK_07310 0.56 -0.7
1,618,406 + OKGIIK_07310 0.56 +0.8
1,618,407 - OKGIIK_07310 0.56 -1.0
1,618,407 - OKGIIK_07310 0.56 +0.1
1,618,407 - OKGIIK_07310 0.56 -0.0
1,618,407 - OKGIIK_07310 0.56 +0.9
1,618,407 - OKGIIK_07310 0.56 +0.0
1,618,407 - OKGIIK_07310 0.56 -1.7
1,618,407 - OKGIIK_07310 0.56 -0.8
1,618,407 - OKGIIK_07310 0.56 +0.5
1,618,407 - OKGIIK_07310 0.56 -0.8
1,618,407 - OKGIIK_07310 0.56 +0.1
1,618,407 - OKGIIK_07310 0.56 -0.9
1,618,407 - OKGIIK_07310 0.56 +0.8
1,618,531 + OKGIIK_07310 0.69 -1.9
1,618,531 + OKGIIK_07310 0.69 -0.2
1,618,531 + OKGIIK_07310 0.69 +0.7
1,618,532 - OKGIIK_07310 0.69 -0.2
1,618,532 - OKGIIK_07310 0.69 -0.0
1,618,532 - OKGIIK_07310 0.69 -1.5
1,618,532 - OKGIIK_07310 0.69 +0.8
1,618,532 - OKGIIK_07310 0.69 +0.4
1,618,581 + OKGIIK_07310 0.74 -1.5
1,618,582 - OKGIIK_07310 0.74 +0.6
1,618,785 + -0.4
1,618,785 + -1.2
1,618,785 + +0.5
1,618,785 + -1.4
1,618,785 + +0.4
1,618,786 - -1.7
1,618,786 - -0.7
1,618,786 - -0.4
1,618,786 - -0.9
1,618,786 - -0.3
1,618,786 - +0.2
1,618,786 - -0.3

Or see this region's nucleotide sequence