Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06750

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcvP2 and OKGIIK_06745 are separated by 358 nucleotidesOKGIIK_06745 and Leu_trna are separated by 184 nucleotidesLeu_trna and rnr are separated by 132 nucleotides OKGIIK_06740: gcvP2 - Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain, at 1,499,886 to 1,502,801 gcvP2 OKGIIK_06745: OKGIIK_06745 - VOC family virulence protein, at 1,503,160 to 1,503,567 _06745 OKGIIK_06750: Leu_trna - tRNA-Leu, at 1,503,752 to 1,503,838 _trna OKGIIK_06755: rnr - ribonuclease R, at 1,503,971 to 1,506,604 rnr Position (kb) 1503 1504Strain fitness (log2 ratio) -2 -1 0 1 2at 1502.950 kb on + strandat 1502.951 kb on - strandat 1502.951 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.051 kb on - strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.052 kb on + strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.053 kb on - strandat 1503.122 kb on + strandat 1503.123 kb on - strandat 1503.123 kb on - strandat 1503.169 kb on - strandat 1503.169 kb on - strandat 1503.229 kb on + strand, within OKGIIK_06745at 1503.229 kb on + strand, within OKGIIK_06745at 1503.229 kb on + strand, within OKGIIK_06745at 1503.229 kb on + strand, within OKGIIK_06745at 1503.229 kb on + strand, within OKGIIK_06745at 1503.229 kb on + strand, within OKGIIK_06745at 1503.229 kb on + strand, within OKGIIK_06745at 1503.239 kb on + strand, within OKGIIK_06745at 1503.239 kb on + strand, within OKGIIK_06745at 1503.240 kb on - strand, within OKGIIK_06745at 1503.240 kb on - strand, within OKGIIK_06745at 1503.240 kb on - strand, within OKGIIK_06745at 1503.240 kb on - strand, within OKGIIK_06745at 1503.240 kb on - strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.284 kb on + strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.285 kb on - strand, within OKGIIK_06745at 1503.412 kb on + strand, within OKGIIK_06745at 1503.412 kb on + strand, within OKGIIK_06745at 1503.412 kb on + strand, within OKGIIK_06745at 1503.412 kb on + strand, within OKGIIK_06745at 1503.412 kb on + strand, within OKGIIK_06745at 1503.413 kb on - strand, within OKGIIK_06745at 1503.413 kb on - strand, within OKGIIK_06745at 1503.413 kb on - strand, within OKGIIK_06745at 1503.413 kb on - strand, within OKGIIK_06745at 1503.413 kb on - strand, within OKGIIK_06745at 1503.413 kb on - strand, within OKGIIK_06745at 1503.511 kb on + strand, within OKGIIK_06745at 1503.511 kb on + strand, within OKGIIK_06745at 1503.511 kb on + strand, within OKGIIK_06745at 1503.511 kb on + strand, within OKGIIK_06745at 1503.511 kb on + strand, within OKGIIK_06745at 1503.511 kb on + strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.512 kb on - strand, within OKGIIK_06745at 1503.514 kb on - strand, within OKGIIK_06745at 1503.517 kb on + strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.518 kb on - strand, within OKGIIK_06745at 1503.609 kb on + strandat 1503.610 kb on - strandat 1504.418 kb on + strand, within rnrat 1504.418 kb on + strand, within rnrat 1504.418 kb on + strand, within rnrat 1504.418 kb on + strand, within rnrat 1504.418 kb on + strand, within rnrat 1504.418 kb on + strand, within rnrat 1504.419 kb on - strand, within rnrat 1504.419 kb on - strand, within rnrat 1504.419 kb on - strand, within rnrat 1504.419 kb on - strand, within rnrat 1504.419 kb on - strand, within rnrat 1504.419 kb on - strand, within rnr

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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1,502,950 + -0.7
1,502,951 - -1.7
1,502,951 - +0.2
1,503,051 - +0.1
1,503,051 - -0.5
1,503,051 - +1.1
1,503,051 - +0.1
1,503,051 - +0.4
1,503,051 - -0.9
1,503,051 - -0.1
1,503,051 - +0.5
1,503,052 + -2.4
1,503,052 + +1.3
1,503,052 + -0.4
1,503,052 + -0.2
1,503,052 + -1.1
1,503,052 + -0.9
1,503,052 + +0.3
1,503,052 + -0.9
1,503,052 + -1.5
1,503,052 + -0.3
1,503,052 + -0.2
1,503,052 + -0.1
1,503,052 + +1.9
1,503,052 + +0.5
1,503,052 + -0.9
1,503,052 + -0.6
1,503,052 + +0.3
1,503,053 - -0.9
1,503,053 - +0.1
1,503,053 - -0.3
1,503,053 - -0.5
1,503,053 - +0.1
1,503,053 - +0.2
1,503,053 - -0.1
1,503,053 - -0.0
1,503,053 - +0.1
1,503,053 - -0.2
1,503,122 + -0.4
1,503,123 - -0.3
1,503,123 - +0.6
1,503,169 - +0.3
1,503,169 - +1.1
1,503,229 + OKGIIK_06745 0.17 +0.2
1,503,229 + OKGIIK_06745 0.17 +0.3
1,503,229 + OKGIIK_06745 0.17 +0.1
1,503,229 + OKGIIK_06745 0.17 +1.8
1,503,229 + OKGIIK_06745 0.17 +0.5
1,503,229 + OKGIIK_06745 0.17 -0.2
1,503,229 + OKGIIK_06745 0.17 -0.3
1,503,239 + OKGIIK_06745 0.19 +0.6
1,503,239 + OKGIIK_06745 0.19 +0.5
1,503,240 - OKGIIK_06745 0.20 -1.5
1,503,240 - OKGIIK_06745 0.20 -1.9
1,503,240 - OKGIIK_06745 0.20 +1.1
1,503,240 - OKGIIK_06745 0.20 -0.9
1,503,240 - OKGIIK_06745 0.20 +1.1
1,503,284 + OKGIIK_06745 0.30 -1.5
1,503,284 + OKGIIK_06745 0.30 +0.2
1,503,284 + OKGIIK_06745 0.30 -2.6
1,503,284 + OKGIIK_06745 0.30 -0.1
1,503,284 + OKGIIK_06745 0.30 -0.5
1,503,284 + OKGIIK_06745 0.30 -0.4
1,503,284 + OKGIIK_06745 0.30 +0.5
1,503,284 + OKGIIK_06745 0.30 -0.6
1,503,285 - OKGIIK_06745 0.31 -0.8
1,503,285 - OKGIIK_06745 0.31 +0.1
1,503,285 - OKGIIK_06745 0.31 -1.2
1,503,285 - OKGIIK_06745 0.31 -1.7
1,503,285 - OKGIIK_06745 0.31 +0.8
1,503,285 - OKGIIK_06745 0.31 +0.4
1,503,285 - OKGIIK_06745 0.31 -0.3
1,503,285 - OKGIIK_06745 0.31 +0.7
1,503,285 - OKGIIK_06745 0.31 +0.2
1,503,412 + OKGIIK_06745 0.62 -0.1
1,503,412 + OKGIIK_06745 0.62 -2.0
1,503,412 + OKGIIK_06745 0.62 -0.7
1,503,412 + OKGIIK_06745 0.62 +1.1
1,503,412 + OKGIIK_06745 0.62 +0.4
1,503,413 - OKGIIK_06745 0.62 -1.7
1,503,413 - OKGIIK_06745 0.62 +0.1
1,503,413 - OKGIIK_06745 0.62 -1.5
1,503,413 - OKGIIK_06745 0.62 -0.5
1,503,413 - OKGIIK_06745 0.62 -2.2
1,503,413 - OKGIIK_06745 0.62 +0.1
1,503,511 + OKGIIK_06745 0.86 +0.7
1,503,511 + OKGIIK_06745 0.86 +1.4
1,503,511 + OKGIIK_06745 0.86 -1.0
1,503,511 + OKGIIK_06745 0.86 +1.8
1,503,511 + OKGIIK_06745 0.86 +1.5
1,503,511 + OKGIIK_06745 0.86 -0.2
1,503,512 - OKGIIK_06745 0.86 -0.8
1,503,512 - OKGIIK_06745 0.86 -0.3
1,503,512 - OKGIIK_06745 0.86 +1.2
1,503,512 - OKGIIK_06745 0.86 -0.5
1,503,512 - OKGIIK_06745 0.86 -0.2
1,503,512 - OKGIIK_06745 0.86 -0.8
1,503,512 - OKGIIK_06745 0.86 +2.2
1,503,512 - OKGIIK_06745 0.86 -1.5
1,503,512 - OKGIIK_06745 0.86 +0.3
1,503,512 - OKGIIK_06745 0.86 +0.3
1,503,512 - OKGIIK_06745 0.86 -0.1
1,503,514 - OKGIIK_06745 0.87 +0.3
1,503,517 + OKGIIK_06745 0.88 +0.3
1,503,518 - OKGIIK_06745 0.88 -1.6
1,503,518 - OKGIIK_06745 0.88 +0.1
1,503,518 - OKGIIK_06745 0.88 -1.8
1,503,518 - OKGIIK_06745 0.88 -0.6
1,503,518 - OKGIIK_06745 0.88 -0.5
1,503,518 - OKGIIK_06745 0.88 +1.4
1,503,518 - OKGIIK_06745 0.88 -1.1
1,503,609 + +0.2
1,503,610 - +0.9
1,504,418 + rnr OKGIIK_06755 0.17 -0.2
1,504,418 + rnr OKGIIK_06755 0.17 -0.0
1,504,418 + rnr OKGIIK_06755 0.17 -0.8
1,504,418 + rnr OKGIIK_06755 0.17 +0.3
1,504,418 + rnr OKGIIK_06755 0.17 -0.0
1,504,418 + rnr OKGIIK_06755 0.17 -0.5
1,504,419 - rnr OKGIIK_06755 0.17 -2.1
1,504,419 - rnr OKGIIK_06755 0.17 -0.5
1,504,419 - rnr OKGIIK_06755 0.17 +0.3
1,504,419 - rnr OKGIIK_06755 0.17 -0.1
1,504,419 - rnr OKGIIK_06755 0.17 -0.4
1,504,419 - rnr OKGIIK_06755 0.17 -0.1

Or see this region's nucleotide sequence