Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvP2 and OKGIIK_06745 are separated by 358 nucleotides OKGIIK_06745 and Leu_trna are separated by 184 nucleotides Leu_trna and rnr are separated by 132 nucleotides
OKGIIK_06740: gcvP2 - Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain, at 1,499,886 to 1,502,801
gcvP2
OKGIIK_06745: OKGIIK_06745 - VOC family virulence protein, at 1,503,160 to 1,503,567
_06745
OKGIIK_06750: Leu_trna - tRNA-Leu, at 1,503,752 to 1,503,838
_trna
OKGIIK_06755: rnr - ribonuclease R, at 1,503,971 to 1,506,604
rnr
Position (kb)
1503
1504 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1502.950 kb on + strand at 1502.951 kb on - strand at 1502.951 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.051 kb on - strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.052 kb on + strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.053 kb on - strand at 1503.122 kb on + strand at 1503.123 kb on - strand at 1503.123 kb on - strand at 1503.169 kb on - strand at 1503.169 kb on - strand at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.229 kb on + strand, within OKGIIK_06745 at 1503.239 kb on + strand, within OKGIIK_06745 at 1503.239 kb on + strand, within OKGIIK_06745 at 1503.240 kb on - strand, within OKGIIK_06745 at 1503.240 kb on - strand, within OKGIIK_06745 at 1503.240 kb on - strand, within OKGIIK_06745 at 1503.240 kb on - strand, within OKGIIK_06745 at 1503.240 kb on - strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.284 kb on + strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.285 kb on - strand, within OKGIIK_06745 at 1503.412 kb on + strand, within OKGIIK_06745 at 1503.412 kb on + strand, within OKGIIK_06745 at 1503.412 kb on + strand, within OKGIIK_06745 at 1503.412 kb on + strand, within OKGIIK_06745 at 1503.412 kb on + strand, within OKGIIK_06745 at 1503.413 kb on - strand, within OKGIIK_06745 at 1503.413 kb on - strand, within OKGIIK_06745 at 1503.413 kb on - strand, within OKGIIK_06745 at 1503.413 kb on - strand, within OKGIIK_06745 at 1503.413 kb on - strand, within OKGIIK_06745 at 1503.413 kb on - strand, within OKGIIK_06745 at 1503.511 kb on + strand, within OKGIIK_06745 at 1503.511 kb on + strand, within OKGIIK_06745 at 1503.511 kb on + strand, within OKGIIK_06745 at 1503.511 kb on + strand, within OKGIIK_06745 at 1503.511 kb on + strand, within OKGIIK_06745 at 1503.511 kb on + strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.512 kb on - strand, within OKGIIK_06745 at 1503.514 kb on - strand, within OKGIIK_06745 at 1503.517 kb on + strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.518 kb on - strand, within OKGIIK_06745 at 1503.609 kb on + strand at 1503.610 kb on - strand at 1504.418 kb on + strand, within rnr at 1504.418 kb on + strand, within rnr at 1504.418 kb on + strand, within rnr at 1504.418 kb on + strand, within rnr at 1504.418 kb on + strand, within rnr at 1504.418 kb on + strand, within rnr at 1504.419 kb on - strand, within rnr at 1504.419 kb on - strand, within rnr at 1504.419 kb on - strand, within rnr at 1504.419 kb on - strand, within rnr at 1504.419 kb on - strand, within rnr at 1504.419 kb on - strand, within rnr
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 1,502,950 + -0.7 1,502,951 - -1.7 1,502,951 - +0.2 1,503,051 - +0.1 1,503,051 - -0.5 1,503,051 - +1.1 1,503,051 - +0.1 1,503,051 - +0.4 1,503,051 - -0.9 1,503,051 - -0.1 1,503,051 - +0.5 1,503,052 + -2.4 1,503,052 + +1.3 1,503,052 + -0.4 1,503,052 + -0.2 1,503,052 + -1.1 1,503,052 + -0.9 1,503,052 + +0.3 1,503,052 + -0.9 1,503,052 + -1.5 1,503,052 + -0.3 1,503,052 + -0.2 1,503,052 + -0.1 1,503,052 + +1.9 1,503,052 + +0.5 1,503,052 + -0.9 1,503,052 + -0.6 1,503,052 + +0.3 1,503,053 - -0.9 1,503,053 - +0.1 1,503,053 - -0.3 1,503,053 - -0.5 1,503,053 - +0.1 1,503,053 - +0.2 1,503,053 - -0.1 1,503,053 - -0.0 1,503,053 - +0.1 1,503,053 - -0.2 1,503,122 + -0.4 1,503,123 - -0.3 1,503,123 - +0.6 1,503,169 - +0.3 1,503,169 - +1.1 1,503,229 + OKGIIK_06745 0.17 +0.2 1,503,229 + OKGIIK_06745 0.17 +0.3 1,503,229 + OKGIIK_06745 0.17 +0.1 1,503,229 + OKGIIK_06745 0.17 +1.8 1,503,229 + OKGIIK_06745 0.17 +0.5 1,503,229 + OKGIIK_06745 0.17 -0.2 1,503,229 + OKGIIK_06745 0.17 -0.3 1,503,239 + OKGIIK_06745 0.19 +0.6 1,503,239 + OKGIIK_06745 0.19 +0.5 1,503,240 - OKGIIK_06745 0.20 -1.5 1,503,240 - OKGIIK_06745 0.20 -1.9 1,503,240 - OKGIIK_06745 0.20 +1.1 1,503,240 - OKGIIK_06745 0.20 -0.9 1,503,240 - OKGIIK_06745 0.20 +1.1 1,503,284 + OKGIIK_06745 0.30 -1.5 1,503,284 + OKGIIK_06745 0.30 +0.2 1,503,284 + OKGIIK_06745 0.30 -2.6 1,503,284 + OKGIIK_06745 0.30 -0.1 1,503,284 + OKGIIK_06745 0.30 -0.5 1,503,284 + OKGIIK_06745 0.30 -0.4 1,503,284 + OKGIIK_06745 0.30 +0.5 1,503,284 + OKGIIK_06745 0.30 -0.6 1,503,285 - OKGIIK_06745 0.31 -0.8 1,503,285 - OKGIIK_06745 0.31 +0.1 1,503,285 - OKGIIK_06745 0.31 -1.2 1,503,285 - OKGIIK_06745 0.31 -1.7 1,503,285 - OKGIIK_06745 0.31 +0.8 1,503,285 - OKGIIK_06745 0.31 +0.4 1,503,285 - OKGIIK_06745 0.31 -0.3 1,503,285 - OKGIIK_06745 0.31 +0.7 1,503,285 - OKGIIK_06745 0.31 +0.2 1,503,412 + OKGIIK_06745 0.62 -0.1 1,503,412 + OKGIIK_06745 0.62 -2.0 1,503,412 + OKGIIK_06745 0.62 -0.7 1,503,412 + OKGIIK_06745 0.62 +1.1 1,503,412 + OKGIIK_06745 0.62 +0.4 1,503,413 - OKGIIK_06745 0.62 -1.7 1,503,413 - OKGIIK_06745 0.62 +0.1 1,503,413 - OKGIIK_06745 0.62 -1.5 1,503,413 - OKGIIK_06745 0.62 -0.5 1,503,413 - OKGIIK_06745 0.62 -2.2 1,503,413 - OKGIIK_06745 0.62 +0.1 1,503,511 + OKGIIK_06745 0.86 +0.7 1,503,511 + OKGIIK_06745 0.86 +1.4 1,503,511 + OKGIIK_06745 0.86 -1.0 1,503,511 + OKGIIK_06745 0.86 +1.8 1,503,511 + OKGIIK_06745 0.86 +1.5 1,503,511 + OKGIIK_06745 0.86 -0.2 1,503,512 - OKGIIK_06745 0.86 -0.8 1,503,512 - OKGIIK_06745 0.86 -0.3 1,503,512 - OKGIIK_06745 0.86 +1.2 1,503,512 - OKGIIK_06745 0.86 -0.5 1,503,512 - OKGIIK_06745 0.86 -0.2 1,503,512 - OKGIIK_06745 0.86 -0.8 1,503,512 - OKGIIK_06745 0.86 +2.2 1,503,512 - OKGIIK_06745 0.86 -1.5 1,503,512 - OKGIIK_06745 0.86 +0.3 1,503,512 - OKGIIK_06745 0.86 +0.3 1,503,512 - OKGIIK_06745 0.86 -0.1 1,503,514 - OKGIIK_06745 0.87 +0.3 1,503,517 + OKGIIK_06745 0.88 +0.3 1,503,518 - OKGIIK_06745 0.88 -1.6 1,503,518 - OKGIIK_06745 0.88 +0.1 1,503,518 - OKGIIK_06745 0.88 -1.8 1,503,518 - OKGIIK_06745 0.88 -0.6 1,503,518 - OKGIIK_06745 0.88 -0.5 1,503,518 - OKGIIK_06745 0.88 +1.4 1,503,518 - OKGIIK_06745 0.88 -1.1 1,503,609 + +0.2 1,503,610 - +0.9 1,504,418 + rnr OKGIIK_06755 0.17 -0.2 1,504,418 + rnr OKGIIK_06755 0.17 -0.0 1,504,418 + rnr OKGIIK_06755 0.17 -0.8 1,504,418 + rnr OKGIIK_06755 0.17 +0.3 1,504,418 + rnr OKGIIK_06755 0.17 -0.0 1,504,418 + rnr OKGIIK_06755 0.17 -0.5 1,504,419 - rnr OKGIIK_06755 0.17 -2.1 1,504,419 - rnr OKGIIK_06755 0.17 -0.5 1,504,419 - rnr OKGIIK_06755 0.17 +0.3 1,504,419 - rnr OKGIIK_06755 0.17 -0.1 1,504,419 - rnr OKGIIK_06755 0.17 -0.4 1,504,419 - rnr OKGIIK_06755 0.17 -0.1
Or see this region's nucleotide sequence