Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmJ and OKGIIK_04565 are separated by 132 nucleotides OKGIIK_04565 and OKGIIK_04570 are separated by 58 nucleotides OKGIIK_04570 and OKGIIK_04575 are separated by 111 nucleotides
OKGIIK_04560: rlmJ - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 997,314 to 998,228
rlmJ
OKGIIK_04565: OKGIIK_04565 - hypothetical protein, at 998,361 to 998,687
_04565
OKGIIK_04570: OKGIIK_04570 - hypothetical protein, at 998,746 to 999,144
_04570
OKGIIK_04575: OKGIIK_04575 - Copper resistance protein CopA, at 999,256 to 1,001,019
_04575
Position (kb) 998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.640 kb on - strand, within rlmJ at 997.651 kb on + strand, within rlmJ at 997.652 kb on - strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.729 kb on + strand, within rlmJ at 997.730 kb on - strand, within rlmJ at 997.730 kb on - strand, within rlmJ at 997.795 kb on + strand, within rlmJ at 997.940 kb on - strand, within rlmJ at 998.089 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.210 kb on - strand at 998.221 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.298 kb on - strand at 998.558 kb on + strand, within OKGIIK_04565 at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 999.073 kb on + strand, within OKGIIK_04570 at 999.074 kb on - strand, within OKGIIK_04570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 997,640 - rlmJ OKGIIK_04560 0.36 -1.5 997,651 + rlmJ OKGIIK_04560 0.37 -1.1 997,652 - rlmJ OKGIIK_04560 0.37 +0.6 997,708 + rlmJ OKGIIK_04560 0.43 +0.3 997,708 + rlmJ OKGIIK_04560 0.43 +0.0 997,708 + rlmJ OKGIIK_04560 0.43 -0.2 997,708 + rlmJ OKGIIK_04560 0.43 -0.3 997,708 + rlmJ OKGIIK_04560 0.43 -1.4 997,708 + rlmJ OKGIIK_04560 0.43 +0.8 997,709 - rlmJ OKGIIK_04560 0.43 +0.2 997,709 - rlmJ OKGIIK_04560 0.43 -1.4 997,709 - rlmJ OKGIIK_04560 0.43 -1.3 997,729 + rlmJ OKGIIK_04560 0.45 +0.0 997,730 - rlmJ OKGIIK_04560 0.45 +1.0 997,730 - rlmJ OKGIIK_04560 0.45 -1.3 997,795 + rlmJ OKGIIK_04560 0.53 -0.5 997,940 - rlmJ OKGIIK_04560 0.68 +0.9 998,089 + rlmJ OKGIIK_04560 0.85 -1.0 998,119 + rlmJ OKGIIK_04560 0.88 -0.3 998,119 + rlmJ OKGIIK_04560 0.88 -0.2 998,119 + rlmJ OKGIIK_04560 0.88 -2.1 998,119 + rlmJ OKGIIK_04560 0.88 -0.4 998,119 + rlmJ OKGIIK_04560 0.88 +0.4 998,119 + rlmJ OKGIIK_04560 0.88 -0.3 998,120 - rlmJ OKGIIK_04560 0.88 -0.7 998,120 - rlmJ OKGIIK_04560 0.88 -1.1 998,120 - rlmJ OKGIIK_04560 0.88 -1.2 998,120 - rlmJ OKGIIK_04560 0.88 -1.2 998,210 - -0.9 998,221 + +1.5 998,237 + +0.6 998,237 + +0.3 998,237 + +0.6 998,237 + -1.3 998,237 + +1.0 998,237 + -0.6 998,237 + -1.2 998,237 + -2.0 998,237 + -2.4 998,238 - -0.6 998,238 - -1.0 998,238 - +0.5 998,238 - -0.1 998,238 - -1.8 998,239 + +0.6 998,239 + -1.7 998,239 + +1.0 998,239 + -0.6 998,240 - -1.5 998,240 - -1.1 998,240 - -0.4 998,240 - -2.1 998,240 - -0.2 998,297 + -0.1 998,297 + -1.0 998,297 + +1.0 998,297 + +0.0 998,297 + +0.6 998,298 - -2.8 998,558 + OKGIIK_04565 0.60 -1.1 998,685 + -0.5 998,685 + -1.3 998,685 + +0.8 998,685 + +1.0 998,685 + -1.4 998,685 + +0.3 998,685 + +0.3 998,686 - +0.3 998,686 - -0.7 998,686 - -1.5 998,686 - -0.9 998,686 - +1.0 998,686 - +0.4 998,734 + +0.8 998,734 + -0.0 998,734 + +0.8 998,734 + -1.0 998,734 + +0.0 998,734 + -1.1 998,734 + -1.3 998,735 - +0.6 998,735 - -0.2 998,735 - +0.6 998,735 - -2.8 998,735 - -0.4 998,735 - -0.7 998,735 - -2.7 999,073 + OKGIIK_04570 0.82 -0.6 999,074 - OKGIIK_04570 0.82 +2.4
Or see this region's nucleotide sequence