Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaX and ybaB overlap by 1 nucleotides ybaB and recR are separated by 107 nucleotides recR and hinT are separated by 223 nucleotides
OKGIIK_05645: dnaX - DNA polymerase III subunit gamma/tau, at 1,242,317 to 1,243,996
dnaX
OKGIIK_05650: ybaB - YbaB/EbfC family nucleoid-associated protein, at 1,243,996 to 1,244,319
ybaB
OKGIIK_05655: recR - recombination mediator RecR, at 1,244,427 to 1,245,029
recR
OKGIIK_05660: hinT - histidine triad nucleotide-binding protein, at 1,245,253 to 1,245,597
hinT
Position (kb) 1243
1244
1245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.144 kb on + strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.145 kb on - strand, within ybaB at 1244.240 kb on + strand, within ybaB at 1244.240 kb on + strand, within ybaB at 1244.240 kb on + strand, within ybaB at 1244.240 kb on + strand, within ybaB at 1244.240 kb on + strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.241 kb on - strand, within ybaB at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.739 kb on + strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.740 kb on - strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.892 kb on + strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.893 kb on - strand, within recR at 1244.951 kb on - strand, within recR at 1244.973 kb on + strand at 1244.973 kb on + strand at 1244.973 kb on + strand at 1244.973 kb on + strand at 1244.973 kb on + strand at 1244.973 kb on + strand at 1244.973 kb on + strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1244.974 kb on - strand at 1245.163 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.192 kb on + strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.193 kb on - strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.213 kb on + strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.214 kb on - strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.219 kb on + strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.220 kb on - strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.234 kb on + strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.235 kb on - strand at 1245.310 kb on + strand, within hinT at 1245.310 kb on + strand, within hinT at 1245.310 kb on + strand, within hinT at 1245.311 kb on - strand, within hinT at 1245.311 kb on - strand, within hinT at 1245.311 kb on - strand, within hinT at 1245.311 kb on - strand, within hinT at 1245.311 kb on - strand, within hinT at 1245.311 kb on - strand, within hinT
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 1,244,144 + ybaB OKGIIK_05650 0.46 +0.9 1,244,144 + ybaB OKGIIK_05650 0.46 +1.0 1,244,144 + ybaB OKGIIK_05650 0.46 -0.1 1,244,144 + ybaB OKGIIK_05650 0.46 +0.5 1,244,144 + ybaB OKGIIK_05650 0.46 +0.8 1,244,144 + ybaB OKGIIK_05650 0.46 +0.3 1,244,144 + ybaB OKGIIK_05650 0.46 -2.8 1,244,144 + ybaB OKGIIK_05650 0.46 -1.3 1,244,144 + ybaB OKGIIK_05650 0.46 +0.6 1,244,144 + ybaB OKGIIK_05650 0.46 -1.9 1,244,144 + ybaB OKGIIK_05650 0.46 +1.0 1,244,144 + ybaB OKGIIK_05650 0.46 +1.5 1,244,144 + ybaB OKGIIK_05650 0.46 -0.2 1,244,144 + ybaB OKGIIK_05650 0.46 +0.2 1,244,144 + ybaB OKGIIK_05650 0.46 +1.0 1,244,144 + ybaB OKGIIK_05650 0.46 +0.0 1,244,144 + ybaB OKGIIK_05650 0.46 +1.6 1,244,144 + ybaB OKGIIK_05650 0.46 -0.2 1,244,144 + ybaB OKGIIK_05650 0.46 +0.7 1,244,144 + ybaB OKGIIK_05650 0.46 +0.9 1,244,144 + ybaB OKGIIK_05650 0.46 +0.0 1,244,144 + ybaB OKGIIK_05650 0.46 -1.0 1,244,145 - ybaB OKGIIK_05650 0.46 -0.5 1,244,145 - ybaB OKGIIK_05650 0.46 -1.8 1,244,145 - ybaB OKGIIK_05650 0.46 -1.1 1,244,145 - ybaB OKGIIK_05650 0.46 -1.3 1,244,145 - ybaB OKGIIK_05650 0.46 +0.6 1,244,145 - ybaB OKGIIK_05650 0.46 +0.7 1,244,145 - ybaB OKGIIK_05650 0.46 +2.8 1,244,145 - ybaB OKGIIK_05650 0.46 +1.4 1,244,145 - ybaB OKGIIK_05650 0.46 +1.6 1,244,145 - ybaB OKGIIK_05650 0.46 -2.5 1,244,145 - ybaB OKGIIK_05650 0.46 -0.5 1,244,145 - ybaB OKGIIK_05650 0.46 +0.8 1,244,145 - ybaB OKGIIK_05650 0.46 -0.4 1,244,145 - ybaB OKGIIK_05650 0.46 +1.6 1,244,240 + ybaB OKGIIK_05650 0.75 +1.3 1,244,240 + ybaB OKGIIK_05650 0.75 -0.0 1,244,240 + ybaB OKGIIK_05650 0.75 +0.3 1,244,240 + ybaB OKGIIK_05650 0.75 +0.7 1,244,240 + ybaB OKGIIK_05650 0.75 +0.3 1,244,241 - ybaB OKGIIK_05650 0.76 +0.7 1,244,241 - ybaB OKGIIK_05650 0.76 +1.5 1,244,241 - ybaB OKGIIK_05650 0.76 +1.4 1,244,241 - ybaB OKGIIK_05650 0.76 +1.0 1,244,241 - ybaB OKGIIK_05650 0.76 +0.2 1,244,241 - ybaB OKGIIK_05650 0.76 +0.3 1,244,241 - ybaB OKGIIK_05650 0.76 +1.5 1,244,739 + recR OKGIIK_05655 0.52 -0.1 1,244,739 + recR OKGIIK_05655 0.52 -0.5 1,244,739 + recR OKGIIK_05655 0.52 +0.3 1,244,739 + recR OKGIIK_05655 0.52 -0.6 1,244,739 + recR OKGIIK_05655 0.52 +0.7 1,244,739 + recR OKGIIK_05655 0.52 +0.7 1,244,739 + recR OKGIIK_05655 0.52 -0.2 1,244,739 + recR OKGIIK_05655 0.52 -0.4 1,244,739 + recR OKGIIK_05655 0.52 +0.8 1,244,739 + recR OKGIIK_05655 0.52 +0.3 1,244,739 + recR OKGIIK_05655 0.52 -1.5 1,244,740 - recR OKGIIK_05655 0.52 +1.0 1,244,740 - recR OKGIIK_05655 0.52 +0.0 1,244,740 - recR OKGIIK_05655 0.52 +0.5 1,244,740 - recR OKGIIK_05655 0.52 -0.2 1,244,740 - recR OKGIIK_05655 0.52 +2.3 1,244,740 - recR OKGIIK_05655 0.52 -0.0 1,244,740 - recR OKGIIK_05655 0.52 -1.3 1,244,740 - recR OKGIIK_05655 0.52 +0.5 1,244,740 - recR OKGIIK_05655 0.52 -1.0 1,244,740 - recR OKGIIK_05655 0.52 -1.3 1,244,740 - recR OKGIIK_05655 0.52 +1.6 1,244,740 - recR OKGIIK_05655 0.52 +1.8 1,244,740 - recR OKGIIK_05655 0.52 -1.5 1,244,740 - recR OKGIIK_05655 0.52 +0.8 1,244,740 - recR OKGIIK_05655 0.52 +0.7 1,244,892 + recR OKGIIK_05655 0.77 +0.4 1,244,892 + recR OKGIIK_05655 0.77 -0.4 1,244,892 + recR OKGIIK_05655 0.77 -1.3 1,244,892 + recR OKGIIK_05655 0.77 +1.6 1,244,892 + recR OKGIIK_05655 0.77 +0.6 1,244,892 + recR OKGIIK_05655 0.77 -1.3 1,244,892 + recR OKGIIK_05655 0.77 -2.3 1,244,892 + recR OKGIIK_05655 0.77 -1.5 1,244,892 + recR OKGIIK_05655 0.77 +2.0 1,244,892 + recR OKGIIK_05655 0.77 +0.8 1,244,892 + recR OKGIIK_05655 0.77 -2.0 1,244,893 - recR OKGIIK_05655 0.77 +0.6 1,244,893 - recR OKGIIK_05655 0.77 -2.0 1,244,893 - recR OKGIIK_05655 0.77 -0.3 1,244,893 - recR OKGIIK_05655 0.77 -1.1 1,244,893 - recR OKGIIK_05655 0.77 +0.0 1,244,893 - recR OKGIIK_05655 0.77 +0.5 1,244,893 - recR OKGIIK_05655 0.77 -1.8 1,244,893 - recR OKGIIK_05655 0.77 -0.4 1,244,951 - recR OKGIIK_05655 0.87 +0.8 1,244,973 + -1.3 1,244,973 + +0.3 1,244,973 + -1.8 1,244,973 + -2.3 1,244,973 + -0.5 1,244,973 + -0.1 1,244,973 + +1.6 1,244,974 - +0.8 1,244,974 - +1.0 1,244,974 - +0.0 1,244,974 - -1.3 1,244,974 - -1.5 1,244,974 - -0.3 1,244,974 - -0.2 1,244,974 - +0.4 1,244,974 - +0.0 1,244,974 - -1.5 1,244,974 - -1.5 1,244,974 - +0.8 1,244,974 - +0.0 1,244,974 - +0.6 1,245,163 + +0.3 1,245,192 + +0.5 1,245,192 + +0.2 1,245,192 + -1.4 1,245,192 + +1.8 1,245,192 + +1.3 1,245,192 + +0.6 1,245,192 + +2.0 1,245,192 + +0.7 1,245,192 + -0.5 1,245,192 + +1.5 1,245,193 - -1.1 1,245,193 - -1.0 1,245,193 - -0.1 1,245,193 - -0.2 1,245,193 - -2.4 1,245,193 - -1.5 1,245,193 - -0.8 1,245,193 - +0.7 1,245,213 + -1.1 1,245,213 + +0.0 1,245,213 + +0.8 1,245,213 + +0.0 1,245,213 + +0.0 1,245,213 + -1.5 1,245,213 + -0.4 1,245,213 + -1.1 1,245,213 + -0.1 1,245,213 + -2.1 1,245,213 + -0.3 1,245,213 + -0.3 1,245,213 + -0.3 1,245,213 + +0.8 1,245,214 - +3.4 1,245,214 - +1.2 1,245,214 - -2.1 1,245,214 - +0.5 1,245,214 - -0.3 1,245,214 - +0.6 1,245,214 - -0.2 1,245,214 - +0.8 1,245,214 - +1.6 1,245,214 - -0.0 1,245,214 - -2.1 1,245,214 - +0.6 1,245,214 - +1.0 1,245,214 - +1.6 1,245,214 - +2.0 1,245,219 + +0.3 1,245,219 + +0.2 1,245,219 + +0.0 1,245,219 + -0.5 1,245,219 + -1.1 1,245,219 + +0.6 1,245,219 + +0.6 1,245,219 + -2.9 1,245,219 + -0.3 1,245,219 + +0.1 1,245,219 + -2.0 1,245,219 + -0.2 1,245,219 + -0.1 1,245,220 - -1.8 1,245,220 - -2.3 1,245,220 - +3.6 1,245,220 - +0.0 1,245,220 - +0.3 1,245,220 - +0.3 1,245,220 - +0.5 1,245,220 - +1.0 1,245,234 + +0.4 1,245,234 + -1.0 1,245,234 + -1.3 1,245,234 + +0.7 1,245,234 + +0.6 1,245,234 + -0.7 1,245,234 + +1.0 1,245,234 + +0.5 1,245,234 + -1.8 1,245,234 + +0.4 1,245,234 + -1.6 1,245,234 + -1.0 1,245,235 - +1.0 1,245,235 - +0.5 1,245,235 - -1.0 1,245,235 - +1.0 1,245,235 - -0.3 1,245,235 - +0.3 1,245,235 - -1.5 1,245,235 - +0.8 1,245,235 - -2.1 1,245,235 - +0.4 1,245,235 - +0.8 1,245,235 - -2.1 1,245,235 - +0.0 1,245,235 - -1.3 1,245,235 - +1.4 1,245,235 - -1.0 1,245,235 - -0.1 1,245,310 + hinT OKGIIK_05660 0.17 -0.4 1,245,310 + hinT OKGIIK_05660 0.17 +0.7 1,245,310 + hinT OKGIIK_05660 0.17 -0.5 1,245,311 - hinT OKGIIK_05660 0.17 +1.6 1,245,311 - hinT OKGIIK_05660 0.17 -0.0 1,245,311 - hinT OKGIIK_05660 0.17 -0.7 1,245,311 - hinT OKGIIK_05660 0.17 +1.7 1,245,311 - hinT OKGIIK_05660 0.17 +0.6 1,245,311 - hinT OKGIIK_05660 0.17 +0.5
Or see this region's nucleotide sequence