Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroC and OKGIIK_04810 are separated by 31 nucleotides OKGIIK_04810 and asd are separated by 35 nucleotides
OKGIIK_04805: aroC - chorismate synthase, at 1,045,032 to 1,046,120
aroC
OKGIIK_04810: OKGIIK_04810 - D-glycerate dehydrogenase, at 1,046,152 to 1,047,147
_04810
OKGIIK_04815: asd - aspartate-semialdehyde dehydrogenase, at 1,047,183 to 1,048,214
asd
Position (kb)
1046
1047
1048 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1045.194 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.362 kb on + strand, within aroC at 1045.363 kb on - strand, within aroC at 1045.374 kb on + strand, within aroC at 1045.374 kb on + strand, within aroC at 1045.374 kb on + strand, within aroC at 1045.375 kb on - strand, within aroC at 1045.605 kb on + strand, within aroC at 1045.605 kb on + strand, within aroC at 1045.605 kb on + strand, within aroC at 1045.606 kb on - strand, within aroC at 1045.821 kb on + strand, within aroC at 1046.476 kb on + strand, within OKGIIK_04810 at 1046.477 kb on - strand, within OKGIIK_04810 at 1046.599 kb on - strand, within OKGIIK_04810 at 1046.599 kb on - strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.677 kb on + strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.678 kb on - strand, within OKGIIK_04810 at 1046.968 kb on + strand, within OKGIIK_04810 at 1046.969 kb on - strand, within OKGIIK_04810 at 1046.969 kb on - strand, within OKGIIK_04810 at 1047.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 1,045,194 + aroC OKGIIK_04805 0.15 -1.0 1,045,362 + aroC OKGIIK_04805 0.30 -1.5 1,045,362 + aroC OKGIIK_04805 0.30 +0.7 1,045,362 + aroC OKGIIK_04805 0.30 +1.7 1,045,362 + aroC OKGIIK_04805 0.30 +1.0 1,045,363 - aroC OKGIIK_04805 0.30 +1.4 1,045,374 + aroC OKGIIK_04805 0.31 +0.0 1,045,374 + aroC OKGIIK_04805 0.31 -0.7 1,045,374 + aroC OKGIIK_04805 0.31 -2.1 1,045,375 - aroC OKGIIK_04805 0.31 -1.4 1,045,605 + aroC OKGIIK_04805 0.53 +0.2 1,045,605 + aroC OKGIIK_04805 0.53 -0.7 1,045,605 + aroC OKGIIK_04805 0.53 +1.4 1,045,606 - aroC OKGIIK_04805 0.53 -0.5 1,045,821 + aroC OKGIIK_04805 0.72 -0.2 1,046,476 + OKGIIK_04810 0.33 -1.0 1,046,477 - OKGIIK_04810 0.33 -0.5 1,046,599 - OKGIIK_04810 0.45 +0.9 1,046,599 - OKGIIK_04810 0.45 +1.0 1,046,677 + OKGIIK_04810 0.53 -0.3 1,046,677 + OKGIIK_04810 0.53 +0.4 1,046,677 + OKGIIK_04810 0.53 -0.3 1,046,677 + OKGIIK_04810 0.53 +1.6 1,046,677 + OKGIIK_04810 0.53 -1.4 1,046,677 + OKGIIK_04810 0.53 -0.5 1,046,678 - OKGIIK_04810 0.53 +0.3 1,046,678 - OKGIIK_04810 0.53 -1.5 1,046,678 - OKGIIK_04810 0.53 -1.3 1,046,678 - OKGIIK_04810 0.53 +3.0 1,046,678 - OKGIIK_04810 0.53 -0.7 1,046,968 + OKGIIK_04810 0.82 -0.2 1,046,969 - OKGIIK_04810 0.82 +0.0 1,046,969 - OKGIIK_04810 0.82 -2.0 1,047,201 + +1.1
Or see this region's nucleotide sequence